AlfalfaGEDB | MsaG028807

M. sativa ssp. caerulea / MsaG028807

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF12796.10

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028807	XP_003616654.2	97.657	683	16	0	1	683	1	683	0.0	1385

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028807	sp\|Q9XEE6\|C3H29_ARATH	50.789	697	228	21	1	683	1	596	0.0	596

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028807	tr\|G7K252\|G7K252_MEDTR	97.657	683	16	0	1	683	1	683	0.0	1385

TFs/TRs:

Gene ID	Type	Classification
MsaG028807	TF	C3H

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG002146	MsaG028807	0.807160	9.830285e-50	1.567889e-47
MsaG002291	MsaG028807	0.811477	1.177751e-50	2.085188e-48
MsaG003332	MsaG028807	0.808240	5.811463e-50	9.512107e-48
MsaG005847	MsaG028807	0.810433	1.977109e-50	3.412282e-48
MsaG006759	MsaG028807	0.814988	2.013344e-51	3.890819e-49
MsaG010331	MsaG028807	0.806749	1.199804e-49	1.895224e-47
MsaG011413	MsaG028807	0.802991	7.256084e-49	1.050058e-46
MsaG013182	MsaG028807	0.835535	2.893880e-56	9.850077e-54
MsaG015447	MsaG028807	0.821688	6.216830e-53	1.429794e-50
MsaG017895	MsaG028807	0.817762	4.852974e-52	1.006736e-49
MsaG018355	MsaG028807	0.817197	6.499058e-52	1.328762e-49
MsaG020708	MsaG028807	0.820075	1.454766e-52	3.206059e-50
MsaG021783	MsaG028807	0.809780	2.728884e-50	4.635616e-48
MsaG022609	MsaG028807	0.823150	2.854723e-53	6.828529e-51
MsaG022981	MsaG028807	0.806410	1.413442e-49	2.214945e-47
MsaG024535	MsaG028807	0.804320	3.857188e-49	5.756299e-47
MsaG028743	MsaG028807	0.812892	5.805583e-51	1.064433e-48
MsaG028807	MsaG031414	0.817244	6.341342e-52	1.298113e-49
MsaG028807	MsaG037276	0.825445	8.294101e-54	2.112031e-51
MsaG028807	MsaG037332	0.805448	2.247270e-49	3.442592e-47
MsaG028807	MsaG037333	0.806330	1.469415e-49	2.298262e-47
MsaG028807	MsaG038166	0.805687	2.002600e-49	3.085038e-47
MsaG028807	MsaG040019	0.810469	1.942061e-50	3.354768e-48
MsaG028807	MsaG040266	0.804816	3.041800e-49	4.592010e-47
MsaG028807	MsaG042799	0.807493	8.360878e-50	1.344152e-47
MsaG028807	MsaG044178	0.814497	2.583459e-51	4.931017e-49
MsaG028807	MsaG044946	0.805188	2.546051e-49	3.876887e-47
MsaG028807	MsaG045295	0.809458	3.197989e-50	5.390496e-48
MsaG028807	MsaG045348	0.823252	2.703719e-53	6.485364e-51
MsaG028807	MsaG013588	0.815350	1.674490e-51	3.265756e-49
MsaG028807	MsaG019768	0.807328	9.060934e-50	1.450953e-47
MsaG028807	MsaG024064	0.807805	7.182144e-50	1.163355e-47
MsaG028807	MsaG027624	0.806390	1.426998e-49	2.235132e-47
MsaG028807	MsaG029559	0.816626	8.718073e-52	1.756317e-49
MsaG028807	MsaG044301	0.839836	2.305850e-57	8.955410e-55

