AlfalfaGEDB | MsaG028669

M. sativa ssp. caerulea / MsaG028669

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028669	XP_039690713.1	85.036	274	32	1	1	265	1	274	1.49e-171	484

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028669	sp\|Q8L3W1\|VRN1_ARATH	48.485	99	51	0	21	119	6	104	4.85e-25	104

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028669	tr\|G7KE59\|G7KE59_MEDTR	85.036	274	32	1	1	265	1	274	7.14e-172	484

TFs/TRs:

Gene ID	Type	Classification
MsaG028669	TF	B3

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000213	MsaG028669	0.817670	5.090649e-52	1.053488e-49
MsaG000491	MsaG028669	0.882846	1.577892e-70	3.257063e-67
MsaG000671	MsaG028669	0.857190	3.761993e-62	2.632005e-59
MsaG000730	MsaG028669	0.852045	1.143357e-60	6.652846e-58
MsaG000733	MsaG028669	0.847831	1.704377e-59	8.582945e-57
MsaG000858	MsaG028669	0.812514	7.016158e-51	1.274396e-48
MsaG002560	MsaG028669	0.822345	4.384847e-53	1.026365e-50
MsaG002563	MsaG028669	0.821161	8.214591e-53	1.863140e-50
MsaG003090	MsaG028669	0.847345	2.314386e-59	1.146516e-56
MsaG003269	MsaG028669	0.853379	4.777864e-61	2.913378e-58
MsaG003399	MsaG028669	0.800139	2.770427e-48	3.757491e-46
MsaG003520	MsaG028669	0.881929	3.391129e-70	6.699160e-67
MsaG003565	MsaG028669	0.835480	2.986321e-56	1.014811e-53
MsaG003631	MsaG028669	0.846071	5.142839e-59	2.441408e-56
MsaG003658	MsaG028669	0.825148	9.739587e-54	2.459943e-51
MsaG003828	MsaG028669	0.917316	1.550435e-85	2.408832e-81
MsaG003968	MsaG028669	0.841656	7.728968e-58	3.178974e-55
MsaG003974	MsaG028669	0.808306	5.625686e-50	9.222532e-48
MsaG004115	MsaG028669	0.840036	2.046121e-57	7.996755e-55
MsaG004116	MsaG028669	0.884135	5.326183e-71	1.169761e-67
MsaG004340	MsaG028669	0.806081	1.656874e-49	2.576155e-47
MsaG004422	MsaG028669	0.862776	7.906698e-64	6.840458e-61
MsaG004759	MsaG028669	0.848654	1.012331e-59	5.240651e-57
MsaG004780	MsaG028669	0.800225	2.661499e-48	3.616800e-46
MsaG004923	MsaG028669	0.868837	9.826174e-66	1.084749e-62
MsaG004912	MsaG028669	0.872170	8.001518e-67	1.017095e-63
MsaG005447	MsaG028669	0.882827	1.603420e-70	3.306837e-67
MsaG005451	MsaG028669	0.904718	2.155093e-79	1.459649e-75
MsaG005618	MsaG028669	0.831265	3.320540e-55	9.964277e-53
MsaG005591	MsaG028669	0.851967	1.202841e-60	6.979937e-58
MsaG006160	MsaG028669	0.814143	3.090411e-51	5.846462e-49
MsaG006338	MsaG028669	0.800184	2.713288e-48	3.683693e-46
MsaG006407	MsaG028669	0.804635	3.317575e-49	4.987132e-47
MsaG006510	MsaG028669	0.899647	3.697032e-77	1.852353e-73
MsaG006752	MsaG028669	0.888063	1.793435e-72	4.784476e-69
MsaG006843	MsaG028669	0.834466	5.364317e-56	1.768402e-53
MsaG006862	MsaG028669	0.811248	1.319443e-50	2.322977e-48
MsaG006893	MsaG028669	0.804549	3.456657e-49	5.185939e-47
MsaG006891	MsaG028669	0.850563	2.984605e-60	1.649279e-57
MsaG006934	MsaG028669	0.815629	1.452593e-51	2.853052e-49
MsaG006981	MsaG028669	0.830252	5.865064e-55	1.709600e-52
MsaG007222	MsaG028669	0.850322	3.486208e-60	1.910188e-57
