Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028588 | GAU13242.1 | 59.756 | 574 | 168 | 7 | 1 | 515 | 53 | 622 | 0.0 | 659 |
MsaG028588 | GAU13242.1 | 87.143 | 70 | 9 | 0 | 515 | 584 | 702 | 771 | 5.57e-28 | 131 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028588 | sp|Q9FGH9|E70B1_ARATH | 51.077 | 325 | 109 | 3 | 18 | 294 | 189 | 511 | 4.47e-93 | 301 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028588 | tr|A0A2Z6M369|A0A2Z6M369_TRISU | 59.756 | 574 | 168 | 7 | 1 | 515 | 53 | 622 | 0.0 | 659 |
MsaG028588 | tr|A0A2Z6M369|A0A2Z6M369_TRISU | 87.143 | 70 | 9 | 0 | 515 | 584 | 702 | 771 | 2.66e-28 | 131 |
Gene ID | Type | Classification |
---|---|---|
MsaG028588 | TF | WRKY |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028588 | MtrunA17_Chr5g0431811 | 50.000 | 602 | 183 | 11 | 1 | 510 | 263 | 838 | 3.71e-178 | 532 |
MsaG028588 | MtrunA17_Chr5g0431811 | 70.330 | 91 | 25 | 1 | 425 | 515 | 837 | 925 | 7.58e-32 | 131 |
MsaG028588 | MtrunA17_Chr5g0431811 | 77.143 | 70 | 16 | 0 | 515 | 584 | 1004 | 1073 | 3.75e-29 | 123 |
MsaG028588 | MtrunA17_Chr5g0431731 | 53.293 | 334 | 97 | 4 | 18 | 294 | 194 | 525 | 2.43e-106 | 333 |
MsaG028588 | MtrunA17_Chr3g0106431 | 47.337 | 338 | 116 | 6 | 17 | 294 | 183 | 518 | 4.85e-88 | 285 |
MsaG028588 | MtrunA17_Chr5g0431871 | 68.889 | 180 | 56 | 0 | 25 | 204 | 1 | 180 | 2.91e-85 | 263 |
MsaG028588 | MtrunA17_Chr5g0431741 | 42.898 | 352 | 140 | 6 | 1 | 293 | 234 | 583 | 1.33e-78 | 262 |
MsaG028588 | MtrunA17_Chr5g0431761 | 55.251 | 219 | 96 | 2 | 1 | 219 | 235 | 451 | 3.45e-77 | 255 |
MsaG028588 | MtrunA17_Chr5g0432041 | 38.483 | 356 | 160 | 6 | 1 | 304 | 229 | 577 | 3.72e-56 | 201 |
MsaG028588 | MtrunA17_Chr5g0432041 | 56.923 | 65 | 28 | 0 | 514 | 578 | 610 | 674 | 2.97e-15 | 79.3 |
MsaG028588 | MtrunA17_Chr5g0432091 | 46.789 | 218 | 110 | 2 | 1 | 215 | 234 | 448 | 3.51e-54 | 196 |
MsaG028588 | MtrunA17_Chr5g0432091 | 40.845 | 71 | 42 | 0 | 224 | 294 | 523 | 593 | 3.96e-11 | 65.9 |
MsaG028588 | MtrunA17_Chr4g0057561 | 29.379 | 354 | 184 | 4 | 13 | 305 | 236 | 584 | 6.46e-47 | 175 |
MsaG028588 | MtrunA17_Chr1g0197101 | 30.449 | 312 | 169 | 2 | 28 | 293 | 208 | 517 | 2.18e-44 | 167 |
MsaG028588 | MtrunA17_Chr1g0177671 | 30.449 | 312 | 169 | 3 | 28 | 293 | 202 | 511 | 7.41e-43 | 162 |