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028807	MtrunA17_Chr5g0437251	97.657	683	16	0	1	683	1	683	0.0	1385
MsaG028807	MtrunA17_Chr5g0430211	48.476	722	313	14	1	682	1	703	0.0	640
MsaG028807	MtrunA17_Chr1g0187591	44.589	693	288	17	1	643	1	647	2.39e-175	515
MsaG028807	MtrunA17_Chr7g0257831	42.759	725	304	21	30	683	47	731	8.14e-167	496
MsaG028807	MtrunA17_Chr3g0113651	62.250	400	86	7	16	414	1	336	4.47e-165	484
MsaG028807	MtrunA17_Chr3g0113651	51.867	241	88	9	439	674	298	515	2.74e-54	194
MsaG028807	MtrunA17_Chr3g0088521	40.220	726	319	22	28	678	43	728	6.91e-145	439
MsaG028807	MtrunA17_Chr3g0105131	41.089	606	221	17	25	624	27	502	3.61e-123	376
MsaG028807	MtrunA17_Chr3g0105101	43.711	485	173	11	20	501	14	401	3.28e-116	354
MsaG028807	MtrunA17_Chr1g0171151	37.595	524	256	14	30	509	31	527	2.39e-102	325
MsaG028807	MtrunA17_Chr3g0092171	41.371	423	196	9	1	396	52	449	2.19e-92	296
MsaG028807	MtrunA17_Chr3g0092221	45.704	291	120	6	133	398	51	328	1.91e-73	243
MsaG028807	MtrunA17_Chr3g0105141	68.217	129	40	1	196	323	15	143	4.22e-61	201
MsaG028807	MtrunA17_Chr3g0105121	36.066	427	191	15	216	638	8	356	5.83e-59	202
MsaG028807	MtrunA17_Chr8g0389561	48.826	213	100	4	213	420	77	285	1.31e-54	191
MsaG028807	MtrunA17_Chr6g0487481	68.519	108	34	0	212	319	98	205	1.71e-51	183
MsaG028807	MtrunA17_Chr3g0135351	52.795	161	61	3	207	366	43	189	5.01e-49	173
MsaG028807	MtrunA17_Chr2g0324781	64.865	111	37	1	217	325	77	187	6.84e-48	174
MsaG028807	MtrunA17_Chr4g0040391	60.748	107	42	0	213	319	56	162	5.65e-46	166
MsaG028807	MtrunA17_Chr3g0105151	31.655	278	113	10	379	640	1	217	4.07e-24	101

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028807	AT2G40140.2	50.789	697	228	21	1	683	1	596	0.0	596
MsaG028807	AT2G40140.1	50.789	697	228	21	1	683	1	596	0.0	596
MsaG028807	AT5G58620.1	49.183	673	248	16	28	683	12	607	0.0	584
MsaG028807	AT3G55980.1	49.638	691	229	17	1	683	1	580	0.0	573
MsaG028807	AT3G55980.2	59.952	417	149	6	1	413	68	470	8.66e-166	491
MsaG028807	AT3G55980.2	45.745	188	66	7	498	683	494	647	1.38e-27	119
MsaG028807	AT2G41900.1	40.112	713	321	18	30	683	48	713	1.41e-142	433
MsaG028807	AT5G12850.1	40.470	724	307	25	25	678	37	706	9.76e-142	431
MsaG028807	AT5G07500.1	62.698	126	47	0	194	319	29	154	3.48e-55	189
MsaG028807	AT4G29190.1	46.256	227	110	4	195	420	58	273	1.48e-54	191
MsaG028807	AT2G25900.2	68.224	107	34	0	213	319	86	192	3.76e-51	180
MsaG028807	AT2G25900.1	68.224	107	34	0	213	319	86	192	3.76e-51	180
MsaG028807	AT2G19810.1	63.559	118	43	0	202	319	63	180	1.20e-50	180
MsaG028807	AT1G03790.1	55.263	152	54	3	213	360	78	219	9.43e-49	176
MsaG028807	AT5G44260.1	62.963	108	39	1	213	319	56	163	3.52e-44	163