MsaG007334	MsaG028669	0.894216	6.804708e-75	2.512051e-71
MsaG007500	MsaG028669	0.875395	6.609595e-68	9.671772e-65
MsaG007713	MsaG028669	0.813600	4.064467e-51	7.585498e-49
MsaG008171	MsaG028669	0.878404	6.052110e-69	1.014584e-65
MsaG008404	MsaG028669	0.858156	1.951204e-62	1.415204e-59
MsaG008428	MsaG028669	0.853027	6.020707e-61	3.626091e-58
MsaG008896	MsaG028669	0.909053	2.094124e-81	1.862004e-77
MsaG009071	MsaG028669	0.805126	2.621769e-49	3.986491e-47
MsaG010243	MsaG028669	0.842294	5.249355e-58	2.203504e-55
MsaG010245	MsaG028669	0.852048	1.141457e-60	6.642375e-58
MsaG010448	MsaG028669	0.812555	6.873928e-51	1.249823e-48
MsaG010862	MsaG028669	0.802846	7.769786e-49	1.120610e-46
MsaG010945	MsaG028669	0.824690	1.248109e-53	3.113039e-51
MsaG011125	MsaG028669	0.824653	1.273327e-53	3.172658e-51
MsaG011242	MsaG028669	0.845727	6.369889e-59	2.989789e-56
MsaG011426	MsaG028669	0.932952	1.092590e-94	5.681297e-90
MsaG011534	MsaG028669	0.894104	7.548422e-75	2.769780e-71
MsaG011808	MsaG028669	0.925728	3.279643e-90	9.518028e-86
MsaG011884	MsaG028669	0.843326	2.799918e-58	1.214924e-55
MsaG012084	MsaG028669	0.814467	2.622167e-51	5.001261e-49
MsaG012182	MsaG028669	0.815331	1.690706e-51	3.295756e-49
MsaG012377	MsaG028669	0.933597	4.116392e-95	2.260312e-90
MsaG012469	MsaG028669	0.803152	6.723498e-49	9.765840e-47
MsaG013867	MsaG028669	0.819633	1.834629e-52	3.995698e-50
MsaG013878	MsaG028669	0.920743	2.231226e-87	4.437899e-83
MsaG014144	MsaG028669	0.823064	2.989047e-53	7.133521e-51
MsaG014220	MsaG028669	0.809943	2.518207e-50	4.294432e-48
MsaG015359	MsaG028669	0.806504	1.350895e-49	2.121601e-47
MsaG016552	MsaG028669	0.830156	6.187564e-55	1.798750e-52
MsaG016655	MsaG028669	0.837671	8.312509e-57	3.018016e-54
MsaG016767	MsaG028669	0.804216	4.052325e-49	6.033041e-47
MsaG018165	MsaG028669	0.841355	9.265087e-58	3.774494e-55
MsaG018254	MsaG028669	0.842312	5.192666e-58	2.181016e-55
MsaG018483	MsaG028669	0.800652	2.181289e-48	2.993020e-46
MsaG018500	MsaG028669	0.866937	3.979567e-65	4.065705e-62
MsaG018653	MsaG028669	0.875852	4.615539e-68	6.894484e-65
MsaG018689	MsaG028669	0.827408	2.838901e-54	7.635352e-52
MsaG019578	MsaG028669	0.908769	2.859559e-81	2.495118e-77
MsaG020532	MsaG028669	0.805455	2.239493e-49	3.431240e-47
MsaG020565	MsaG028669	0.921888	5.186132e-88	1.121279e-83
MsaG020952	MsaG028669	0.894299	6.296818e-75	2.335204e-71
MsaG021301	MsaG028669	0.855534	1.145189e-61	7.543193e-59
MsaG021314	MsaG028669	0.808437	5.277145e-50	8.678552e-48
MsaG021969	MsaG028669	0.802218	1.045611e-48	1.486515e-46
MsaG023325	MsaG028669	0.849862	4.683087e-60	2.526010e-57
MsaG023405	MsaG028669	0.851092	2.121711e-60	1.194029e-57
MsaG023741	MsaG028669	0.810333	2.076943e-50	3.575887e-48
MsaG023698	MsaG028669	0.823981	1.828753e-53	4.474057e-51
MsaG023764	MsaG028669	0.849803	4.864329e-60	2.618609e-57
MsaG023963	MsaG028669	0.923739	4.669254e-89	1.161720e-84
MsaG023939	MsaG028669	0.877534	1.215842e-68	1.958991e-65
