AlfalfaGEDB | MsaG028577

M. sativa ssp. caerulea / MsaG028577

KEGG: K13424
GO: -
PFAM: PF03106.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028577	RHN56682.1	89.151	212	22	1	1	212	1	211	1.67e-137	393

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028577	sp\|Q6B6R4\|WRK24_ORYSI	51.402	107	44	4	89	195	207	305	3.20e-25	105
MsaG028577	sp\|Q6B6R4\|WRK24_ORYSI	53.226	62	28	1	104	164	385	446	3.56e-13	70.9

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028577	tr\|A0A396HTL3\|A0A396HTL3_MEDTR	89.151	212	22	1	1	212	1	211	7.98e-138	393

TFs/TRs:

Gene ID	Type	Classification
MsaG028577	TF	WRKY

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000070	MsaG028577	0.801396	1.539197e-48	2.147746e-46
MsaG000083	MsaG028577	0.807256	9.381587e-50	1.499717e-47
MsaG000113	MsaG028577	0.830568	4.911935e-55	1.444766e-52
MsaG000213	MsaG028577	0.808478	5.172325e-50	8.514673e-48
MsaG000151	MsaG028577	0.811789	1.008074e-50	1.798474e-48
MsaG000188	MsaG028577	0.822009	5.244350e-53	1.216489e-50
MsaG001031	MsaG028577	0.804486	3.562570e-49	5.336979e-47
MsaG001335	MsaG028577	0.812574	6.807820e-51	1.238409e-48
MsaG001678	MsaG028577	0.801351	1.571893e-48	2.191134e-46
MsaG003072	MsaG028577	0.819561	1.905072e-52	4.141341e-50
MsaG003086	MsaG028577	0.800629	2.204842e-48	3.023777e-46
MsaG003140	MsaG028577	0.826803	3.955801e-54	1.046072e-51
MsaG003311	MsaG028577	0.816422	9.679096e-52	1.939792e-49
MsaG003859	MsaG028577	0.820186	1.372778e-52	3.034304e-50
MsaG003972	MsaG028577	0.804732	3.166483e-49	4.770852e-47
MsaG003973	MsaG028577	0.812905	5.767206e-51	1.057752e-48
MsaG003975	MsaG028577	0.819464	2.003464e-52	4.344432e-50
MsaG004426	MsaG028577	0.816924	7.477009e-52	1.518015e-49
MsaG004591	MsaG028577	0.815864	1.287926e-51	2.544740e-49
MsaG005528	MsaG028577	0.806018	1.708031e-49	2.651667e-47
MsaG005875	MsaG028577	0.805576	2.112502e-49	3.245795e-47
MsaG006013	MsaG028577	0.823500	2.366629e-53	5.715046e-51
MsaG006608	MsaG028577	0.807305	9.160831e-50	1.466159e-47
MsaG006681	MsaG028577	0.825274	9.097305e-54	2.305708e-51
MsaG006857	MsaG028577	0.819200	2.299269e-52	4.951653e-50
MsaG007117	MsaG028577	0.802689	8.370108e-49	1.202880e-46
MsaG007325	MsaG028577	0.807396	8.765433e-50	1.405913e-47
MsaG007847	MsaG028577	0.857908	2.310255e-62	1.660270e-59
MsaG007850	MsaG028577	0.812201	8.204155e-51	1.478583e-48
MsaG007808	MsaG028577	0.813232	4.893548e-51	9.048931e-49
MsaG008288	MsaG028577	0.811455	1.190886e-50	2.107291e-48
MsaG008299	MsaG028577	0.813502	4.270700e-51	7.950654e-49