MsaG028588 | MtrunA17_Chr5g0431891 | 44.712 | 208 | 70 | 4 | 5 | 212 | 110 | 272 | 4.72e-42 | 152 |
MsaG028588 | MtrunA17_Chr5g0431991 | 46.429 | 196 | 90 | 3 | 10 | 204 | 235 | 416 | 3.01e-41 | 154 |
MsaG028588 | MtrunA17_Chr5g0431821 | 43.750 | 208 | 72 | 3 | 5 | 212 | 256 | 418 | 5.11e-41 | 154 |
MsaG028588 | MtrunA17_Chr3g0104851 | 29.859 | 355 | 180 | 6 | 1 | 293 | 217 | 564 | 7.23e-36 | 142 |
MsaG028588 | MtrunA17_Chr3g0104851 | 64.062 | 64 | 23 | 0 | 517 | 580 | 606 | 669 | 3.18e-19 | 91.7 |
MsaG028588 | MtrunA17_Chr5g0431881 | 74.390 | 82 | 19 | 1 | 434 | 515 | 1 | 80 | 1.29e-34 | 130 |
MsaG028588 | MtrunA17_Chr5g0431881 | 40.299 | 201 | 90 | 5 | 412 | 584 | 30 | 228 | 1.11e-31 | 122 |
MsaG028588 | MtrunA17_Chr8g0344461 | 35.714 | 196 | 123 | 2 | 25 | 219 | 161 | 354 | 3.24e-34 | 137 |
MsaG028588 | MtrunA17_Chr7g0219041 | 30.841 | 214 | 136 | 2 | 6 | 219 | 217 | 418 | 7.42e-32 | 130 |
MsaG028588 | MtrunA17_Chr7g0224041 | 28.440 | 327 | 166 | 7 | 31 | 291 | 216 | 540 | 2.79e-30 | 125 |
MsaG028588 | MtrunA17_Chr1g0182041 | 25.731 | 342 | 174 | 8 | 25 | 294 | 166 | 499 | 1.07e-27 | 117 |
MsaG028588 | MtrunA17_Chr6g0462011 | 28.152 | 341 | 174 | 7 | 27 | 298 | 284 | 622 | 1.20e-27 | 118 |
MsaG028588 | MtrunA17_Chr3g0086881 | 30.769 | 195 | 133 | 1 | 25 | 219 | 181 | 373 | 1.10e-26 | 114 |
MsaG028588 | MtrunA17_Chr1g0182031 | 32.487 | 197 | 119 | 4 | 25 | 215 | 164 | 352 | 4.19e-25 | 109 |
MsaG028588 | MtrunA17_Chr2g0327741 | 29.442 | 197 | 135 | 2 | 21 | 215 | 153 | 347 | 8.56e-24 | 105 |
MsaG028588 | MtrunA17_Chr4g0030621 | 31.492 | 181 | 121 | 2 | 36 | 215 | 181 | 359 | 8.82e-24 | 105 |
MsaG028588 | MtrunA17_Chr5g0431981 | 37.241 | 145 | 83 | 3 | 6 | 148 | 229 | 367 | 7.86e-21 | 94.7 |
MsaG028588 | MtrunA17_Chr5g0444661 | 33.333 | 213 | 86 | 4 | 123 | 283 | 162 | 370 | 2.46e-18 | 87.8 |
MsaG028588 | MtrunA17_Chr5g0431901 | 69.091 | 55 | 17 | 0 | 1 | 55 | 86 | 140 | 4.60e-17 | 78.2 |
MsaG028588 | MtrunA17_Chr5g0431971 | 52.239 | 67 | 32 | 0 | 515 | 581 | 261 | 327 | 5.47e-17 | 82.4 |
MsaG028588 | MtrunA17_Chr1g0214001 | 26.531 | 196 | 138 | 2 | 24 | 215 | 197 | 390 | 4.27e-14 | 75.5 |