MsaG024283	MsaG028669	0.846725	3.415913e-59	1.657481e-56
MsaG024484	MsaG028669	0.806504	1.350895e-49	2.121601e-47
MsaG024573	MsaG028669	0.808691	4.659563e-50	7.710323e-48
MsaG026598	MsaG028669	0.873109	3.899017e-67	5.161773e-64
MsaG026584	MsaG028669	0.840970	1.168829e-57	4.704013e-55
MsaG026763	MsaG028669	0.900800	1.176796e-77	6.313413e-74
MsaG026931	MsaG028669	0.801989	1.164438e-48	1.646863e-46
MsaG027149	MsaG028669	0.867082	3.577721e-65	3.676475e-62
MsaG027252	MsaG028669	0.960933	1.463882e-118	8.067868e-113
MsaG027423	MsaG028669	0.833706	8.298718e-56	2.674714e-53
MsaG027648	MsaG028669	0.893922	8.949309e-75	3.250769e-71
MsaG027858	MsaG028669	0.857085	4.038197e-62	2.814480e-59
MsaG027861	MsaG028669	0.831178	3.487056e-55	1.043803e-52
MsaG028149	MsaG028669	0.839888	2.235499e-57	8.696344e-55
MsaG028266	MsaG028669	0.826449	4.801011e-54	1.257249e-51
MsaG028669	MsaG028881	0.822845	3.360102e-53	7.971571e-51
MsaG028669	MsaG029058	0.815185	1.820872e-51	3.536434e-49
MsaG028669	MsaG029297	0.815013	1.987284e-51	3.842924e-49
MsaG028669	MsaG029673	0.804380	3.746945e-49	5.599543e-47
MsaG028669	MsaG029846	0.825878	6.553017e-54	1.688981e-51
MsaG028669	MsaG029852	0.808071	6.308646e-50	1.028415e-47
MsaG028669	MsaG030864	0.856026	8.239278e-62	5.524399e-59
MsaG028669	MsaG031195	0.896422	8.473642e-76	3.530871e-72
MsaG028669	MsaG031845	0.836638	1.523182e-56	5.359071e-54
MsaG028669	MsaG033403	0.811375	1.239245e-50	2.188524e-48
MsaG028669	MsaG033645	0.927330	3.658010e-91	1.204662e-86
MsaG028669	MsaG033805	0.804038	4.411351e-49	6.540651e-47
MsaG028669	MsaG033823	0.838634	4.708969e-57	1.761454e-54
MsaG028669	MsaG034327	0.870723	2.397518e-66	2.864014e-63
MsaG028669	MsaG034330	0.826092	5.832069e-54	1.512124e-51
MsaG028669	MsaG034570	0.836517	1.634230e-56	5.729022e-54
MsaG028669	MsaG034745	0.810536	1.879206e-50	3.251401e-48
MsaG028669	MsaG035534	0.829649	8.211127e-55	2.352669e-52
MsaG028669	MsaG035551	0.849926	4.496416e-60	2.430756e-57
MsaG028669	MsaG036055	0.846345	4.332766e-59	2.075763e-56
MsaG028669	MsaG036126	0.832480	1.670099e-55	5.192467e-53
MsaG028669	MsaG038751	0.885462	1.717270e-71	4.022828e-68
MsaG028669	MsaG039929	0.850236	3.683336e-60	2.012321e-57
MsaG028669	MsaG040676	0.877835	9.562503e-69	1.561973e-65
MsaG028669	MsaG040834	0.809258	3.529156e-50	5.919512e-48
MsaG028669	MsaG041532	0.810327	2.083513e-50	3.586573e-48
MsaG028669	MsaG041790	0.834439	5.447772e-56	1.794521e-53
MsaG028669	MsaG041791	0.874446	1.386524e-67	1.946422e-64
MsaG028669	MsaG041792	0.864147	2.984277e-64	2.725293e-61
MsaG028669	MsaG041863	0.829254	1.023155e-54	2.898250e-52
MsaG028669	MsaG042094	0.861750	1.627445e-63	1.352662e-60
MsaG028669	MsaG042711	0.803598	5.439614e-49	7.982898e-47
MsaG028669	MsaG043809	0.889478	5.128293e-73	1.470904e-69
MsaG028669	MsaG043810	0.894916	3.531083e-75	1.353777e-71
MsaG028669	MsaG044065	0.905184	1.323480e-79	9.222586e-76
MsaG028669	MsaG044658	0.829471	9.068199e-55	2.584921e-52
MsaG028669	MsaG045049	0.842316	5.179960e-58	2.175985e-55