Find 202 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGCGAAGGTGGTTCATGTTT+TGG	0.196801	5:-68959866	None:intergenic
CTGAGGAAATCCGCTTCTTT+TGG	0.197101	5:+68960170	MsaT028807.1:CDS
CTGCCACATGTTTCCACTCT+TGG	0.215837	5:-68959478	None:intergenic
CTTATGATTGCTTCCTTGTT+TGG	0.250098	5:+68958586	MsaT028807.1:CDS
ACTCGCAAGAATCTCCTTTC+TGG	0.258493	5:-68959170	None:intergenic
CGATTTGGACAACGAATTAA+AGG	0.268967	5:-68958818	None:intergenic
TGTAGTTGAGATAGTAAATT+AGG	0.275386	5:-68959759	None:intergenic
GACATAAACAACGGTGTATA+TGG	0.284178	5:+68958976	MsaT028807.1:CDS
ATCTGTTGTGTGGGTGTTGA+TGG	0.295601	5:-68959798	None:intergenic
GTCGTCCGGCCTTTCAGATT+GGG	0.298046	5:+68960094	MsaT028807.1:CDS
TACACAGGGCGCAGCTCTTC+GGG	0.300339	5:-68959300	None:intergenic
TGTCGTCCGGCCTTTCAGAT+TGG	0.305721	5:+68960093	MsaT028807.1:CDS
TCAGATTGGGGTTCCCCTAC+TGG	0.306620	5:+68960107	MsaT028807.1:CDS
GCTCTTCATTGTGCTGTTGC+TGG	0.308167	5:+68958688	MsaT028807.1:CDS
CGGAGTTTGTGGTTCCGATA+TGG	0.322011	5:+68958660	MsaT028807.1:CDS
CAACACCTTCCTACGCGATT+TGG	0.323846	5:-68958833	None:intergenic
TTGGGTTAATTCATTGGTTA+AGG	0.328824	5:+68960253	MsaT028807.1:CDS
TGCCACATGTTTCCACTCTT+GGG	0.340074	5:-68959477	None:intergenic
CAGCTGCAGTGATGAATTCT+AGG	0.343853	5:+68959970	MsaT028807.1:CDS
TGTCTCTTGGGTTAATTCAT+TGG	0.351526	5:+68960247	MsaT028807.1:CDS
TCTGAGAATTCCGGTGTATA+TGG	0.353483	5:+68960284	MsaT028807.1:CDS
CCCTACTGGGAAAGTCGATT+GGG	0.354575	5:+68960121	MsaT028807.1:CDS
TTTGGCCCATGTTCATGTTT+TGG	0.358068	5:-68959848	None:intergenic
CGCCTTCCAACCCTTCCTGC+AGG	0.359580	5:+68960069	MsaT028807.1:CDS
ATACACAGGGCGCAGCTCTT+CGG	0.370872	5:-68959301	None:intergenic
TATATGGATCAGATGAGTTT+AGG	0.370932	5:+68958992	MsaT028807.1:CDS
AGAAGTAGATGAGAAGGGTT+TGG	0.379368	5:+68958489	MsaT028807.1:CDS
GACATCAGGCTCAGCATGTT+GGG	0.385432	5:-68960228	None:intergenic
ATGGAGGATAAGGTTGAAAA+AGG	0.392683	5:+68958403	MsaT028807.1:CDS
CTCCTCCTTGCATTCTCACC+TGG	0.394967	5:-68959087	None:intergenic
ATGCTGAGCCTGATGTCTCT+TGG	0.404935	5:+68960234	MsaT028807.1:CDS
CAAGACCCTTTGCGAAACTC+TGG	0.410056	5:-68959147	None:intergenic
TTCTGTTGAATTCGCTGTTA+CGG	0.410177	5:-68959686	None:intergenic
GTCAATTCCACTAGCTGAAT+AGG	0.414997	5:-68959358	None:intergenic
GAGGAAGGCATATTGTTTGA+TGG	0.415999	5:-68959897	None:intergenic
CGCAAAGGGTCTTGCCAGAA+AGG	0.418356	5:+68959156	MsaT028807.1:CDS
GTCAAGCTCTTGCTTGATGC+CGG	0.418825	5:+68958736	MsaT028807.1:CDS
TATGGTGAGGGCTTCCTCAC+TGG	0.419808	5:-68959921	None:intergenic
TATACACCGTTGTTTATGTC+TGG	0.420621	5:-68958973	None:intergenic
CGTCCTTGCAAAGCCTTGTT+CGG	0.424614	5:-68959236	None:intergenic
ATTGATGTCAACGGAGTTTG+TGG	0.428144	5:+68958649	MsaT028807.1:CDS