MsaG028588 | MtrunA17_Chr5g0431801 | 53.425 | 73 | 31 | 2 | 1 | 72 | 234 | 304 | 6.07e-13 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028588 | AT5G58430.1 | 51.077 | 325 | 109 | 3 | 18 | 294 | 189 | 511 | 4.54e-94 | 301 |
MsaG028588 | AT1G07000.1 | 40.673 | 327 | 142 | 4 | 18 | 294 | 171 | 495 | 2.10e-73 | 246 |
MsaG028588 | AT5G50380.1 | 31.173 | 324 | 164 | 4 | 22 | 291 | 232 | 550 | 4.11e-50 | 184 |
MsaG028588 | AT5G03540.2 | 31.715 | 309 | 162 | 3 | 36 | 297 | 95 | 401 | 1.83e-46 | 171 |
MsaG028588 | AT5G03540.1 | 31.715 | 309 | 162 | 3 | 36 | 297 | 210 | 516 | 5.36e-46 | 172 |
MsaG028588 | AT5G03540.3 | 31.715 | 309 | 162 | 3 | 36 | 297 | 236 | 542 | 1.07e-45 | 171 |
MsaG028588 | AT5G52340.1 | 29.712 | 313 | 172 | 3 | 28 | 294 | 202 | 512 | 5.17e-40 | 155 |
MsaG028588 | AT3G14090.1 | 26.822 | 343 | 187 | 6 | 25 | 305 | 173 | 513 | 4.47e-35 | 140 |
MsaG028588 | AT1G54090.1 | 33.333 | 195 | 126 | 2 | 25 | 219 | 170 | 360 | 2.00e-32 | 132 |
MsaG028588 | AT1G72470.1 | 33.005 | 203 | 132 | 2 | 19 | 219 | 172 | 372 | 5.16e-32 | 131 |
MsaG028588 | AT5G52350.1 | 26.688 | 311 | 180 | 3 | 28 | 292 | 156 | 464 | 7.31e-29 | 121 |
MsaG028588 | AT3G29400.1 | 31.959 | 194 | 130 | 1 | 22 | 215 | 194 | 385 | 1.56e-28 | 121 |
MsaG028588 | AT5G13990.1 | 28.291 | 357 | 188 | 9 | 11 | 303 | 236 | 588 | 8.28e-28 | 119 |
MsaG028588 | AT5G61010.1 | 24.522 | 314 | 176 | 5 | 26 | 280 | 205 | 516 | 1.99e-25 | 111 |
MsaG028588 | AT5G61010.2 | 24.522 | 314 | 176 | 5 | 26 | 280 | 205 | 516 | 1.99e-25 | 111 |
MsaG028588 | AT2G28650.1 | 26.349 | 315 | 175 | 5 | 36 | 295 | 152 | 464 | 5.63e-25 | 109 |
MsaG028588 | AT5G59730.1 | 30.108 | 186 | 127 | 2 | 31 | 215 | 165 | 348 | 3.90e-24 | 107 |
MsaG028588 | AT5G59730.2 | 30.108 | 186 | 127 | 2 | 31 | 215 | 165 | 348 | 5.44e-24 | 107 |
MsaG028588 | AT5G13150.1 | 34.574 | 188 | 114 | 3 | 30 | 215 | 209 | 389 | 9.46e-23 | 103 |
MsaG028588 | AT2G39380.1 | 30.612 | 196 | 123 | 2 | 31 | 215 | 170 | 363 | 9.45e-22 | 100 |
MsaG028588 | AT3G55150.1 | 27.907 | 215 | 145 | 3 | 36 | 244 | 187 | 397 | 2.91e-20 | 95.5 |
MsaG028588 | AT1G07725.1 | 28.108 | 185 | 129 | 2 | 31 | 215 | 175 | 355 | 9.95e-19 | 90.5 |
MsaG028588 | AT2G28640.1 | 27.807 | 187 | 133 | 1 | 29 | 215 | 153 | 337 | 1.85e-18 | 89.7 |
MsaG028588 | AT3G09530.1 | 26.214 | 206 | 147 | 3 | 13 | 215 | 147 | 350 | 1.25e-16 | 84.0 |