MsaG028669	MsaG045270	0.851691	1.439134e-60	8.269227e-58
MsaG028669	MsaG045786	0.882155	2.809904e-70	5.609934e-67
MsaG028669	MsaG045989	0.865393	1.220035e-64	1.170868e-61
MsaG028669	MsaG046060	0.832444	1.704371e-55	5.293586e-53
MsaG028669	MsaG046330	0.883757	7.334344e-71	1.581792e-67
MsaG028669	MsaG046426	0.805765	1.928916e-49	2.976897e-47
MsaG028669	MsaG046502	0.858995	1.099811e-62	8.230802e-60
MsaG028669	MsaG046652	0.803441	5.859129e-49	8.567606e-47
MsaG028669	MsaG046735	0.862073	1.297184e-63	1.091767e-60
MsaG028669	MsaG046839	0.935627	1.789065e-96	1.159195e-91
MsaG028669	MsaG046852	0.846467	4.016314e-59	1.931798e-56
MsaG028669	MsaG046909	0.907652	9.602240e-81	7.805471e-77
MsaG028669	MsaG046910	0.954325	1.278025e-111	4.079739e-106
MsaG028669	MsaG047018	0.846519	3.886903e-59	1.872880e-56
MsaG028669	MsaG047022	0.858807	1.250652e-62	9.293945e-60
MsaG028669	MsaG047066	0.829859	7.302673e-55	2.105001e-52
MsaG028669	MsaG001526	0.816105	1.138571e-51	2.263424e-49
MsaG028669	MsaG002244	0.879515	2.465700e-69	4.352168e-66
MsaG028669	MsaG004323	0.808975	4.053790e-50	6.753717e-48
MsaG028669	MsaG003533	0.848168	1.377153e-59	7.013526e-57
MsaG028669	MsaG002661	0.834812	4.394271e-56	1.463698e-53
MsaG028669	MsaG006041	0.841529	8.342857e-58	3.417730e-55
MsaG028669	MsaG008439	0.820083	1.448971e-52	3.193881e-50
MsaG028669	MsaG007339	0.868007	1.814371e-65	1.935921e-62
MsaG028669	MsaG009038	0.818204	3.861144e-52	8.101711e-50
MsaG028669	MsaG011924	0.815498	1.552895e-51	3.039863e-49
MsaG028669	MsaG014196	0.807055	1.034114e-49	1.645280e-47
MsaG028669	MsaG013731	0.882468	2.164673e-70	4.386687e-67
MsaG028669	MsaG013042	0.803626	5.367042e-49	7.881478e-47
MsaG028669	MsaG019050	0.924566	1.562431e-89	4.142637e-85
MsaG028669	MsaG020453	0.827091	3.378128e-54	9.005461e-52
MsaG028669	MsaG018938	0.813753	3.762834e-51	7.049508e-49
MsaG028669	MsaG027609	0.845206	8.803341e-59	4.061011e-56
MsaG028669	MsaG027456	0.820836	9.751954e-53	2.192672e-50
MsaG028669	MsaG026953	0.813389	4.521143e-51	8.393257e-49
MsaG028669	MsaG026814	0.808262	5.749170e-50	9.415157e-48
MsaG028669	MsaG033429	0.848646	1.017465e-59	5.265753e-57
MsaG028669	MsaG034042	0.890759	1.625206e-73	4.983596e-70
MsaG028669	MsaG030637	0.823365	2.544680e-53	6.122747e-51
MsaG028669	MsaG034688	0.879227	3.113708e-69	5.423726e-66
MsaG028669	MsaG031967	0.877730	1.039894e-68	1.690448e-65
MsaG028669	MsaG032953	0.891870	5.928614e-74	1.928181e-70
MsaG028669	MsaG033067	0.837205	1.093076e-56	3.912444e-54
MsaG028669	MsaG035307	0.916579	3.768212e-85	5.548784e-81
MsaG028669	MsaG036522	0.811788	1.008354e-50	1.798942e-48
MsaG028669	MsaG036002	0.802264	1.023174e-48	1.456166e-46
MsaG028669	MsaG035492	0.832540	1.613361e-55	5.024937e-53
MsaG028669	MsaG039594	0.820037	1.484229e-52	3.267654e-50
MsaG028669	MsaG044083	0.804171	4.140605e-49	6.157888e-47
MsaG028669	MsaG045742	0.883005	1.381697e-70	2.874014e-67
MsaG028669	MsaG043095	0.883629	8.169457e-71	1.751111e-67

