AlfalfaGEDB | MsaG028669

M. sativa ssp. caerulea / MsaG028669

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028669	XP_039690713.1	85.036	274	32	1	1	265	1	274	1.49e-171	484

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028669	sp\|Q8L3W1\|VRN1_ARATH	48.485	99	51	0	21	119	6	104	4.85e-25	104

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028669	tr\|G7KE59\|G7KE59_MEDTR	85.036	274	32	1	1	265	1	274	7.14e-172	484

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG028669	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000213	MsaG028669	0.817670	5.090649e-52	1.053488e-49
MsaG000491	MsaG028669	0.882846	1.577892e-70	3.257063e-67
MsaG000671	MsaG028669	0.857190	3.761993e-62	2.632005e-59
MsaG000730	MsaG028669	0.852045	1.143357e-60	6.652846e-58
MsaG000733	MsaG028669	0.847831	1.704377e-59	8.582945e-57
MsaG000858	MsaG028669	0.812514	7.016158e-51	1.274396e-48
MsaG002560	MsaG028669	0.822345	4.384847e-53	1.026365e-50
MsaG002563	MsaG028669	0.821161	8.214591e-53	1.863140e-50
MsaG003090	MsaG028669	0.847345	2.314386e-59	1.146516e-56
MsaG003269	MsaG028669	0.853379	4.777864e-61	2.913378e-58

Showing 1 to 10 of 196 entries

Previous1 2 3 4 5…20Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028669	MtrunA17_Chr5g0429931	85.356	239	26	1	36	265	10	248	6.35e-152	423
MsaG028669	MtrunA17_Chr3g0077451	69.295	241	54	3	35	265	10	240	1.25e-113	326
MsaG028669	MtrunA17_Chr3g0077411	64.045	267	79	3	16	265	257	523	9.06e-113	334
MsaG028669	MtrunA17_Chr3g0077411	54.135	266	86	5	1	253	1	243	1.25e-84	262
MsaG028669	MtrunA17_Chr3g0077431	67.299	211	49	3	65	265	1	201	1.39e-94	276
MsaG028669	MtrunA17_Chr3g0077421	64.762	210	53	3	65	263	1	200	4.55e-89	263
MsaG028669	MtrunA17_Chr3g0077441	64.762	210	53	3	65	263	1	200	4.55e-89	263
MsaG028669	MtrunA17_Chr3g0077361	54.682	267	88	4	1	256	20	264	8.46e-88	270
MsaG028669	MtrunA17_Chr3g0077361	52.555	274	84	3	3	265	269	507	3.17e-85	263
MsaG028669	MtrunA17_Chr4g0009491	58.667	225	83	3	3	217	206	430	2.20e-82	253

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028669	AT3G18990.1	48.485	99	51	0	21	119	6	104	4.93e-26	104
MsaG028669	AT3G18990.2	48.485	99	51	0	21	119	6	104	7.93e-26	104
MsaG028669	AT4G01580.1	37.302	126	71	1	4	121	5	130	1.04e-19	84.7
MsaG028669	AT3G18960.2	38.835	103	63	0	19	121	28	130	3.64e-18	80.5
MsaG028669	AT3G18960.1	38.835	103	63	0	19	121	28	130	5.61e-18	80.5
MsaG028669	AT1G49475.1	37.037	135	75	2	4	129	8	141	1.30e-17	79.0
MsaG028669	AT3G18960.3	38.636	88	54	0	34	121	6	93	2.28e-13	67.0
MsaG028669	AT4G31690.1	25.000	236	156	7	19	248	12	232	2.22e-12	65.9
MsaG028669	AT4G31640.1	23.846	260	152	9	18	259	11	242	6.09e-11	62.4