MsaG028588 | AT3G09520.1 | 23.267 | 202 | 139 | 3 | 20 | 212 | 159 | 353 | 4.89e-15 | 79.0 |
Find 140 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGAGGCCTTTGATGGTTTC+TGG | 0.098731 | 5:-64533899 | None:intergenic |
ATCGATTATTCCCCACTTTA+TGG | 0.162166 | 5:+64534454 | MsaT028588.1:CDS |
TTCATACCCCTTTGATTCTT+TGG | 0.188604 | 5:-64534782 | None:intergenic |
ATACTTGATAATTTGTTTCT+TGG | 0.188726 | 5:+64554682 | MsaT028588.1:CDS |
TGGGGTGATGCAAAGGATTA+TGG | 0.227539 | 5:+64534474 | MsaT028588.1:CDS |
CAAAATAACGACTCAAATTC+TGG | 0.228835 | 5:-64534334 | None:intergenic |
AATCTTCATCGGGAAGTTTC+AGG | 0.234190 | 5:+64554600 | MsaT028588.1:CDS |
CGCTGCAGATTTCTCCTTCA+TGG | 0.235810 | 5:+64534189 | MsaT028588.1:CDS |
TGCCTAGAGCTTAGATTATT+CGG | 0.241576 | 5:+64534010 | MsaT028588.1:CDS |
ATTAATTAACAGCAGGAAAA+AGG | 0.282805 | 5:+64535042 | MsaT028588.1:intron |
TGCCTCAGGGATAGAGCTTA+TGG | 0.290372 | 5:-64554017 | None:intergenic |
AGAGGGGCCATCGTAGAATT+TGG | 0.293189 | 5:-64534527 | None:intergenic |
GGTTCCTAGTTCATTATCTT+TGG | 0.293525 | 5:-64534599 | None:intergenic |
CAGCAGAGGAACGTTGTTAA+TGG | 0.326567 | 5:+64554121 | MsaT028588.1:CDS |
ACGACTCAAATTCTGGAATT+AGG | 0.326740 | 5:-64534327 | None:intergenic |
GAAAACACGCTCTGAAAGTT+TGG | 0.326892 | 5:+64534644 | MsaT028588.1:CDS |
ATAATTTGTTTCTTGGAAAC+AGG | 0.334894 | 5:+64554689 | MsaT028588.1:CDS |
ATATCTTCCGCACCACAATT+TGG | 0.335625 | 5:+64535088 | MsaT028588.1:CDS |
TAAACAAACGCTCTGGTGAT+AGG | 0.336644 | 5:-64534273 | None:intergenic |
TCGATTATTCCCCACTTTAT+GGG | 0.342510 | 5:+64534455 | MsaT028588.1:CDS |
TAATGAACTAGGAACCCTTT+TGG | 0.342586 | 5:+64534606 | MsaT028588.1:CDS |
TGTTTCCTCGAGGCCTTTGA+TGG | 0.342680 | 5:-64533906 | None:intergenic |
GCTTACGAATATATTGAGTA+TGG | 0.346593 | 5:+64554640 | MsaT028588.1:CDS |
CTCCTTCATGGAGATTTGTA+AGG | 0.366076 | 5:+64534201 | MsaT028588.1:CDS |
GCCTAGAGCTTAGATTATTC+GGG | 0.370088 | 5:+64534011 | MsaT028588.1:CDS |
ATCAGTACGGTGTGTCTCTA+AGG | 0.374174 | 5:+64534359 | MsaT028588.1:CDS |
GGAATGAAGCAGTTACAATA+TGG | 0.380641 | 5:+64534380 | MsaT028588.1:CDS |
CTCCAGGTAAACCCGTCTTT+CGG | 0.405881 | 5:-64535130 | None:intergenic |
CTTTGTGATCGCATCTTCCT+TGG | 0.407761 | 5:+64534157 | MsaT028588.1:CDS |