MsaG011336	MsaG028577	0.813682	3.900841e-51	7.295008e-49
MsaG011819	MsaG028577	0.824966	1.075048e-53	2.701770e-51
MsaG011881	MsaG028577	0.821642	6.369260e-53	1.463096e-50
MsaG012594	MsaG028577	0.828311	1.725553e-54	4.760133e-52
MsaG014555	MsaG028577	0.804430	3.658973e-49	5.474339e-47
MsaG015145	MsaG028577	0.815507	1.545378e-51	3.025857e-49
MsaG015317	MsaG028577	0.848768	9.416059e-60	4.893149e-57
MsaG016796	MsaG028577	0.818539	3.244204e-52	6.866381e-50
MsaG017087	MsaG028577	0.814596	2.456185e-51	4.699772e-49
MsaG018074	MsaG028577	0.806685	1.237682e-49	1.952116e-47
MsaG018824	MsaG028577	0.825702	7.212779e-54	1.849908e-51
MsaG018876	MsaG028577	0.824157	1.663285e-53	4.088761e-51
MsaG019589	MsaG028577	0.806744	1.202628e-49	1.899488e-47
MsaG019716	MsaG028577	0.802654	8.510598e-49	1.222125e-46
MsaG019887	MsaG028577	0.802769	8.057341e-49	1.160052e-46
MsaG020091	MsaG028577	0.801388	1.545030e-48	2.155503e-46
MsaG020287	MsaG028577	0.802250	1.029607e-48	1.464867e-46
MsaG020583	MsaG028577	0.805189	2.544108e-49	3.874090e-47
MsaG020648	MsaG028577	0.834192	6.278466e-56	2.052809e-53
MsaG020782	MsaG028577	0.823016	3.066541e-53	7.308897e-51
MsaG023590	MsaG028577	0.800026	2.921012e-48	3.951770e-46
MsaG023812	MsaG028577	0.814775	2.243015e-51	4.311471e-49
MsaG023967	MsaG028577	0.816862	7.721303e-52	1.565027e-49
MsaG026933	MsaG028577	0.808660	4.731050e-50	7.822648e-48
MsaG027248	MsaG028577	0.800082	2.844779e-48	3.853468e-46
MsaG027306	MsaG028577	0.804853	2.988796e-49	4.515823e-47
MsaG027898	MsaG028577	0.805517	2.173660e-49	3.335125e-47
MsaG028435	MsaG028577	0.807202	9.631959e-50	1.537775e-47
MsaG028577	MsaG028590	0.824601	1.308913e-53	3.256890e-51
MsaG028577	MsaG028683	0.817426	5.773074e-52	1.187318e-49
MsaG028577	MsaG028881	0.802620	8.645944e-49	1.240605e-46
MsaG028577	MsaG029210	0.805840	1.860710e-49	2.876725e-47
MsaG028577	MsaG029370	0.819229	2.265780e-52	4.883000e-50
MsaG028577	MsaG029381	0.821027	8.818444e-53	1.992995e-50
MsaG028577	MsaG030040	0.803913	4.682671e-49	6.922384e-47
MsaG028577	MsaG031147	0.802293	1.008950e-48	1.436940e-46
MsaG028577	MsaG032765	0.814195	3.009897e-51	5.701734e-49
MsaG028577	MsaG033569	0.811149	1.386413e-50	2.434923e-48
MsaG028577	MsaG034085	0.831614	2.726237e-55	8.265678e-53
MsaG028577	MsaG036503	0.807718	7.494413e-50	1.211387e-47
MsaG028577	MsaG039649	0.830686	4.597952e-55	1.356979e-52
MsaG028577	MsaG041066	0.829069	1.134058e-54	3.195737e-52
MsaG028577	MsaG041303	0.812770	6.171607e-51	1.128115e-48
MsaG028577	MsaG041532	0.806180	1.579362e-49	2.461465e-47