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028669	MtrunA17_Chr5g0429931	85.356	239	26	1	36	265	10	248	6.35e-152	423
MsaG028669	MtrunA17_Chr3g0077451	69.295	241	54	3	35	265	10	240	1.25e-113	326
MsaG028669	MtrunA17_Chr3g0077411	64.045	267	79	3	16	265	257	523	9.06e-113	334
MsaG028669	MtrunA17_Chr3g0077411	54.135	266	86	5	1	253	1	243	1.25e-84	262
MsaG028669	MtrunA17_Chr3g0077431	67.299	211	49	3	65	265	1	201	1.39e-94	276
MsaG028669	MtrunA17_Chr3g0077421	64.762	210	53	3	65	263	1	200	4.55e-89	263
MsaG028669	MtrunA17_Chr3g0077441	64.762	210	53	3	65	263	1	200	4.55e-89	263
MsaG028669	MtrunA17_Chr3g0077361	54.682	267	88	4	1	256	20	264	8.46e-88	270
MsaG028669	MtrunA17_Chr3g0077361	52.555	274	84	3	3	265	269	507	3.17e-85	263
MsaG028669	MtrunA17_Chr4g0009491	58.667	225	83	3	3	217	206	430	2.20e-82	253
MsaG028669	MtrunA17_Chr4g0009491	50.704	213	74	2	35	238	11	201	2.54e-61	199
MsaG028669	MtrunA17_Chr3g0077381	58.716	218	87	2	3	217	228	445	8.02e-81	250
MsaG028669	MtrunA17_Chr3g0077381	48.069	233	66	4	35	256	34	222	7.52e-58	191
MsaG028669	MtrunA17_Chr3g0077461	54.000	250	93	8	16	257	232	467	8.34e-78	243
MsaG028669	MtrunA17_Chr3g0077461	49.789	237	79	4	36	262	22	228	1.07e-67	216
MsaG028669	MtrunA17_Chr1g0162441	48.485	99	51	0	21	119	7	105	7.90e-30	116
MsaG028669	MtrunA17_Chr3g0103171	28.244	262	148	5	36	258	5	265	2.68e-26	103
MsaG028669	MtrunA17_Chr4g0033961	36.025	161	97	2	18	173	3	162	3.69e-26	105
MsaG028669	MtrunA17_Chr3g0103181	28.364	275	155	6	20	258	11	279	7.23e-25	100
MsaG028669	MtrunA17_Chr7g0233521	27.985	268	148	7	37	262	2	266	1.15e-24	99.8
MsaG028669	MtrunA17_Chr3g0131891	26.644	289	166	6	20	262	18	306	1.25e-24	100
MsaG028669	MtrunA17_Chr1g0162411	48.889	90	46	0	21	110	7	96	2.80e-24	100
MsaG028669	MtrunA17_Chr7g0233561	27.070	314	169	8	7	262	4	315	5.57e-23	95.9
MsaG028669	MtrunA17_Chr8g0390841	23.569	297	165	6	21	259	39	331	7.33e-21	91.7
MsaG028669	MtrunA17_Chr7g0233531	28.253	269	146	8	37	262	2	266	3.33e-20	87.4
MsaG028669	MtrunA17_Chr5g0419201	29.697	165	105	2	21	185	16	169	3.55e-20	85.5
MsaG028669	MtrunA17_Chr1g0163071	24.913	289	148	6	37	259	2	287	6.41e-20	87.0
MsaG028669	MtrunA17_Chr7g0233571	33.571	140	81	1	13	140	2	141	6.55e-20	85.5