Showing 1 to 9 of 9 entries

Previous1Next

Find 51 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTCATGGAGGGCAG+TGG	0.508854	5:-66822627	MsaT028669.1:CDS
AAAGTGTGTCCAGACATCAG+CGG	0.761993	5:-66824529	MsaT028669.1:CDS
AAATTCTCATGGAGGGCAGT+GGG	0.584828	5:-66822626	MsaT028669.1:CDS
AACGAAAATAAGGGTTGTTT+GGG	0.366185	5:+66822812	None:intergenic
AAGAGTAGAGAATGCTGCCA+AGG	0.581714	5:-66822842	MsaT028669.1:CDS
AAGCTCCAAAATTCTCATGG+AGG	0.639241	5:-66822634	MsaT028669.1:CDS
AATCGTCAAGGGAAAATATG+CGG	0.692781	5:-66822785	MsaT028669.1:intron
AATCTTGATATAAATTCATC+TGG	0.413169	5:+66823216	None:intergenic
ACTATTTCTTTGGAATGAAT+GGG	0.437997	5:+66824462	None:intergenic
ACTGCCCTCCATGAGAATTT+TGG	0.201758	5:+66822629	None:intergenic

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	66822447	66824568	66822447	ID=MsaG028669
Chr5	mRNA	66822447	66824568	66822447	ID=MsaT028669.1;Parent=MsaG028669
Chr5	exon	66822447	66822680	66822447	ID=MsaT028669.1.exon3;Parent=MsaT028669.1
Chr5	CDS	66822447	66822680	66822447	ID=cds.MsaT028669.1;Parent=MsaT028669.1
Chr5	exon	66822786	66823244	66822786	ID=MsaT028669.1.exon2;Parent=MsaT028669.1
Chr5	CDS	66822786	66823244	66822786	ID=cds.MsaT028669.1;Parent=MsaT028669.1
Chr5	exon	66824464	66824568	66824464	ID=MsaT028669.1.exon1;Parent=MsaT028669.1
Chr5	CDS	66824464	66824568	66824464	ID=cds.MsaT028669.1;Parent=MsaT028669.1

Gene Sequence

>MsaT028669.1

ATGCAGCCTCGCCGGCGAAAGTGTGTCCAGACATCAGCGGCGGAGAAGGAATCAAAACATTTTATGAAAGCCATACTTCCCTCACCCATTCATTCCAAAGAAATAAGAATTCCAGATGAATTTATATCAAGATTTGGGAATGAACTCAAGAATGTTGCTACAATTACTGTTCCAGATGGTCGTGTCTGGAAAATGGAACTGAAGAAACATGATGAGAACGTTTTCTTTTGCAACAAATGGCAAGAGTTTGTAGAATACTATTCTATAGGATATGGTTGCTTCCTTTCTTTCAAATATGAAGGGAATTCAAAGTTTAGTGCTATTATATTTGATGCAACTTCTGTTGAAATTTGCTATCCTTTCAAAACTTCAAGTACTAACGGAGAACCAAAAACAAATTATCCTAGTTCTAGAAAAAGGTCCAAGGTTGAAACATGTGAGAGGCGTGGGAAAAAGGTCAAAAACATGTCTAAATATGCTTCTAAAAGAGTAGAGAATGCTGCCAAGGAACTCAACCCAAACAACCCTTATTTTCGTTGCAAAATCGTCAAGGGAAAATATGCGTACCTGAAGCCAAATGTTCCTATAAAGCTCCAAAATTCTCATGGAGGGCAGTGGGAAGTGTTTGGCATTATTCATGATGTCAGATCATCAGCAATGCAAATAGTGAGGGGATTTTCTATATTTCAAAGGGACAACAAACTGTCACATGGAGATTATTGTGTGTTTGAGCTGATCAAGAGGAGACCGATTGTGCTAAAAGTCACAATGTTTCGTGCAGTTGACTATTGCGATTAA

Protein sequence

>MsaT028669.1

MQPRRRKCVQTSAAEKESKHFMKAILPSPIHSKEIRIPDEFISRFGNELKNVATITVPDGRVWKMELKKHDENVFFCNKWQEFVEYYSIGYGCFLSFKYEGNSKFSAIIFDATSVEICYPFKTSSTNGEPKTNYPSSRKRSKVETCERRGKKVKNMSKYASKRVENAAKELNPNNPYFRCKIVKGKYAYLKPNVPIKLQNSHGGQWEVFGIIHDVRSSAMQIVRGFSIFQRDNKLSHGDYCVFELIKRRPIVLKVTMFRAVDYCD*