TCTGGCAACGATATATCAAT+AGG	0.428410	5:-68958955	None:intergenic
GTCGAGTATATTCTTTCGAC+AGG	0.429694	5:+68958622	MsaT028807.1:CDS
CTGCAGCTGCCGCATATTCT+CGG	0.430426	5:-68960309	None:intergenic
AAGAGGTCATCAAGGTTAGT+TGG	0.431942	5:-68959723	None:intergenic
GTGAGGAAGCCCTCACCATA+TGG	0.432783	5:+68959924	MsaT028807.1:CDS
GCACTCTTCAAACGGCTACC+TGG	0.432870	5:-68959537	None:intergenic
CGCCCTGTGTATGCCTCCAC+TGG	0.433195	5:+68959312	MsaT028807.1:CDS
CAGCTGTAAGGATATTTCCT+TGG	0.434531	5:-68959114	None:intergenic
CCACTAGCTGAATAGGACTT+TGG	0.443786	5:-68959351	None:intergenic
CCCCTACTGGGAAAGTCGAT+TGG	0.445271	5:+68960120	MsaT028807.1:CDS
GATGTTCCATCTGAGAATTC+CGG	0.446112	5:+68960275	MsaT028807.1:CDS
AATTCGCTGTTACGGAAAGA+TGG	0.453909	5:-68959678	None:intergenic
TGGGATGCAGTTGGTGCAGC+TGG	0.454002	5:-68960209	None:intergenic
AGATTGTGCCATGGAGGATA+AGG	0.455927	5:+68958393	MsaT028807.1:CDS
GTTTAGGATGTACAGTTTCA+AGG	0.458638	5:+68959008	MsaT028807.1:CDS
ATGTGAATGAAGAAGGCTTT+TGG	0.459210	5:+68958512	MsaT028807.1:CDS
TGCTGAGCCTGATGTCTCTT+GGG	0.461989	5:+68960235	MsaT028807.1:CDS
CCCTTTGCGAAACTCTGGGC+AGG	0.465980	5:-68959142	None:intergenic
CACTCAAAGCACTCTTCAAA+CGG	0.468740	5:-68959545	None:intergenic
TGAGATGGAATTGCTCGGTC+TGG	0.469920	5:+68959584	MsaT028807.1:CDS
CAGATTGGGGTTCCCCTACT+GGG	0.471882	5:+68960108	MsaT028807.1:CDS
GGCTTCCTCACTGGAGAGGA+AGG	0.472160	5:-68959912	None:intergenic
CTACCTGGGAGCTGCAACGA+TGG	0.472506	5:-68959522	None:intergenic
CAAGAGAGAAGTAGATGAGA+AGG	0.474046	5:+68958483	MsaT028807.1:CDS
AGCTGTAAGGATATTTCCTT+GGG	0.474129	5:-68959113	None:intergenic
TGGCGCATCTGCATTGCACT+TGG	0.475619	5:-68959828	None:intergenic
TTCTCACCTGGATGAACAAA+GGG	0.476487	5:-68959075	None:intergenic
AAGAGAGAAGTAGATGAGAA+GGG	0.478152	5:+68958484	MsaT028807.1:CDS
AACAAGGAAGCAATCATAAG+AGG	0.482396	5:-68958583	None:intergenic
GCTGGCGCAATCAGATCAAC+CGG	0.486158	5:-68958796	None:intergenic
CACTCTTCAAACGGCTACCT+GGG	0.486258	5:-68959536	None:intergenic
CACCACGGTCAATGAAACTT+TGG	0.491260	5:-68960019	None:intergenic
GGTGCTGCAACTCACCATCT+TGG	0.497686	5:+68960038	MsaT028807.1:CDS
GGTTTGGATGTGAATGAAGA+AGG	0.500120	5:+68958505	MsaT028807.1:CDS
CCTTCCTGCAGGGTGTCGTC+CGG	0.501860	5:+68960080	MsaT028807.1:CDS
AACACCACCCATGTCTCCCT+TGG	0.506352	5:+68959440	MsaT028807.1:CDS
ATGAAGAGCAGTGGCCATAT+CGG	0.506470	5:-68958674	None:intergenic
CCCAATCGACTTTCCCAGTA+GGG	0.506612	5:-68960121	None:intergenic
TGTGGGTGTTGATGGTTGCA+TGG	0.506859	5:-68959790	None:intergenic
AGGCTTTGCAAGGACGAGAC+TGG	0.506964	5:+68959243	MsaT028807.1:CDS
AAAGTCGATTGGGGTGTAAA+CGG	0.507558	5:+68960131	MsaT028807.1:CDS