MsaG028669	MtrunA17_Chr7g0233541	25.965	285	149	7	37	262	2	283	1.67e-19	85.9
MsaG028669	MtrunA17_Chr1g0154161	23.404	282	169	6	20	258	29	306	8.74e-19	84.3
MsaG028669	MtrunA17_Chr1g0208771	24.199	281	156	8	36	260	12	291	9.77e-19	85.1
MsaG028669	MtrunA17_Chr3g0103151	40.000	100	58	1	20	119	11	108	6.66e-18	78.6
MsaG028669	MtrunA17_Chr1g0162421	50.000	58	29	0	35	92	7	64	7.56e-18	75.5
MsaG028669	MtrunA17_Chr3g0103191	29.469	207	113	4	21	199	12	213	9.45e-18	80.1
MsaG028669	MtrunA17_Chr1g0163221	25.685	292	169	9	12	258	2	290	5.78e-17	79.3
MsaG028669	MtrunA17_Chr5g0421921	39.623	106	54	2	167	263	8	112	4.32e-16	72.4
MsaG028669	MtrunA17_Chr5g0421731	39.623	106	54	2	167	263	8	112	4.32e-16	72.4
MsaG028669	MtrunA17_Chr5g0421851	39.623	106	54	2	167	263	83	187	4.23e-15	71.6
MsaG028669	MtrunA17_Chr6g0467351	31.655	139	91	2	20	154	14	152	7.49e-15	72.0
MsaG028669	MtrunA17_Chr4g0067431	24.917	301	161	8	20	258	14	311	1.72e-14	72.0
MsaG028669	MtrunA17_Chr3g0103201	25.339	221	118	6	80	258	5	220	6.88e-13	66.2
MsaG028669	MtrunA17_Chr1g0154041	30.928	97	66	1	20	116	15	110	1.68e-12	67.0
MsaG028669	MtrunA17_Chr1g0163061	30.769	130	80	2	20	139	14	143	3.67e-12	65.1
MsaG028669	MtrunA17_Chr1g0163251	21.691	272	170	8	30	261	14	282	3.76e-12	65.9
MsaG028669	MtrunA17_Chr1g0154101	31.579	95	65	0	20	114	24	118	1.14e-11	64.7
MsaG028669	MtrunA17_Chr1g0154101	34.737	95	60	2	20	114	183	275	2.41e-11	63.5
MsaG028669	MtrunA17_Chr1g0154191	33.684	95	63	0	20	114	21	115	4.56e-11	62.4
MsaG028669	MtrunA17_Chr1g0154171	36.709	79	50	0	33	111	34	112	5.68e-11	62.0
MsaG028669	MtrunA17_Chr1g0154071	33.684	95	62	1	20	114	27	120	7.87e-11	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028669	AT3G18990.1	48.485	99	51	0	21	119	6	104	4.93e-26	104
MsaG028669	AT3G18990.2	48.485	99	51	0	21	119	6	104	7.93e-26	104
MsaG028669	AT4G01580.1	37.302	126	71	1	4	121	5	130	1.04e-19	84.7
MsaG028669	AT3G18960.2	38.835	103	63	0	19	121	28	130	3.64e-18	80.5
MsaG028669	AT3G18960.1	38.835	103	63	0	19	121	28	130	5.61e-18	80.5
MsaG028669	AT1G49475.1	37.037	135	75	2	4	129	8	141	1.30e-17	79.0
MsaG028669	AT3G18960.3	38.636	88	54	0	34	121	6	93	2.28e-13	67.0
MsaG028669	AT4G31690.1	25.000	236	156	7	19	248	12	232	2.22e-12	65.9
MsaG028669	AT4G31640.1	23.846	260	152	9	18	259	11	242	6.09e-11	62.4