MsaG028577	MsaG041982	0.813031	5.414370e-51	9.961852e-49
MsaG028577	MsaG042381	0.821651	6.339613e-53	1.456626e-50
MsaG028577	MsaG043880	0.837479	9.307967e-57	3.359839e-54
MsaG028577	MsaG045061	0.802352	9.814381e-49	1.399654e-46
MsaG028577	MsaG045416	0.822227	4.670159e-53	1.089646e-50
MsaG028577	MsaG046281	0.818059	4.161726e-52	8.699758e-50
MsaG028577	MsaG046321	0.817913	4.488110e-52	9.346826e-50
MsaG028577	MsaG046981	0.802180	1.064190e-48	1.511652e-46
MsaG028577	MsaG047165	0.805748	1.945216e-49	3.000856e-47
MsaG028577	MsaG000632	0.802436	9.431126e-49	1.347570e-46
MsaG028577	MsaG014339	0.806234	1.538856e-49	2.401433e-47
MsaG028577	MsaG018951	0.806917	1.106022e-49	1.753932e-47
MsaG028577	MsaG032466	0.820552	1.132534e-52	2.527501e-50
MsaG028577	MsaG033379	0.818815	2.810327e-52	5.991072e-50
MsaG028577	MsaG030973	0.808556	4.978864e-50	8.211537e-48
MsaG028577	MsaG033363	0.800388	2.466545e-48	3.364329e-46
MsaG028577	MsaG031525	0.803434	5.879601e-49	8.596091e-47
MsaG028577	MsaG031602	0.806082	1.656234e-49	2.575225e-47
MsaG028577	MsaG038282	0.822376	4.314367e-53	1.010700e-50
MsaG028577	MsaG045432	0.801559	1.425610e-48	1.996588e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028577	MtrunA17_Chr5g0432071	89.151	212	22	1	1	212	1	211	1.54e-141	393
MsaG028577	MtrunA17_Chr5g0431931	66.387	119	38	2	1	118	37	154	2.02e-47	153
MsaG028577	MtrunA17_Chr5g0432011	71.111	90	25	1	1	89	1	90	7.46e-37	124
MsaG028577	MtrunA17_Chr5g0432161	47.552	143	66	4	76	212	214	353	4.59e-31	119
MsaG028577	MtrunA17_Chr5g0432161	56.452	62	26	1	104	164	421	482	3.56e-16	76.6
MsaG028577	MtrunA17_Chr5g0444671	77.778	72	14	2	1	71	95	165	1.45e-29	107
MsaG028577	MtrunA17_Chr3g0106491	45.385	130	64	3	84	212	178	301	3.44e-25	102
MsaG028577	MtrunA17_Chr3g0106491	47.436	78	37	2	104	180	365	439	1.70e-14	71.6
MsaG028577	MtrunA17_Chr7g0243891	52.326	86	37	2	86	170	200	282	6.46e-23	95.9
MsaG028577	MtrunA17_Chr7g0243891	53.226	62	28	1	104	164	374	435	5.99e-15	72.8
MsaG028577	MtrunA17_Chr7g0263531	61.765	68	25	1	105	172	190	256	1.08e-22	94.7
MsaG028577	MtrunA17_Chr7g0263531	46.053	76	39	2	105	178	362	437	4.08e-13	67.4
MsaG028577	MtrunA17_Chr4g0004911	46.939	98	48	3	104	200	184	278	2.79e-21	91.3
MsaG028577	MtrunA17_Chr4g0004911	53.333	60	27	1	104	162	336	395	1.10e-13	69.3
MsaG028577	MtrunA17_Chr3g0101131	56.250	64	28	0	104	167	243	306	5.98e-21	90.5
MsaG028577	MtrunA17_Chr3g0101131	51.471	68	30	2	104	170	415	480	5.77e-15	72.8
MsaG028577	MtrunA17_Chr5g0445311	43.299	97	46	1	76	172	181	268	6.25e-21	90.1