CACTCTAGTGCTTCCAAACA+AGG	0.508719	5:-68958599	None:intergenic
TGAAGAGTGCTTTGAGTGCA+AGG	0.510749	5:+68959550	MsaT028807.1:CDS
TTGGCTGCGCTGCTTTGCAA+AGG	0.511458	5:-68960000	None:intergenic
CTTCATTGTGCTGTTGCTGG+TGG	0.512690	5:+68958691	MsaT028807.1:CDS
TCGTCCGGCCTTTCAGATTG+GGG	0.513214	5:+68960095	MsaT028807.1:CDS
AGCCTTGTTCGGTATTGTGC+GGG	0.515045	5:-68959225	None:intergenic
GCCTTCCAACCCTTCCTGCA+GGG	0.517193	5:+68960070	MsaT028807.1:CDS
CCACCCATGTCTCCCTTGGC+AGG	0.517296	5:+68959444	MsaT028807.1:CDS
AGACATCAGGCTCAGCATGT+TGG	0.517932	5:-68960229	None:intergenic
TTGTACATCTGCTCCACCCA+TGG	0.518688	5:-68960362	None:intergenic
GGGCAGGGAACACAGCTGTA+AGG	0.520413	5:-68959126	None:intergenic
AATTTACTATCTCAACTACA+TGG	0.520900	5:+68959762	MsaT028807.1:CDS
TCGAGACGTGCTTCCACCAT+GGG	0.522786	5:+68960346	MsaT028807.1:CDS
TTCATCCAGGTGAGAATGCA+AGG	0.523324	5:+68959082	MsaT028807.1:CDS
ATTCGCTGTTACGGAAAGAT+GGG	0.523731	5:-68959677	None:intergenic
AAGAATTGGATCGAAGAAGA+TGG	0.527469	5:+68958543	MsaT028807.1:CDS
CGACACCCTGCAGGAAGGGT+TGG	0.530365	5:-68960075	None:intergenic
GTACAAAGAGCAGGAGCAGA+TGG	0.534247	5:+68960379	MsaT028807.1:CDS
CCACCATCGTTGCAGCTCCC+AGG	0.534409	5:+68959519	MsaT028807.1:CDS
CCCTGCCCAGAGTTTCGCAA+AGG	0.536018	5:+68959141	MsaT028807.1:CDS
GAATTAACCCAAGAGACATC+AGG	0.537150	5:-68960242	None:intergenic
GGAGCAGATGTACAAAGAGC+AGG	0.537466	5:+68960370	MsaT028807.1:CDS
CGGACGACACCCTGCAGGAA+GGG	0.538863	5:-68960079	None:intergenic
CCAAAGTCCTATTCAGCTAG+TGG	0.541639	5:+68959351	MsaT028807.1:CDS
TCAAGGTGAAGCCATGCTCA+AGG	0.542484	5:+68959025	MsaT028807.1:CDS
CCTGCCCAGAGTTTCGCAAA+GGG	0.543026	5:+68959142	MsaT028807.1:CDS
GAGTGTCCCTTTGTTCATCC+AGG	0.543113	5:+68959069	MsaT028807.1:CDS
TGATGCTAGTGAAAACAAAC+CGG	0.547920	5:+68958777	MsaT028807.1:CDS
ATTTCTGAACCCAAAAGAAG+CGG	0.548536	5:-68960180	None:intergenic
GTTGTCCAAATCGCGTAGGA+AGG	0.549554	5:+68958828	MsaT028807.1:CDS
GGGAGATGATGAACCTGCCA+AGG	0.553827	5:-68959457	None:intergenic
ACCCTGCAGGAAGGGTTGGA+AGG	0.554901	5:-68960071	None:intergenic
TGGAGAATGCATCTGTTGTG+TGG	0.555021	5:-68959808	None:intergenic
AGAAGATGGAATCCGAAAAG+AGG	0.556434	5:+68958557	MsaT028807.1:CDS
TTGGACAACGAATTAAAGGC+TGG	0.557548	5:-68958814	None:intergenic
GCTGATGAATCAAATCCATA+TGG	0.562833	5:-68959939	None:intergenic
AAGCCTTGTTCGGTATTGTG+CGG	0.563056	5:-68959226	None:intergenic
TTCTTCATCAGATTGTGCCA+TGG	0.564446	5:+68958384	MsaT028807.1:CDS
AAGACCCTTTGCGAAACTCT+GGG	0.564593	5:-68959146	None:intergenic
GAACCAGTGGAGGCATACAC+AGG	0.565086	5:-68959315	None:intergenic
CATCACTGCAGCTGCTACTG+CGG	0.565349	5:-68959961	None:intergenic
GGAACCCCAATCTGAAAGGC+CGG	0.568449	5:-68960099	None:intergenic