GTTACAATATGGAAGAGATT+GGG | 0.408970 | 5:+64534391 | MsaT028588.1:CDS |
CTGTTCATGATAATGATCTA+AGG | 0.409563 | 5:+64554530 | MsaT028588.1:CDS |
TCACAAAGTCGTCGCTCGCC+AGG | 0.421916 | 5:-64534142 | None:intergenic |
GCTTCCCTTGGCAACAAAAT+CGG | 0.437587 | 5:-64534251 | None:intergenic |
GAATCCAATCATTCCCCAAA+AGG | 0.440716 | 5:-64534621 | None:intergenic |
ATCACTATTGTTCTCATCTC+CGG | 0.442936 | 5:-64535067 | None:intergenic |
AATCGGCGAAATTTAGAAGT+TGG | 0.443402 | 5:-64534234 | None:intergenic |
AGTTACAATATGGAAGAGAT+TGG | 0.452243 | 5:+64534390 | MsaT028588.1:CDS |
TCACCTTCATACCCCTTTCA+CGG | 0.459744 | 5:-64534747 | None:intergenic |
GTCGTCGCTCGCCAGGGAAA+AGG | 0.460574 | 5:-64534135 | None:intergenic |
GTCGAAAACTGGCCGTGAAA+GGG | 0.464673 | 5:+64534735 | MsaT028588.1:CDS |
TGTTGAAGAACACTCTCAAT+TGG | 0.466544 | 5:+64533838 | MsaT028588.1:CDS |
CACTTTATGGGGTGATGCAA+AGG | 0.472128 | 5:+64534467 | MsaT028588.1:CDS |
AACACCTTGCTGCCAGCGTA+TGG | 0.474940 | 5:+64554577 | MsaT028588.1:CDS |
GGAGGAGCTAGCTTTGCCTC+AGG | 0.476374 | 5:-64554031 | None:intergenic |
CAAAGGTTATGTTGAGTGAT+GGG | 0.478213 | 5:+64533930 | MsaT028588.1:CDS |
CACCATCGCAACGACGAGAA+AGG | 0.480838 | 5:+64534830 | MsaT028588.1:CDS |
TGAGGCAAAGCTAGCTCCTC+CGG | 0.485381 | 5:+64554033 | MsaT028588.1:CDS |
GATAAAATGCCACCGAAAGA+CGG | 0.485425 | 5:+64535118 | MsaT028588.1:CDS |
CCAACGACATTGTCCATCAT+AGG | 0.492648 | 5:-64554073 | None:intergenic |
CCTTTGGGTATTTGAAGCCA+AGG | 0.497109 | 5:-64535174 | None:intergenic |
CGATTATTCCCCACTTTATG+GGG | 0.497356 | 5:+64534456 | MsaT028588.1:CDS |
AAAGAATCAAAGGGGTATGA+AGG | 0.499987 | 5:+64534784 | MsaT028588.1:CDS |
CACCGAAAGACGGGTTTACC+TGG | 0.499989 | 5:+64535128 | MsaT028588.1:CDS |
AAGGGGTATGAAGGTGAATG+TGG | 0.504500 | 5:+64534753 | MsaT028588.1:CDS |
AGATTGGGGCAAACAATAAG+AGG | 0.504980 | 5:+64534406 | MsaT028588.1:CDS |
CTCTGGTGATAGGCTTCCCT+TGG | 0.507351 | 5:-64534263 | None:intergenic |
AAGAAAACAATGGGCACTAT+CGG | 0.508716 | 5:+64534685 | MsaT028588.1:CDS |
TACCTTTCTCGTCGTTGCGA+TGG | 0.509409 | 5:-64534832 | None:intergenic |
AATCCAATCATTCCCCAAAA+GGG | 0.511982 | 5:-64534620 | None:intergenic |
TCGATAACCATATTGAAAAG+TGG | 0.514797 | 5:+64534083 | MsaT028588.1:CDS |
GGGGTATGAAGGAGATATGC+AGG | 0.515108 | 5:+64534795 | MsaT028588.1:CDS |
