AlfalfaGEDB | MsaG028568

M. sativa ssp. caerulea / MsaG028568

KEGG: K13423 K13424
GO: GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009403 GO:0009404 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009700 GO:0009889 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010035 GO:0010120 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010506 GO:0010508 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0031323 GO:0031325 GO:0031326 GO:0031329 GO:0031331 GO:0033554 GO:0034605 GO:0034641 GO:0042221 GO:0042430 GO:0042435 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044424 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0070370 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028568	XP_003615949.1	96.539	549	14	4	1	547	36	581	0.0	1083

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028568	sp\|Q6B6R4\|WRK24_ORYSI	49.719	533	190	18	49	546	65	554	9.64e-134	403

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028568	tr\|G7K5T2\|G7K5T2_MEDTR	96.539	549	14	4	1	547	36	581	0.0	1083

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TFs/TRs:

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Gene ID	Type	Classification
MsaG028568	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG028568	0.837560	8.873722e-57	3.210929e-54
MsaG000045	MsaG028568	0.872824	4.851692e-67	6.342853e-64
MsaG000083	MsaG028568	0.838964	3.874523e-57	1.464294e-54
MsaG000107	MsaG028568	0.800954	1.893789e-48	2.616204e-46
MsaG000113	MsaG028568	0.825245	9.239941e-54	2.340017e-51
MsaG000115	MsaG028568	0.827589	2.569427e-54	6.946058e-52
MsaG000117	MsaG028568	0.829983	6.814372e-55	1.971193e-52
MsaG000128	MsaG028568	0.822735	3.562953e-53	8.427907e-51
MsaG000151	MsaG028568	0.842553	4.485530e-58	1.898734e-55
MsaG000153	MsaG028568	0.831585	2.771184e-55	8.394753e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028568	MtrunA17_Chr5g0432161	96.364	550	14	5	1	547	36	582	0.0	1077
MsaG028568	MtrunA17_Chr3g0106491	55.712	569	164	21	2	546	3	507	6.07e-173	498
MsaG028568	MtrunA17_Chr7g0243891	47.610	544	226	17	25	546	35	541	3.15e-138	411
MsaG028568	MtrunA17_Chr4g0004911	48.276	406	151	14	48	447	47	399	2.68e-104	322
MsaG028568	MtrunA17_Chr3g0079691	43.617	470	177	13	47	448	110	559	1.77e-95	305
MsaG028568	MtrunA17_Chr3g0079691	54.118	85	37	2	384	467	280	363	1.08e-17	86.7
MsaG028568	MtrunA17_Chr3g0079691	53.425	73	32	2	207	278	495	566	5.98e-15	78.2
MsaG028568	MtrunA17_Chr5g0445311	43.478	437	199	12	26	448	26	428	1.61e-93	296
MsaG028568	MtrunA17_Chr5g0445311	50.649	77	24	2	384	460	200	262	3.31e-15	78.6
MsaG028568	MtrunA17_Chr3g0101131	40.430	465	197	14	28	446	47	477	9.38e-88	282

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028568	AT2G38470.1	57.102	352	128	10	204	546	181	518	4.41e-107	330
MsaG028568	AT5G07100.1	44.340	424	100	11	24	446	8	296	7.89e-93	286
MsaG028568	AT2G03340.1	44.064	438	189	15	27	463	108	490	1.62e-91	290
MsaG028568	AT4G26640.7	41.247	417	226	5	43	453	7	410	4.39e-91	289
MsaG028568	AT4G26640.2	41.247	417	226	5	43	453	47	450	1.15e-90	289
MsaG028568	AT2G30250.1	43.226	465	165	14	2	445	3	389	1.71e-88	278
MsaG028568	AT2G30250.1	55.385	65	28	1	208	271	329	393	1.02e-15	79.7
MsaG028568	AT1G13960.1	42.326	430	171	11	27	443	103	468	1.27e-85	275
MsaG028568	AT4G26640.5	54.440	259	99	5	201	453	29	274	5.81e-85	269
MsaG028568	AT4G26640.6	54.440	259	99	5	201	453	29	274	5.81e-85	269

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Find 132 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCACCAGTTGTAGGTGA+TGG	0.572239	5:-64167312	None:intergenic
AAAGTTGAGAGATCAATTGA+GGG	0.542158	5:+64168255	MsaT028568.1:CDS
AAATCCAAACAATGGAGCAA+TGG	0.589039	5:+64169773	MsaT028568.1:CDS
AAATCCATTGTTAGTGTTGT+TGG	0.345706	5:-64168061	None:intergenic
AACAAGTGACATTGATATCC+TGG	0.483451	5:+64168942	MsaT028568.1:CDS
AACCCTTCAAATCCAAACAA+TGG	0.610392	5:+64169765	MsaT028568.1:CDS
AACGTGCCTCACATGATTTA+AGG	0.307899	5:+64169649	MsaT028568.1:CDS
AAGGAAATTATGGATTCTCA+AGG	0.541036	5:+64169877	MsaT028568.1:CDS
AAGTAAGAAGAAGGAGAAAC+AGG	0.327987	5:-64166667	None:intergenic
AATTCTTCAATATCAATAGG+AGG	0.635230	5:+64168462	MsaT028568.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	64166541	64170031	64166541	ID=MsaG028568
Chr5	mRNA	64166541	64170031	64166541	ID=MsaT028568.1;Parent=MsaG028568
Chr5	exon	64166541	64166756	64166541	ID=MsaT028568.1.exon1;Parent=MsaT028568.1
Chr5	CDS	64166541	64166756	64166541	ID=cds.MsaT028568.1;Parent=MsaT028568.1
Chr5	exon	64167306	64167491	64167306	ID=MsaT028568.1.exon2;Parent=MsaT028568.1
Chr5	CDS	64167306	64167491	64167306	ID=cds.MsaT028568.1;Parent=MsaT028568.1
Chr5	exon	64167934	64168577	64167934	ID=MsaT028568.1.exon3;Parent=MsaT028568.1
Chr5	CDS	64167934	64168577	64167934	ID=cds.MsaT028568.1;Parent=MsaT028568.1
Chr5	exon	64168861	64169025	64168861	ID=MsaT028568.1.exon4;Parent=MsaT028568.1
Chr5	CDS	64168861	64169025	64168861	ID=cds.MsaT028568.1;Parent=MsaT028568.1
Chr5	exon	64169599	64170031	64169599	ID=MsaT028568.1.exon5;Parent=MsaT028568.1
Chr5	CDS	64169599	64170031	64169599	ID=cds.MsaT028568.1;Parent=MsaT028568.1