AAGGCCGGACGACACCCTGC+AGG	0.568796	5:-68960084	None:intergenic
GATCTTGAGATGGAATTGCT+CGG	0.572830	5:+68959579	MsaT028807.1:CDS
CCTGGGAGCTGCAACGATGG+TGG	0.572925	5:-68959519	None:intergenic
GATGCGCCAAAACATGAACA+TGG	0.573046	5:+68959842	MsaT028807.1:CDS
AGACGTGCTTCCACCATGGG+TGG	0.573955	5:+68960349	MsaT028807.1:CDS
CTTGTTTGGAAGCACTAGAG+TGG	0.576155	5:+68958600	MsaT028807.1:CDS
TGAACCTGCCAAGGGAGACA+TGG	0.576779	5:-68959448	None:intergenic
AGACAATTCAAGCAAGATTG+AGG	0.577524	5:-68958437	None:intergenic
ATCCCGCACAATACCGAACA+AGG	0.579739	5:+68959223	MsaT028807.1:CDS
AAGACAATCAGCATCTGCAC+CGG	0.580324	5:-68958755	None:intergenic
CAAGGGCTTACTCTCACGAT+TGG	0.580426	5:+68959043	MsaT028807.1:CDS
GTCGAGACGTGCTTCCACCA+TGG	0.580527	5:+68960345	MsaT028807.1:CDS
ATGGATAACTTGCGCGAAGG+TGG	0.584205	5:-68959878	None:intergenic
AAGGAGCGTCCATCTCCCCT+TGG	0.584326	5:-68958894	None:intergenic
TGAACTCATCCAAGGGGAGA+TGG	0.584869	5:+68958885	MsaT028807.1:CDS
CAAATCGCGTAGGAAGGTGT+TGG	0.585250	5:+68958834	MsaT028807.1:CDS
CCGGACGACACCCTGCAGGA+AGG	0.586791	5:-68960080	None:intergenic
GGAGAATGCATCTGTTGTGT+GGG	0.590736	5:-68959807	None:intergenic
GAAGAGTGCTTTGAGTGCAA+GGG	0.591839	5:+68959551	MsaT028807.1:CDS
CAAGGTGAAGCCATGCTCAA+GGG	0.594043	5:+68959026	MsaT028807.1:CDS
ATTTACTATCTCAACTACAT+GGG	0.597158	5:+68959763	MsaT028807.1:CDS
ATACCGAACAAGGCTTTGCA+AGG	0.600596	5:+68959233	MsaT028807.1:CDS
TAGGATCAGCTGATGCTAAG+AGG	0.602013	5:-68959740	None:intergenic
TGCTGCTGCTGTTGACGACG+AGG	0.602651	5:-68959612	None:intergenic
TAGGGGAACCCCAATCTGAA+AGG	0.605691	5:-68960103	None:intergenic
GAATCAAATCCATATGGTGA+GGG	0.607337	5:-68959933	None:intergenic
AGGATTTGGATTATGTGCAG+TGG	0.608930	5:+68958346	None:intergenic
GTAAGTGCTGAACTCATCCA+AGG	0.609847	5:+68958877	MsaT028807.1:CDS
TGAGAGTAAGCCCTTGAGCA+TGG	0.609898	5:-68959036	None:intergenic
ATTCTCACCTGGATGAACAA+AGG	0.616516	5:-68959076	None:intergenic
TGGATGAACAAAGGGACACT+CGG	0.617153	5:-68959067	None:intergenic
GGTTCATCATCTCCCAAGAG+TGG	0.617657	5:+68959465	MsaT028807.1:CDS
CTGCAGGAAGGGTTGGAAGG+CGG	0.621056	5:-68960068	None:intergenic
ATTCGTTGTCCAAATCGCGT+AGG	0.621353	5:+68958824	MsaT028807.1:CDS
TCAGCATGTTGGGATGCAGT+TGG	0.624317	5:-68960218	None:intergenic
CTGATGCTAAGAGGTCATCA+AGG	0.625709	5:-68959731	None:intergenic
TGAATCAAATCCATATGGTG+AGG	0.627563	5:-68959934	None:intergenic
TTCATCAGATTGTGCCATGG+AGG	0.627741	5:+68958387	MsaT028807.1:CDS
AGTTGACATCGGCAAAGATG+AGG	0.628879	5:-68959412	None:intergenic
GCTGAATAGGACTTTGGTGA+AGG	0.628923	5:-68959345	None:intergenic
TATACACCGGAATTCTCAGA+TGG	0.629638	5:-68960281	None:intergenic