Find 51 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTGCCCTCCATGAGAATTT+TGG	0.201758	5:+66822629	None:intergenic
AGTGAAGCTTACTATTTCTT+TGG	0.240401	5:+66824452	None:intergenic
GATGAATTTATATCAAGATT+TGG	0.269670	5:-66823213	MsaT028669.1:CDS
CAACGAAAATAAGGGTTGTT+TGG	0.270085	5:+66822811	None:intergenic
TACTATTTCTTTGGAATGAA+TGG	0.303913	5:+66824461	None:intergenic
AGATGGTCGTGTCTGGAAAA+TGG	0.306967	5:-66823154	MsaT028669.1:CDS
TTATAGGAACATTTGGCTTC+AGG	0.316899	5:+66822656	None:intergenic
ATGAATTTATATCAAGATTT+GGG	0.336114	5:-66823212	MsaT028669.1:CDS
CCTTCTCCGCCGCTGATGTC+TGG	0.353245	5:+66824520	None:intergenic
ATGAATGGGTGAGGGAAGTA+TGG	0.359095	5:+66824476	None:intergenic
TCCCTTCATATTTGAAAGAA+AGG	0.361097	5:+66823046	None:intergenic
ATTATCCTAGTTCTAGAAAA+AGG	0.363374	5:-66822930	MsaT028669.1:CDS
TGGAGCTTTATAGGAACATT+TGG	0.363518	5:+66822649	None:intergenic
AACGAAAATAAGGGTTGTTT+GGG	0.366185	5:+66822812	None:intergenic
GAATACTATTCTATAGGATA+TGG	0.373789	5:-66823075	MsaT028669.1:CDS
ATGTGAGAGGCGTGGGAAAA+AGG	0.385584	5:-66822893	MsaT028669.1:CDS
TTCCTTTCTTTCAAATATGA+AGG	0.389522	5:-66823048	MsaT028669.1:CDS
AATCTTGATATAAATTCATC+TGG	0.413169	5:+66823216	None:intergenic
CTGTTCCAGATGGTCGTGTC+TGG	0.416931	5:-66823161	MsaT028669.1:CDS
GTTGTTTGGGTTGAGTTCCT+TGG	0.432159	5:+66822825	None:intergenic
ACTATTTCTTTGGAATGAAT+GGG	0.437997	5:+66824462	None:intergenic
TTTGTAGAATACTATTCTAT+AGG	0.438154	5:-66823081	MsaT028669.1:CDS
GGAGGGCAGTGGGAAGTGTT+TGG	0.442028	5:-66822616	MsaT028669.1:CDS
TTCTTTGGAATGAATGGGTG+AGG	0.464859	5:+66824467	None:intergenic
CCTCTCACATGTTTCAACCT+TGG	0.481695	5:+66822906	None:intergenic
CCAGACATCAGCGGCGGAGA+AGG	0.489663	5:-66824520	MsaT028669.1:CDS
ATAAAGCTCCAAAATTCTCA+TGG	0.500218	5:-66822637	MsaT028669.1:CDS
AAAATTCTCATGGAGGGCAG+TGG	0.508854	5:-66822627	MsaT028669.1:CDS
TCCTTTCTTTCAAATATGAA+GGG	0.512330	5:-66823047	MsaT028669.1:CDS
TTGCAACAATGCAGCCTCGC+CGG	0.517685	5:-66824554	None:intergenic
TTCAAAACTTCAAGTACTAA+CGG	0.531313	5:-66822967	MsaT028669.1:CDS
TCTTTGGAATGAATGGGTGA+GGG	0.542125	5:+66824468	None:intergenic
TTGAAACATGTGAGAGGCGT+GGG	0.548958	5:-66822900	MsaT028669.1:CDS
TTTCGTTGCAAAATCGTCAA+GGG	0.551442	5:-66822796	MsaT028669.1:CDS
AGCTCCAAAATTCTCATGGA+GGG	0.568287	5:-66822633	MsaT028669.1:CDS
AAGAGTAGAGAATGCTGCCA+AGG	0.581714	5:-66822842	MsaT028669.1:CDS
AAATTCTCATGGAGGGCAGT+GGG	0.584828	5:-66822626	MsaT028669.1:CDS
ATCAGCAATGCAAATAGTGA+GGG	0.596191	5:-66822572	MsaT028669.1:CDS
GTTGAAACATGTGAGAGGCG+TGG	0.612877	5:-66822901	MsaT028669.1:CDS
GCTACAATTACTGTTCCAGA+TGG	0.621864	5:-66823171	MsaT028669.1:CDS
ATGTCTGGACACACTTTCGC+CGG	0.627588	5:+66824535	None:intergenic
CATCAGCAATGCAAATAGTG+AGG	0.629339	5:-66822573	MsaT028669.1:CDS
TGGACACACTTTCGCCGGCG+AGG	0.634315	5:+66824540	None:intergenic
AAGCTCCAAAATTCTCATGG+AGG	0.639241	5:-66822634	MsaT028669.1:CDS
GTGTGTTTGAGCTGATCAAG+AGG	0.642202	5:-66822501	MsaT028669.1:CDS
AGGGACAACAAACTGTCACA+TGG	0.650637	5:-66822532	MsaT028669.1:CDS
CCAAGGTTGAAACATGTGAG+AGG	0.654125	5:-66822906	MsaT028669.1:CDS
GTGTGTCCAGACATCAGCGG+CGG	0.681356	5:-66824526	MsaT028669.1:CDS
AATCGTCAAGGGAAAATATG+CGG	0.692781	5:-66822785	MsaT028669.1:intron
TCAGCAATGCAAATAGTGAG+GGG	0.699768	5:-66822571	MsaT028669.1:CDS
AAAGTGTGTCCAGACATCAG+CGG	0.761993	5:-66824529	MsaT028669.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	66822447	66824568	66822447	ID=MsaG028669
Chr5	mRNA	66822447	66824568	66822447	ID=MsaT028669.1;Parent=MsaG028669
Chr5	exon	66822447	66822680	66822447	ID=MsaT028669.1.exon3;Parent=MsaT028669.1
Chr5	CDS	66822447	66822680	66822447	ID=cds.MsaT028669.1;Parent=MsaT028669.1
Chr5	exon	66822786	66823244	66822786	ID=MsaT028669.1.exon2;Parent=MsaT028669.1
Chr5	CDS	66822786	66823244	66822786	ID=cds.MsaT028669.1;Parent=MsaT028669.1
Chr5	exon	66824464	66824568	66824464	ID=MsaT028669.1.exon1;Parent=MsaT028669.1
Chr5	CDS	66824464	66824568	66824464	ID=cds.MsaT028669.1;Parent=MsaT028669.1