Gene Sequence

>MsaT028568.1

ATGTCAACAACTTTCTCTGATCTTTTAGCTTCTCCTTCTGCTGCTTCTTCAGATGATAATAACAATTCAAGGGGTGTGCCAAAATTTAAGTCTACACCCCCTCCTTCTTTGCCTTTGTCACCTCCCCCTGTTTCTCCTTCTTCTTACTTTGCTATTCCTCCTGGTTTAAGCCCTGCTGACCTTCTTGATTCTCCTGTTATGCTTAACTCTTCCAATATTTTGCCATCACCTACAACTGGTGCTTTTGCTGCTCAAAGCAACTACAATTGGATGAACAATTCTGAGGGGAATCAGCAAATGAGAAAGGAAAATTTCTCTTTTCAAACCCAACAACAAGGGCCTGCTGCTGTTACTGCATCCACAACAACTTTTCAATCATCAACTGTTGGTGGAGTTCAACAACAACAGCAATGGAGTTATCAAGAGAACACAAATCAGAATGCTTTTTCATCCGAAAAGAATATGATACAAACTGAAAACAACAACTCTTCAATGCAGAGTTTTCCACCTGAGATTGCTAGTGTTCAAACCAACAACACTAACAATGGATTTCAATCAGACTACTCCAATTACCAGCAACCACAGCAACAACCAACTCAAACCTTAAGCCGAAGATCCGATGATGGATACAATTGGCGAAAATACGGACAAAAGCAAGTGAAAGGAAGTGAAAATCCGAGAAGTTACTACAAGTGCACATACCCTAATTGTCCTACTAAGAAGAAAGTTGAGAGATCAATTGAGGGACAAGTTACTGAGATAGTTTATAAGGGTACTCATAATCATGCTAAGCCTCAATGCACAAGGAGAAACTCGTCATCATCTTCTAATGCTCTCGTGGTTGTTCCTGTTAATCCAATCAATGAAATCCATGATCAGTCATATGCATCACATGGTAATGGACAAATGGATTCTGCTGCTACTCCTGAGAATTCTTCAATATCAATAGGAGGTGATGATGATTTTGAGCAGAGTTCTCACCAAAGGAGTCGATCAGGTGGTGCTGGTGATGAATTTGACGAAGAGGAACCTGAGGCTAAAAGATGGAAAAATGAAGGTGAAAATGAGGGTATATCAGCACAACCTGCAAGTAGAACTGTGAGAGAACCTAGAGTTGTAGTTCAGACAACAAGTGACATTGATATCCTGGATGATGGTTACAGATGGAGGAAATATGGACAGAAAGTTGTTAAGGGAAATCCAAATCCAAGGAGTTACTACAAATGCACACACCCTAACTGTCCAGTGAGGAAGCATGTCGAACGTGCCTCACATGATTTAAGGGCTGTGATCACAACTTATGAGGGAAAACATAACCATGATGTCCCTGCTGCTCGTGGAAGTGGAAGCCATTCTGTGAACAGACCAATGCCAAACAACCCTTCAAATCCAAACAATGGAGCAATGGCCATAAGGCCTCTTCAGAGTCAGAGGCCACAACAAGCACCTCAAGGACAATCACCATTCAACCTTCAAATGCTGCAGGGCCAAGGAAATTATGGATTCTCAAGGTTTGATAATCAAATGGTGCCATACATGAATCAACAACAGCAGCAGCAACAACAAATGGCTGAAAATGGTTTTTCCTCTAGAGCTAAGGAAGAACCTAAAGATGACATGTTCCTTGAATCTTTGCTGTGCTGA

Protein sequence

>MsaT028568.1

MSTTFSDLLASPSAASSDDNNNSRGVPKFKSTPPPSLPLSPPPVSPSSYFAIPPGLSPADLLDSPVMLNSSNILPSPTTGAFAAQSNYNWMNNSEGNQQMRKENFSFQTQQQGPAAVTASTTTFQSSTVGGVQQQQQWSYQENTNQNAFSSEKNMIQTENNNSSMQSFPPEIASVQTNNTNNGFQSDYSNYQQPQQQPTQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSIEGQVTEIVYKGTHNHAKPQCTRRNSSSSSNALVVVPVNPINEIHDQSYASHGNGQMDSAATPENSSISIGGDDDFEQSSHQRSRSGGAGDEFDEEEPEAKRWKNEGENEGISAQPASRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPNCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPMPNNPSNPNNGAMAIRPLQSQRPQQAPQGQSPFNLQMLQGQGNYGFSRFDNQMVPYMNQQQQQQQQMAENGFSSRAKEEPKDDMFLESLLC*