MsaG028577	MtrunA17_Chr5g0445311	51.613	62	29	1	104	164	364	425	1.42e-14	71.6
MsaG028577	MtrunA17_Chr5g0418191	62.712	59	22	0	104	162	151	209	1.47e-20	89.0
MsaG028577	MtrunA17_Chr5g0418191	53.226	62	28	1	104	164	320	381	2.11e-15	73.9
MsaG028577	MtrunA17_Chr7g0218081	57.143	70	28	1	104	171	228	297	1.53e-19	86.3
MsaG028577	MtrunA17_Chr7g0218081	48.684	76	35	2	104	178	410	482	2.34e-15	73.9
MsaG028577	MtrunA17_Chr7g0249311	57.812	64	27	0	104	167	179	242	1.55e-19	86.3
MsaG028577	MtrunA17_Chr7g0249311	51.613	62	29	1	104	164	392	453	3.03e-14	70.9
MsaG028577	MtrunA17_Chr1g0188941	53.125	64	29	1	104	166	51	114	1.08e-18	78.2
MsaG028577	MtrunA17_Chr3g0079691	41.129	124	59	4	51	170	231	344	9.52e-18	81.3
MsaG028577	MtrunA17_Chr3g0079691	52.174	69	29	2	104	171	495	560	2.49e-13	68.2
MsaG028577	MtrunA17_Chr7g0249301	48.235	85	42	1	105	187	63	147	2.12e-17	79.7
MsaG028577	MtrunA17_Chr7g0249301	51.613	62	29	1	104	164	292	353	5.46e-14	69.7
MsaG028577	MtrunA17_Chr4g0042831	44.565	92	46	2	86	172	123	214	2.66e-17	79.3
MsaG028577	MtrunA17_Chr4g0042831	45.882	85	44	2	104	186	278	362	6.11e-15	72.4
MsaG028577	MtrunA17_Chr5g0447701	28.977	176	92	3	34	188	1	164	1.44e-14	71.6
MsaG028577	MtrunA17_Chr5g0447701	45.000	60	32	1	104	162	252	311	4.68e-12	64.3
MsaG028577	MtrunA17_Chr3g0136961	37.778	90	50	3	105	188	139	228	4.07e-14	69.7
MsaG028577	MtrunA17_Chr5g0432041	54.054	74	34	0	1	74	121	194	4.19e-14	70.5
MsaG028577	MtrunA17_Chr6g0468181	60.377	53	20	1	120	172	18	69	5.96e-14	65.9
MsaG028577	MtrunA17_Chr5g0443131	48.529	68	33	2	104	170	157	223	1.34e-13	68.2
MsaG028577	MtrunA17_Chr1g0194481	48.529	68	32	2	104	170	158	223	2.71e-13	67.4
MsaG028577	MtrunA17_Chr5g0431741	32.895	152	91	4	1	145	120	267	3.52e-13	67.8
MsaG028577	MtrunA17_Chr7g0270191	37.931	116	61	5	73	180	107	219	5.20e-13	66.6
MsaG028577	MtrunA17_Chr2g0294231	49.206	63	31	1	104	165	203	265	6.05e-13	66.6
MsaG028577	MtrunA17_Chr8g0383351	52.632	57	26	1	104	159	160	216	7.20e-13	65.5
MsaG028577	MtrunA17_Chr5g0431921	50.000	76	35	1	1	73	120	195	7.39e-13	65.9
MsaG028577	MtrunA17_Chr3g0129361	52.632	57	26	1	104	159	144	200	8.13e-13	65.1
MsaG028577	MtrunA17_Chr8g0335811	56.140	57	24	1	104	159	154	210	8.47e-13	65.1
MsaG028577	MtrunA17_Chr4g0051881	44.156	77	41	2	104	179	178	253	8.64e-13	66.2
MsaG028577	MtrunA17_Chr4g0060271	49.180	61	29	2	104	162	255	315	1.07e-12	66.2
MsaG028577	MtrunA17_Chr4g0051181	47.541	61	30	2	104	162	243	303	1.10e-12	66.2
MsaG028577	MtrunA17_Chr4g0068541	51.667	60	28	1	104	162	208	267	1.83e-12	65.5
MsaG028577	MtrunA17_Chr7g0224801	47.619	63	32	1	104	165	93	155	2.73e-12	62.8