Gene Sequence

>MsaT028669.1

ATGCAGCCTCGCCGGCGAAAGTGTGTCCAGACATCAGCGGCGGAGAAGGAATCAAAACATTTTATGAAAGCCATACTTCCCTCACCCATTCATTCCAAAGAAATAAGAATTCCAGATGAATTTATATCAAGATTTGGGAATGAACTCAAGAATGTTGCTACAATTACTGTTCCAGATGGTCGTGTCTGGAAAATGGAACTGAAGAAACATGATGAGAACGTTTTCTTTTGCAACAAATGGCAAGAGTTTGTAGAATACTATTCTATAGGATATGGTTGCTTCCTTTCTTTCAAATATGAAGGGAATTCAAAGTTTAGTGCTATTATATTTGATGCAACTTCTGTTGAAATTTGCTATCCTTTCAAAACTTCAAGTACTAACGGAGAACCAAAAACAAATTATCCTAGTTCTAGAAAAAGGTCCAAGGTTGAAACATGTGAGAGGCGTGGGAAAAAGGTCAAAAACATGTCTAAATATGCTTCTAAAAGAGTAGAGAATGCTGCCAAGGAACTCAACCCAAACAACCCTTATTTTCGTTGCAAAATCGTCAAGGGAAAATATGCGTACCTGAAGCCAAATGTTCCTATAAAGCTCCAAAATTCTCATGGAGGGCAGTGGGAAGTGTTTGGCATTATTCATGATGTCAGATCATCAGCAATGCAAATAGTGAGGGGATTTTCTATATTTCAAAGGGACAACAAACTGTCACATGGAGATTATTGTGTGTTTGAGCTGATCAAGAGGAGACCGATTGTGCTAAAAGTCACAATGTTTCGTGCAGTTGACTATTGCGATTAA

Protein sequence

>MsaT028669.1

MQPRRRKCVQTSAAEKESKHFMKAILPSPIHSKEIRIPDEFISRFGNELKNVATITVPDGRVWKMELKKHDENVFFCNKWQEFVEYYSIGYGCFLSFKYEGNSKFSAIIFDATSVEICYPFKTSSTNGEPKTNYPSSRKRSKVETCERRGKKVKNMSKYASKRVENAAKELNPNNPYFRCKIVKGKYAYLKPNVPIKLQNSHGGQWEVFGIIHDVRSSAMQIVRGFSIFQRDNKLSHGDYCVFELIKRRPIVLKVTMFRAVDYCD*