GGTCAATACAAGAAAACAAT+GGG | 0.515287 | 5:+64534676 | MsaT028588.1:CDS |
GGTCGAAAACTGGCCGTGAA+AGG | 0.516864 | 5:+64534734 | MsaT028588.1:CDS |
TTATCTTCGTTGCCAAATTG+TGG | 0.517900 | 5:-64535100 | None:intergenic |
ATAAAATGCCACCGAAAGAC+GGG | 0.518679 | 5:+64535119 | MsaT028588.1:CDS |
CCAGCGTATGGAATCTTCAT+CGG | 0.519610 | 5:+64554589 | MsaT028588.1:CDS |
CTTTGCATCACCCCATAAAG+TGG | 0.522174 | 5:-64534466 | None:intergenic |
GCAAAGGTTATGTTGAGTGA+TGG | 0.523762 | 5:+64533929 | MsaT028588.1:CDS |
TTCTACGATGGCCCCTCTCT+AGG | 0.524336 | 5:+64534532 | MsaT028588.1:CDS |
CAGCGTATGGAATCTTCATC+GGG | 0.526606 | 5:+64554590 | MsaT028588.1:CDS |
GGGTTTACCTGGAGAAAATA+CGG | 0.528343 | 5:+64535139 | MsaT028588.1:CDS |
TTGTTTCTTGGAAACAGGAC+AGG | 0.528742 | 5:+64554694 | MsaT028588.1:CDS |
CTAGCTCCTCCGGCAGATGG+TGG | 0.528768 | 5:+64554043 | MsaT028588.1:CDS |
TGGCCGTGAAAGGGGTATGA+AGG | 0.531406 | 5:+64534744 | MsaT028588.1:CDS |
AAGCTAGCTCCTCCGGCAGA+TGG | 0.536075 | 5:+64554040 | MsaT028588.1:CDS |
CATGAACAGACCATGTGCAC+TGG | 0.537808 | 5:-64554516 | None:intergenic |
TCCTTCATGGAGATTTGTAA+GGG | 0.539738 | 5:+64534202 | MsaT028588.1:CDS |
CATGATAATGATCTAAGGAC+GGG | 0.548955 | 5:+64554535 | MsaT028588.1:CDS |
GGAGGTTCCAAAGAATCAAA+GGG | 0.550547 | 5:+64534775 | MsaT028588.1:CDS |
GGATGATGCCCACCATCTGC+CGG | 0.550852 | 5:-64554052 | None:intergenic |
AGAACTGTTAGAGAGCATAC+TGG | 0.552447 | 5:+64554186 | MsaT028588.1:CDS |
GACAAGAAAGCGACTCAGTA+CGG | 0.553764 | 5:-64549902 | None:intergenic |
TATCGGCTCCGAATCAATGC+AGG | 0.555102 | 5:+64534702 | MsaT028588.1:CDS |
AGGGGTATGAAGGTGAATGT+GGG | 0.556231 | 5:+64534754 | MsaT028588.1:CDS |
GCAAAGGATTATGGACACAT+TGG | 0.556276 | 5:+64534483 | MsaT028588.1:CDS |
TAGCTCCTCCGGCAGATGGT+GGG | 0.556966 | 5:+64554044 | MsaT028588.1:CDS |
CGCTTTCTTGTCCTGTAGCG+CGG | 0.561526 | 5:+64549913 | MsaT028588.1:CDS |
GGGAGGTTCCAAAGAATCAA+AGG | 0.564686 | 5:+64534774 | MsaT028588.1:CDS |
ATATCTTATTCAAATGCTGG+TGG | 0.567816 | 5:+64533799 | None:intergenic |
TACGGCAAGAAAGAGATCCT+TGG | 0.571266 | 5:+64535157 | MsaT028588.1:CDS |
TGGTGGGCATCATCCTATGA+TGG | 0.571855 | 5:+64554060 | MsaT028588.1:CDS |
AAGAAAATATAGCCTAGAGA+GGG | 0.573467 | 5:-64534544 | None:intergenic |