MsaG028577	MtrunA17_Chr5g0447711	40.789	76	45	0	91	166	70	145	3.26e-12	64.3
MsaG028577	MtrunA17_Chr5g0447711	39.130	69	41	1	104	171	230	298	7.36e-11	60.5
MsaG028577	MtrunA17_Chr2g0333851	36.905	84	51	2	105	186	170	253	3.29e-12	64.3
MsaG028577	MtrunA17_Chr8g0383251	51.667	60	28	1	104	162	108	167	4.31e-12	62.4
MsaG028577	MtrunA17_Chr5g0432031	55.556	54	24	0	1	54	132	185	4.77e-12	63.5
MsaG028577	MtrunA17_Chr3g0099641	32.203	118	76	3	73	188	222	337	5.14e-12	64.3
MsaG028577	MtrunA17_Chr7g0231451	46.753	77	39	1	1	75	116	192	6.60e-12	63.5
MsaG028577	MtrunA17_Chr8g0386241	44.444	63	34	1	104	165	103	165	6.68e-12	61.6
MsaG028577	MtrunA17_Chr5g0431981	40.179	112	57	2	1	105	117	225	7.23e-12	63.5
MsaG028577	MtrunA17_Chr1g0150801	36.275	102	59	3	59	159	62	158	8.48e-12	61.2
MsaG028577	MtrunA17_Chr5g0432091	45.652	92	43	2	1	85	120	211	1.04e-11	63.5
MsaG028577	MtrunA17_Chr5g0432181	46.512	86	36	2	1	81	120	200	2.89e-11	61.6
MsaG028577	MtrunA17_Chr7g0238921	48.276	58	29	1	104	160	124	181	3.97e-11	61.2
MsaG028577	MtrunA17_Chr4g0074001	45.763	59	31	1	105	162	360	418	6.03e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028577	AT1G13960.1	57.576	66	28	0	104	169	229	294	1.03e-21	92.8
MsaG028577	AT1G13960.1	55.000	60	26	1	104	162	409	468	8.96e-16	75.5
MsaG028577	AT5G07100.2	58.571	70	27	2	104	172	24	92	1.23e-21	89.0
MsaG028577	AT5G07100.2	55.000	60	26	1	104	162	141	200	1.56e-15	72.8
MsaG028577	AT5G07100.4	58.571	70	27	2	104	172	24	92	1.23e-21	89.0
MsaG028577	AT5G07100.4	55.000	60	26	1	104	162	141	200	1.56e-15	72.8
MsaG028577	AT5G07100.5	58.571	70	27	2	104	172	24	92	1.23e-21	89.0
MsaG028577	AT5G07100.5	55.000	60	26	1	104	162	141	200	1.56e-15	72.8
MsaG028577	AT5G07100.3	58.571	70	27	2	104	172	24	92	1.23e-21	89.0
MsaG028577	AT5G07100.3	55.000	60	26	1	104	162	141	200	1.56e-15	72.8
MsaG028577	AT1G13960.2	57.576	66	28	0	104	169	76	141	1.56e-21	91.3
MsaG028577	AT1G13960.2	55.000	60	26	1	104	162	256	315	2.12e-15	74.3
MsaG028577	AT5G07100.1	58.571	70	27	2	104	172	117	185	1.57e-21	90.5
MsaG028577	AT5G07100.1	55.000	60	26	1	104	162	234	293	1.42e-15	74.3
MsaG028577	AT2G38470.1	60.000	60	24	0	104	163	184	243	2.50e-21	91.7
MsaG028577	AT2G38470.1	53.226	62	28	1	104	164	362	423	1.34e-13	69.3
MsaG028577	AT4G26640.7	48.958	96	38	2	85	170	142	236	2.56e-21	91.7
MsaG028577	AT4G26640.7	46.914	81	40	2	104	183	341	419	6.32e-15	73.2
MsaG028577	AT4G26640.2	48.958	96	38	2	85	170	182	276	2.85e-21	91.7
MsaG028577	AT4G26640.2	46.914	81	40	2	104	183	381	459	6.38e-15	73.2