AGGCATAGCTGAACCAGTGG+AGG	0.631941	5:-68959325	None:intergenic
TACATCTGCTCCACCCATGG+TGG	0.632978	5:-68960359	None:intergenic
ATGCAAGGAGGAGAGACCCA+AGG	0.635278	5:+68959097	MsaT028807.1:CDS
GGAGATGATGAACCTGCCAA+GGG	0.637245	5:-68959456	None:intergenic
CCTTTGCGAAACTCTGGGCA+GGG	0.637831	5:-68959141	None:intergenic
GAACCTGCCAAGGGAGACAT+GGG	0.638207	5:-68959447	None:intergenic
AGCCAAAGTTTCATTGACCG+TGG	0.638346	5:+68960017	MsaT028807.1:CDS
TATATGGTGCCGAGAATATG+CGG	0.638645	5:+68960300	MsaT028807.1:CDS
TGAGGGCTTCCTCACTGGAG+AGG	0.638650	5:-68959916	None:intergenic
CCTACTGGGAAAGTCGATTG+GGG	0.638724	5:+68960122	MsaT028807.1:CDS
AACAGCACAATGAAGAGCAG+TGG	0.643629	5:-68958683	None:intergenic
TAAGTGCTGAACTCATCCAA+GGG	0.645605	5:+68958878	MsaT028807.1:CDS
AACCAGTGGAGGCATACACA+GGG	0.645864	5:-68959314	None:intergenic
GCTGCAACGATGGTGGAGTG+AGG	0.652628	5:-68959512	None:intergenic
ACAGGGAAGATTGATGTCAA+CGG	0.653698	5:+68958640	MsaT028807.1:CDS
ATGCGCCAAAACATGAACAT+GGG	0.661793	5:+68959843	MsaT028807.1:CDS
CTCCCAAGAGTGGAAACATG+TGG	0.663242	5:+68959475	MsaT028807.1:CDS
AAGGGATCTCGATCTTGAGA+TGG	0.663328	5:+68959569	MsaT028807.1:CDS
TGAAGGCATAGCTGAACCAG+TGG	0.664738	5:-68959328	None:intergenic
CCCCAATCGACTTTCCCAGT+AGG	0.664994	5:-68960122	None:intergenic
GCTGTTACGGAAAGATGGGG+AGG	0.665128	5:-68959673	None:intergenic
AAGGCGGAGAAAGTCCAAGA+TGG	0.665195	5:-68960052	None:intergenic
GATTCTTGCGAGTATGCACA+TGG	0.667439	5:+68959180	MsaT028807.1:CDS
TTCGCTGTTACGGAAAGATG+GGG	0.672071	5:-68959676	None:intergenic
GGTGTTGAAACAGTTGACAT+CGG	0.677946	5:-68959423	None:intergenic
GTGACGAGCTGAACAAGCTG+AGG	0.679618	5:+68960153	MsaT028807.1:CDS
GATGAGGAGCTAAGAGACAA+CGG	0.680167	5:-68959396	None:intergenic
GATGGTGAGTTGCAGCACCA+CGG	0.682458	5:-68960034	None:intergenic
ATTCTCGGCACCATATACAC+CGG	0.692075	5:-68960294	None:intergenic
TCGAGTATATTCTTTCGACA+GGG	0.693087	5:+68958623	MsaT028807.1:CDS
CCAATCGACTTTCCCAGTAG+GGG	0.693388	5:-68960120	None:intergenic
TTGATGGATAACTTGCGCGA+AGG	0.700054	5:-68959881	None:intergenic
AAGTGCTGAACTCATCCAAG+GGG	0.716976	5:+68958879	MsaT028807.1:CDS
ATATGCCTTCCTCTCCAGTG+AGG	0.717918	5:+68959907	MsaT028807.1:CDS
CCTGCCAAGGGAGACATGGG+TGG	0.744203	5:-68959444	None:intergenic
TCGTTGCCAGACATAAACAA+CGG	0.754370	5:+68958967	MsaT028807.1:CDS
ATCCAGGTGAGAATGCAAGG+AGG	0.764804	5:+68959085	MsaT028807.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	68958358	68960409	68958358	ID=MsaG028807
Chr5	mRNA	68958358	68960409	68958358	ID=MsaT028807.1;Parent=MsaG028807
Chr5	exon	68958358	68960409	68958358	ID=MsaT028807.1.exon1;Parent=MsaT028807.1
Chr5	CDS	68958358	68960409	68958358	ID=cds.MsaT028807.1;Parent=MsaT028807.1