TCCCTTACAAATCTCCATGA+AGG | 0.574133 | 5:-64534203 | None:intergenic |
CTGCAGCGTGTGAGTATCCA+AGG | 0.579982 | 5:-64534174 | None:intergenic |
CACAAAGTCGTCGCTCGCCA+GGG | 0.581520 | 5:-64534141 | None:intergenic |
GACCGACTCTAACTTCATGA+TGG | 0.581711 | 5:+64533865 | MsaT028588.1:CDS |
CATTCATAGTATGCCATGGA+AGG | 0.582799 | 5:+64534057 | MsaT028588.1:CDS |
CAAGAAAATATAGCCTAGAG+AGG | 0.585806 | 5:-64534545 | None:intergenic |
CGGTCAATACAAGAAAACAA+TGG | 0.587580 | 5:+64534675 | MsaT028588.1:CDS |
ATGACCAAAGATAATGAACT+AGG | 0.592112 | 5:+64534595 | MsaT028588.1:CDS |
CCTATGATGGACAATGTCGT+TGG | 0.593150 | 5:+64554073 | MsaT028588.1:CDS |
TTTGCATCACCCCATAAAGT+GGG | 0.595593 | 5:-64534465 | None:intergenic |
TCGAAAACTGGCCGTGAAAG+GGG | 0.597451 | 5:+64534736 | MsaT028588.1:CDS |
ACCCGAATAATCTAAGCTCT+AGG | 0.597703 | 5:-64534012 | None:intergenic |
AAGTGTACAATAATTGCCGT+AGG | 0.601558 | 5:+64533972 | MsaT028588.1:CDS |
GTTGAGTGATGGGTTTGAGA+AGG | 0.601587 | 5:+64533940 | MsaT028588.1:CDS |
AGGACATTCATAGTATGCCA+TGG | 0.602167 | 5:+64534053 | MsaT028588.1:CDS |
TTCGTTGCCAAATTGTGGTG+CGG | 0.605047 | 5:-64535095 | None:intergenic |
AGGAACGTTGTTAATGGAGA+CGG | 0.608385 | 5:+64554127 | MsaT028588.1:CDS |
CAGGTAAACCCGTCTTTCGG+TGG | 0.613477 | 5:-64535127 | None:intergenic |
GATTCCATACGCTGGCAGCA+AGG | 0.613878 | 5:-64554581 | None:intergenic |
GGTATGAAGGTGAATGTGGG+AGG | 0.614369 | 5:+64534757 | MsaT028588.1:CDS |
TTACAATATGGAAGAGATTG+GGG | 0.617743 | 5:+64534392 | MsaT028588.1:CDS |
GAGGAGCTAGCTTTGCCTCA+GGG | 0.619143 | 5:-64554030 | None:intergenic |
TCATGATAATGATCTAAGGA+CGG | 0.619583 | 5:+64554534 | MsaT028588.1:CDS |
GAAATTTAGAAGTTGGATGA+CGG | 0.621698 | 5:-64534227 | None:intergenic |
CTGAAGCCAGAAACCATCAA+AGG | 0.622060 | 5:+64533893 | MsaT028588.1:CDS |
GCGTTTGTTTAAAATGCTCG+AGG | 0.622531 | 5:+64534285 | MsaT028588.1:CDS |
ATCCATCATGAAGTTAGAGT+CGG | 0.626322 | 5:-64533867 | None:intergenic |
TATGCAGAATCCAGTGCACA+TGG | 0.634816 | 5:+64554506 | MsaT028588.1:intron |
TGATGCCCACCATCTGCCGG+AGG | 0.639878 | 5:-64554049 | None:intergenic |
AGTGTACAATAATTGCCGTA+GGG | 0.640741 | 5:+64533973 | MsaT028588.1:CDS |
TGGTTATCGAGATCCTTCCA+TGG | 0.644236 | 5:-64534070 | None:intergenic |
CCTTGGCTTCAAATACCCAA+AGG | 0.649009 | 5:+64535174 | MsaT028588.1:CDS |