MsaG028577	AT4G26640.1	48.958	96	38	2	85	170	110	204	3.51e-21	91.3
MsaG028577	AT4G26640.1	46.914	81	40	2	104	183	309	387	7.94e-15	72.8
MsaG028577	AT4G26640.5	48.958	96	38	2	85	170	6	100	4.57e-21	90.1
MsaG028577	AT4G26640.5	46.914	81	40	2	104	183	205	283	8.81e-15	72.4
MsaG028577	AT4G26640.6	48.958	96	38	2	85	170	6	100	4.57e-21	90.1
MsaG028577	AT4G26640.6	46.914	81	40	2	104	183	205	283	8.81e-15	72.4
MsaG028577	AT4G26640.4	48.958	96	38	2	85	170	6	100	4.57e-21	90.1
MsaG028577	AT4G26640.4	46.914	81	40	2	104	183	205	283	8.81e-15	72.4
MsaG028577	AT4G26640.3	48.958	96	38	2	85	170	6	100	4.57e-21	90.1
MsaG028577	AT4G26640.3	46.914	81	40	2	104	183	205	283	8.81e-15	72.4
MsaG028577	AT2G03340.1	54.412	68	31	0	104	171	250	317	1.43e-20	89.4
MsaG028577	AT2G03340.1	53.226	62	28	1	104	164	415	476	1.31e-15	75.1
MsaG028577	AT2G30250.1	45.098	102	50	1	102	203	164	259	5.44e-20	87.4
MsaG028577	AT2G30250.1	54.237	59	26	1	105	162	329	387	6.64e-14	70.1
MsaG028577	AT2G37260.1	54.412	68	31	0	105	172	166	233	6.09e-20	87.4
MsaG028577	AT2G37260.1	37.647	85	46	2	78	161	329	407	6.15e-11	61.6
MsaG028577	AT2G37260.3	54.412	68	31	0	105	172	86	153	7.64e-20	86.7
MsaG028577	AT2G37260.2	54.412	68	31	0	105	172	84	151	7.65e-20	86.3
MsaG028577	AT5G56270.1	56.250	64	28	0	104	167	273	336	7.90e-20	87.4
MsaG028577	AT5G56270.1	54.839	62	27	1	104	164	487	548	1.43e-15	75.1
MsaG028577	AT2G04880.1	48.649	74	38	0	89	162	96	169	4.02e-19	85.5
MsaG028577	AT2G04880.1	46.479	71	35	2	93	162	298	366	1.15e-13	69.3
MsaG028577	AT2G04880.2	48.649	74	38	0	89	162	96	169	4.43e-19	85.1
MsaG028577	AT2G04880.2	46.479	71	35	2	93	162	274	342	1.26e-13	69.3
MsaG028577	AT3G01080.3	58.333	60	25	0	104	163	205	264	1.45e-18	82.8
MsaG028577	AT3G01080.2	58.333	60	25	0	104	163	205	264	5.71e-18	82.0
MsaG028577	AT3G01080.2	56.667	60	25	1	104	162	344	403	8.60e-17	78.6
MsaG028577	AT4G26440.1	57.627	59	25	0	104	162	178	236	5.79e-18	82.0
MsaG028577	AT4G26440.1	52.174	69	29	2	104	171	372	437	1.43e-13	69.3
MsaG028577	AT3G01080.1	57.377	61	26	0	104	164	167	227	7.59e-18	81.3
MsaG028577	AT3G01080.1	56.667	60	25	1	104	162	306	365	1.15e-16	78.2
MsaG028577	AT5G13080.1	52.381	63	29	1	104	165	67	129	2.87e-15	70.5
MsaG028577	AT1G55600.1	51.562	64	30	1	102	164	305	368	1.20e-14	72.4
MsaG028577	AT4G12020.10	42.353	85	45	2	91	175	457	537	1.32e-14	72.4
MsaG028577	AT4G12020.3	42.353	85	45	2	91	175	457	537	1.33e-14	72.4
MsaG028577	AT4G12020.6	42.353	85	45	2	91	175	457	537	1.34e-14	72.4
MsaG028577	AT4G12020.8	42.353	85	45	2	91	175	457	537	1.34e-14	72.4