Gene Sequence

>MsaT028807.1

ATGTGCAGTGGTTCAAAGAGTAAACTTTCTTCATCAGATTGTGCCATGGAGGATAAGGTTGAAAAAGGTGTTCACAACTCCTCAATCTTGCTTGAATTGTCTGCATCTGATGATTTTGATGCTTTCAAGAGAGAAGTAGATGAGAAGGGTTTGGATGTGAATGAAGAAGGCTTTTGGTATGGTAGAAGAATTGGATCGAAGAAGATGGAATCCGAAAAGAGGACTCCTCTTATGATTGCTTCCTTGTTTGGAAGCACTAGAGTGGTCGAGTATATTCTTTCGACAGGGAAGATTGATGTCAACGGAGTTTGTGGTTCCGATATGGCCACTGCTCTTCATTGTGCTGTTGCTGGTGGTTCTGAGTTTTCGCTCGAGGTTGTCAAGCTCTTGCTTGATGCCGGTGCAGATGCTGATTGTCTTGATGCTAGTGAAAACAAACCGGTTGATCTGATTGCGCCAGCCTTTAATTCGTTGTCCAAATCGCGTAGGAAGGTGTTGGATATGTTTTTGAGAGGTGAGGTAAGTGCTGAACTCATCCAAGGGGAGATGGACGCTCCTTTCTCATTGAAAAAAGAAGGTGGTGATAAGAAAGAGTTTCCTATTGATATATCGTTGCCAGACATAAACAACGGTGTATATGGATCAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCATGCTCAAGGGCTTACTCTCACGATTGGACCGAGTGTCCCTTTGTTCATCCAGGTGAGAATGCAAGGAGGAGAGACCCAAGGAAATATCCTTACAGCTGTGTTCCCTGCCCAGAGTTTCGCAAAGGGTCTTGCCAGAAAGGAGATTCTTGCGAGTATGCACATGGTGTTTTCGAGTCATGGCTACATCCCGCACAATACCGAACAAGGCTTTGCAAGGACGAGACTGGCTGCAATAGAAAAGTCTGCTTCTTTGCTCACAGACCCGAAGAGCTGCGCCCTGTGTATGCCTCCACTGGTTCAGCTATGCCTTCACCAAAGTCCTATTCAGCTAGTGGAATTGACATGACATCGATGAGTCCGTTGTCTCTTAGCTCCTCATCTTTGCCGATGTCAACTGTTTCAACACCACCCATGTCTCCCTTGGCAGGTTCATCATCTCCCAAGAGTGGAAACATGTGGCAGAACAAATTAAACCTCACTCCACCATCGTTGCAGCTCCCAGGTAGCCGTTTGAAGAGTGCTTTGAGTGCAAGGGATCTCGATCTTGAGATGGAATTGCTCGGTCTGGATAGTCCTCGTCGTCAACAGCAGCAGCAACAACAACAACAATTGATTGAAGAGATTGCTAGAATCTCCTCCCCATCTTTCCGTAACAGCGAATTCAACAGAATTGCTGATTTGAATCCAACTAACCTTGATGACCTCTTAGCATCAGCTGATCCTAATTTACTATCTCAACTACATGGGCTTTCCATGCAACCATCAACACCCACACAACAGATGCATTCTCCAAGTGCAATGCAGATGCGCCAAAACATGAACATGGGCCAAAACATGAACCACCTTCGCGCAAGTTATCCATCAAACAATATGCCTTCCTCTCCAGTGAGGAAGCCCTCACCATATGGATTTGATTCATCAGCCGCAGTAGCAGCTGCAGTGATGAATTCTAGGTCTGCTGCCTTTGCAAAGCAGCGCAGCCAAAGTTTCATTGACCGTGGTGCTGCAACTCACCATCTTGGACTTTCTCCGCCTTCCAACCCTTCCTGCAGGGTGTCGTCCGGCCTTTCAGATTGGGGTTCCCCTACTGGGAAAGTCGATTGGGGTGTAAACGGTGACGAGCTGAACAAGCTGAGGAAATCCGCTTCTTTTGGGTTCAGAAATAATGGACCAGCTGCACCAACTGCATCCCAACATGCTGAGCCTGATGTCTCTTGGGTTAATTCATTGGTTAAGGATGTTCCATCTGAGAATTCCGGTGTATATGGTGCCGAGAATATGCGGCAGCTGCAGCAATATGATCTGAGTCGAGACGTGCTTCCACCATGGGTGGAGCAGATGTACAAAGAGCAGGAGCAGATGGTAGCATGA

Protein sequence

>MsaT028807.1

MCSGSKSKLSSSDCAMEDKVEKGVHNSSILLELSASDDFDAFKREVDEKGLDVNEEGFWYGRRIGSKKMESEKRTPLMIASLFGSTRVVEYILSTGKIDVNGVCGSDMATALHCAVAGGSEFSLEVVKLLLDAGADADCLDASENKPVDLIAPAFNSLSKSRRKVLDMFLRGEVSAELIQGEMDAPFSLKKEGGDKKEFPIDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHRPEELRPVYASTGSAMPSPKSYSASGIDMTSMSPLSLSSSSLPMSTVSTPPMSPLAGSSSPKSGNMWQNKLNLTPPSLQLPGSRLKSALSARDLDLEMELLGLDSPRRQQQQQQQQQLIEEIARISSPSFRNSEFNRIADLNPTNLDDLLASADPNLLSQLHGLSMQPSTPTQQMHSPSAMQMRQNMNMGQNMNHLRASYPSNNMPSSPVRKPSPYGFDSSAAVAAAVMNSRSAAFAKQRSQSFIDRGAATHHLGLSPPSNPSCRVSSGLSDWGSPTGKVDWGVNGDELNKLRKSASFGFRNNGPAAPTASQHAEPDVSWVNSLVKDVPSENSGVYGAENMRQLQQYDLSRDVLPPWVEQMYKEQEQMVA*