AGGCCTCGAGGAAACAGCAA+AGG | 0.649096 | 5:+64533913 | MsaT028588.1:CDS |
CCGATGAAGATTCCATACGC+TGG | 0.650099 | 5:-64554589 | None:intergenic |
TAACCTTTGCTGTTTCCTCG+AGG | 0.661444 | 5:-64533916 | None:intergenic |
GCAAGTTCCAAATTCTACGA+TGG | 0.664577 | 5:+64534520 | MsaT028588.1:CDS |
TGAAGAACACTCTCAATTGG+TGG | 0.668975 | 5:+64533841 | MsaT028588.1:CDS |
CTGCTATAAGATCACAGCAG+AGG | 0.672431 | 5:+64554107 | MsaT028588.1:CDS |
AGAAAATATAGCCTAGAGAG+GGG | 0.678048 | 5:-64534543 | None:intergenic |
ACTCGTTCAAGCAATCCCTA+CGG | 0.679495 | 5:-64533988 | None:intergenic |
GCGGACACAAAACATAGTAG+TGG | 0.680011 | 5:+64549932 | MsaT028588.1:CDS |
CTGAAAGTTTGGCACTACGA+CGG | 0.682297 | 5:+64534655 | MsaT028588.1:CDS |
TTGCATCACCCCATAAAGTG+GGG | 0.689193 | 5:-64534464 | None:intergenic |
ATCCATAAGCTCTATCCCTG+AGG | 0.704858 | 5:+64554015 | MsaT028588.1:CDS |
GTTGCAAAAGCTCAACATCG+AGG | 0.726407 | 5:+64534033 | MsaT028588.1:CDS |
AAACATAGTAGTGGAGAACG+TGG | 0.730511 | 5:+64549941 | MsaT028588.1:CDS |
AGAAACCATCAAAGGCCTCG+AGG | 0.730932 | 5:+64533901 | MsaT028588.1:CDS |
GAGGTTCCAAAGAATCAAAG+GGG | 0.760630 | 5:+64534776 | MsaT028588.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 64533812 | 64554726 | 64533812 | ID=MsaG028588 |
Chr5 | mRNA | 64533812 | 64554726 | 64533812 | ID=MsaT028588.1;Parent=MsaG028588 |
Chr5 | exon | 64533812 | 64534851 | 64533812 | ID=MsaT028588.1.exon1;Parent=MsaT028588.1 |
Chr5 | CDS | 64533812 | 64534851 | 64533812 | ID=cds.MsaT028588.1;Parent=MsaT028588.1 |
Chr5 | exon | 64535054 | 64535195 | 64535054 | ID=MsaT028588.1.exon2;Parent=MsaT028588.1 |
Chr5 | CDS | 64535054 | 64535195 | 64535054 | ID=cds.MsaT028588.1;Parent=MsaT028588.1 |
Chr5 | exon | 64549882 | 64549981 | 64549882 | ID=MsaT028588.1.exon3;Parent=MsaT028588.1 |
Chr5 | CDS | 64549882 | 64549981 | 64549882 | ID=cds.MsaT028588.1;Parent=MsaT028588.1 |
Chr5 | exon | 64554011 | 64554272 | 64554011 | ID=MsaT028588.1.exon4;Parent=MsaT028588.1 |
Chr5 | CDS | 64554011 | 64554272 | 64554011 | ID=cds.MsaT028588.1;Parent=MsaT028588.1 |
Chr5 | exon | 64554513 | 64554726 | 64554513 | ID=MsaT028588.1.exon5;Parent=MsaT028588.1 |
Chr5 | CDS | 64554513 | 64554726 | 64554513 | ID=cds.MsaT028588.1;Parent=MsaT028588.1 |
Gene Sequence |
Protein sequence |