MsaG028577	AT4G12020.4	42.353	85	45	2	91	175	457	537	1.56e-14	72.4
MsaG028577	AT4G12020.2	42.353	85	45	2	91	175	457	537	1.61e-14	72.4
MsaG028577	AT4G12020.7	42.353	85	45	2	91	175	457	537	1.63e-14	72.4
MsaG028577	AT4G12020.1	42.353	85	45	2	91	175	457	537	1.70e-14	72.4
MsaG028577	AT4G12020.9	42.353	85	45	2	91	175	457	537	1.70e-14	72.4
MsaG028577	AT4G12020.5	42.353	85	45	2	91	175	390	470	1.76e-14	72.0
MsaG028577	AT4G12020.11	42.353	85	45	2	91	175	457	537	2.00e-14	72.0
MsaG028577	AT1G29860.1	47.945	73	36	2	104	175	136	207	3.68e-14	70.1
MsaG028577	AT2G25000.2	31.633	98	61	3	73	168	76	169	2.03e-13	67.0
MsaG028577	AT2G25000.4	31.633	98	61	3	73	168	76	169	2.03e-13	67.0
MsaG028577	AT2G25000.3	31.633	98	61	3	73	168	98	191	3.83e-13	66.6
MsaG028577	AT2G25000.1	31.633	98	61	3	73	168	119	212	6.51e-13	66.2
MsaG028577	AT5G49520.1	51.613	62	29	1	102	162	219	280	6.62e-13	67.0
MsaG028577	AT2G44745.1	56.140	57	24	1	104	159	145	201	7.14e-13	65.5
MsaG028577	AT1G64000.1	49.123	57	28	1	104	159	114	170	1.56e-12	64.3
MsaG028577	AT4G18170.1	50.000	60	29	1	104	162	172	231	1.61e-12	65.5
MsaG028577	AT5G41570.1	49.123	57	28	1	104	159	98	154	3.12e-12	63.2
MsaG028577	AT1G68150.1	47.541	61	30	2	104	162	235	295	6.47e-12	64.3
MsaG028577	AT2G47260.1	35.556	90	51	2	80	162	144	233	8.63e-12	63.5
MsaG028577	AT1G80840.1	45.000	60	31	2	105	162	147	206	1.09e-11	63.2
MsaG028577	AT5G15130.1	42.466	73	38	3	104	172	227	299	1.15e-11	63.5
MsaG028577	AT5G15130.2	42.466	73	38	3	104	172	185	257	1.21e-11	63.5
MsaG028577	AT5G46350.1	48.333	60	30	1	104	162	183	242	1.21e-11	63.2
MsaG028577	AT4G30935.1	39.189	74	44	1	105	177	332	405	1.24e-11	63.5
MsaG028577	AT4G30935.1	42.623	61	35	0	105	165	169	229	4.55e-11	62.0
MsaG028577	AT2G46130.1	50.877	57	27	1	104	159	30	86	1.41e-11	59.7
MsaG028577	AT2G21900.1	46.667	60	31	1	104	162	109	168	2.22e-11	61.2
MsaG028577	AT3G62340.1	35.965	114	60	3	104	204	118	231	2.59e-11	62.0
MsaG028577	AT4G39410.1	50.877	57	27	1	104	159	223	279	2.73e-11	62.0
MsaG028577	AT5G26170.1	49.123	57	28	1	104	159	113	169	3.18e-11	60.1
MsaG028577	AT5G43290.1	50.000	58	28	1	104	160	114	171	6.41e-11	60.8

Find 26 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATTGTTCTTCGTTCGAAAT+TGG	0.227728	5:-64305623	MsaT028577.1:CDS
TTGGATTTGAGGCATGAAAT+TGG	0.257475	5:-64305604	MsaT028577.1:CDS
ATCATGATGATGGGTATAAT+TGG	0.315840	5:-64305459	MsaT028577.1:CDS
GATCTCCTCAATTTCTTCCT+TGG	0.315896	5:-64305718	MsaT028577.1:CDS
ATCATTTGGAAGTGAACAAT+TGG	0.346812	5:-64305188	MsaT028577.1:CDS
ATTGATACTGAAGACTTTGC+AGG	0.359791	5:+64305151	None:intergenic
