AlfalfaGEDB | MsaG028627

M. sativa ssp. caerulea / MsaG028627

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF06203.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028627	XP_003615824.1	95.392	217	7	1	1	214	1	217	2.59e-148	421

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028627	sp\|Q9LU68\|CIA2_ARATH	53.846	91	40	2	123	213	337	425	5.66e-22	95.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028627	tr\|B7FH76\|B7FH76_MEDTR	95.392	217	7	1	1	214	1	217	1.24e-148	421

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TFs/TRs:

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Gene ID	Type	Classification
MsaG028627	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG028627	0.891505	8.270460e-74	2.637158e-70
MsaG000048	MsaG028627	0.869178	7.623125e-66	8.534770e-63
MsaG000049	MsaG028627	0.802026	1.144258e-48	1.619675e-46
MsaG000069	MsaG028627	0.829968	6.871614e-55	1.986955e-52
MsaG000137	MsaG028627	0.803401	5.973933e-49	8.727302e-47
MsaG000202	MsaG028627	0.856219	7.237691e-62	4.887644e-59
MsaG000216	MsaG028627	0.801708	1.329483e-48	1.868267e-46
MsaG000219	MsaG028627	0.843180	3.061812e-58	1.322293e-55
MsaG000253	MsaG028627	0.853850	3.503799e-61	2.172526e-58
MsaG000286	MsaG028627	0.901764	4.467981e-78	2.535073e-74

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028627	MtrunA17_Chr5g0431351	95.392	217	7	1	1	214	1	217	2.38e-152	421
MsaG028627	MtrunA17_Chr4g0071811	54.348	92	38	2	126	213	293	384	1.72e-22	94.0
MsaG028627	MtrunA17_Chr7g0226451	39.098	133	42	2	120	213	219	351	2.19e-20	87.8
MsaG028627	MtrunA17_Chr1g0209861	44.144	111	42	3	121	213	316	424	1.58e-19	85.9
MsaG028627	MtrunA17_Chr8g0390971	35.567	194	81	6	45	213	226	400	6.08e-19	84.3
MsaG028627	MtrunA17_Chr1g0150471	49.275	69	32	1	145	213	232	297	4.11e-14	69.7
MsaG028627	MtrunA17_Chr3g0136701	67.442	43	14	0	171	213	232	274	1.48e-11	62.4
MsaG028627	MtrunA17_Chr4g0072871	67.442	43	14	0	171	213	298	340	3.09e-11	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028627	AT1G07050.1	63.964	111	29	4	109	213	88	193	8.59e-38	130
MsaG028627	AT1G07050.2	61.905	105	29	4	109	207	88	187	7.79e-33	117
MsaG028627	AT5G14370.1	53.211	109	36	3	120	213	228	336	2.99e-28	108
MsaG028627	AT4G25990.1	53.922	102	39	3	116	213	286	383	1.34e-23	97.4
MsaG028627	AT5G57180.2	53.846	91	40	2	123	213	337	425	5.75e-23	95.9
MsaG028627	AT1G73870.1	41.844	141	58	5	91	213	253	387	2.26e-20	88.6
MsaG028627	AT4G25990.2	47.009	117	39	4	116	213	286	398	7.77e-20	87.0
MsaG028627	AT4G25990.3	52.083	96	38	3	116	207	286	377	1.82e-19	85.9
MsaG028627	AT1G49130.1	52.747	91	34	3	125	213	237	320	2.86e-19	84.7
MsaG028627	AT1G49130.2	51.648	91	35	2	125	213	230	313	3.28e-19	84.3

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Find 33 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTGACCTTGATTCT+TGG	0.281388	5:+66079628	None:intergenic
AACATATGAGCCACTATTGG+AGG	0.534168	5:+66080478	None:intergenic
AAGAGAGAAAATTACAATGA+TGG	0.429279	5:-66080626	MsaT028627.1:CDS
ACTAACATATGAGCCACTAT+TGG	0.440550	5:+66080475	None:intergenic
ACTTCATGTTCTTCTTTCTT+TGG	0.183818	5:+66080902	None:intergenic
AGGGATTTCCCTTTGATGAA+GGG	0.520507	5:-66080697	MsaT028627.1:CDS
AGTGTAAGATTTGTTGAAGT+TGG	0.374346	5:+66080853	None:intergenic
ATAGTAGTAATGAGCTTCAT+TGG	0.401933	5:-66080736	MsaT028627.1:CDS
ATATGAGCCACTATTGGAGG+AGG	0.606351	5:+66080481	None:intergenic
CATTAGCCCAAAGAGAGCCA+CGG	0.677020	5:+66080522	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	66079503	66080951	66079503	ID=MsaG028627
Chr5	mRNA	66079503	66080951	66079503	ID=MsaT028627.1;Parent=MsaG028627
Chr5	exon	66079503	66079526	66079503	ID=MsaT028627.1.exon3;Parent=MsaT028627.1
Chr5	CDS	66079503	66079526	66079503	ID=cds.MsaT028627.1;Parent=MsaT028627.1
Chr5	exon	66079639	66079788	66079639	ID=MsaT028627.1.exon2;Parent=MsaT028627.1
Chr5	CDS	66079639	66079788	66079639	ID=cds.MsaT028627.1;Parent=MsaT028627.1
Chr5	exon	66080481	66080951	66080481	ID=MsaT028627.1.exon1;Parent=MsaT028627.1
Chr5	CDS	66080481	66080951	66080481	ID=cds.MsaT028627.1;Parent=MsaT028627.1

Gene Sequence

>MsaT028627.1

ATGAGATACACTTCATCTCTTAGAAGTCCAAAGAAAGAAGAACATGAAGTACCAGACGCTACCACTCAAATACCATCCAACTTCAACAAATCTTACACTAATGAAGATTTCTATCTTTTCGACGAACTCGAAGAGTACTTGAACATTGAAGAAGAAGAAGAACAAAAGGTATCATCACCACAAAACACTTGTAATAGTAGTAATGAGCTTCATTGGGATATCATGGAATGGGAGGGATTTCCCTTTGATGAAGGGAAAGATGAGAATATAAGCAAATGCAATTATGAGGAGAAGAAGATAATAAAGAGAGAAAATTACAATGATGGTTTTTGGGAAGTGGATGATGAAAAGAGTGTAGCTTTGAATTTGAATTTGAACTATCAAGAGGTTTTGGATGCATGGTCTGACCGTGGCTCTCTTTGGGCTAATGATTGTTCTTTTTCATTTTCCTCCTCCAATAGTGGCTCATATATGGGAGAAGTGCCAATATTGGAAGAAGAGAGAGCAAGAAGAGAAGCAAGTGTTCTTAGGTATAAAGAAAAACGTCAGAACAGATTGTTCTCAAAGAAGATAAGATACCAAGTTCGAAAATTAAACGCTGATAAAAGACCAAGAATCAAGGGTCGCTTTGTGAAGAGACATTGA

Protein sequence

>MsaT028627.1

MRYTSSLRSPKKEEHEVPDATTQIPSNFNKSYTNEDFYLFDELEEYLNIEEEEEQKVSSPQNTCNSSNELHWDIMEWEGFPFDEGKDENISKCNYEEKKIIKRENYNDGFWEVDDEKSVALNLNLNYQEVLDAWSDRGSLWANDCSFSFSSSNSGSYMGEVPILEEERARREASVLRYKEKRQNRLFSKKIRYQVRKLNADKRPRIKGRFVKRH*