GACTTGCAAGATCAATCATT+TGG	0.392633	5:-64305202	MsaT028577.1:CDS
TTATCAAGACAGATTGATCT+TGG	0.404285	5:-64305751	MsaT028577.1:CDS
ATAGTTGAGAGAACTGTAGA+TGG	0.406452	5:-64305349	MsaT028577.1:CDS
TATGAAGATAAAGTAGCAAA+AGG	0.433124	5:-64305430	MsaT028577.1:CDS
TGATTGATCTTGCAAGTCAA+TGG	0.446931	5:+64305207	None:intergenic
TTTCAATCTGATTATAGTAA+TGG	0.460671	5:-64305517	MsaT028577.1:CDS
ACAAAGGTACACATAATCAT+TGG	0.470196	5:-64305306	MsaT028577.1:CDS
TTCCTCTTCATTGTAGACTT+AGG	0.480559	5:+64305280	None:intergenic
TTCGTTCGAAATTGGATTTG+AGG	0.491204	5:-64305615	MsaT028577.1:CDS
GATTGATCTTGCAAGTCAAT+GGG	0.496257	5:+64305208	None:intergenic
AAATTCCAAGGAAGAAATTG+AGG	0.514721	5:+64305713	None:intergenic
GATGTAGCTATAGAAATTGA+TGG	0.517372	5:-64305562	MsaT028577.1:CDS
AGAATGATGAATCATGATGA+TGG	0.526833	5:-64305469	MsaT028577.1:CDS
ATTGATCTTCATCAATTGAA+CGG	0.533833	5:+64305687	None:intergenic
ATTGAACGGTTAAAATTCCA+AGG	0.544574	5:+64305701	None:intergenic
TGCCTAAGTCTACAATGAAG+AGG	0.601126	5:-64305282	MsaT028577.1:CDS
GAATGATGAATCATGATGAT+GGG	0.604017	5:-64305468	MsaT028577.1:CDS
ATGGGACCAACTGTCTCTGA+AGG	0.616834	5:+64305226	None:intergenic
ATCGTCAAGACATTATACAA+AGG	0.670302	5:-64305322	MsaT028577.1:CDS
GAAGCTATTATAAATGTACG+TGG	0.742371	5:-64305393	MsaT028577.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	64305147	64305785	64305147	ID=MsaG028577
Chr5	mRNA	64305147	64305785	64305147	ID=MsaT028577.1;Parent=MsaG028577
Chr5	exon	64305147	64305785	64305147	ID=MsaT028577.1.exon1;Parent=MsaT028577.1
Chr5	CDS	64305147	64305785	64305147	ID=cds.MsaT028577.1;Parent=MsaT028577.1

Gene Sequence

>MsaT028577.1

ATGTCTTTTTGCTTATCAAGACAGATTGATCTTGGTTTTGAATCTGATCTCCTCAATTTCTTCCTTGGAATTTTAACCGTTCAATTGATGAAGATCAATTTGATTCTATCTATTGTTGCTGCAATCTTATGTTATTCTCTTATTGTTCTTCGTTCGAAATTGGATTTGAGGCATGAAATTGGAACTTCAAGAGTGCAAGATGATGTAGCTATAGAAATTGATGGTGTAGATAACGATAGAAATGAATTTCAATCTGATTATAGTAATGGTAGCCAACAAAATCAGTCTTTAATAAGAATGATGAATCATGATGATGGGTATAATTGGAAAAGATATGAAGATAAAGTAGCAAAAGGAAGTGAAAATCAAAGAAGCTATTATAAATGTACGTGGCCTAATTGTTTTGTGAAGAAAATAGTTGAGAGAACTGTAGATGGAGAAATCGTCAAGACATTATACAAAGGTACACATAATCATTGGATGCCTAAGTCTACAATGAAGAGGAATTCATCATCTGAGTATCTTTATTCACTTTTACCTTCAGAGACAGTTGGTCCCATTGACTTGCAAGATCAATCATTTGGAAGTGAACAATTGGATTCTGATGAAGAACCTGCAAAGTCTTCAGTATCAATATGA

Protein sequence

>MsaT028577.1

MSFCLSRQIDLGFESDLLNFFLGILTVQLMKINLILSIVAAILCYSLIVLRSKLDLRHEIGTSRVQDDVAIEIDGVDNDRNEFQSDYSNGSQQNQSLIRMMNHDDGYNWKRYEDKVAKGSENQRSYYKCTWPNCFVKKIVERTVDGEIVKTLYKGTHNHWMPKSTMKRNSSSEYLYSLLPSETVGPIDLQDQSFGSEQLDSDEEPAKSSVSI*