AlfalfaGEDB | MsaG028815

M. sativa ssp. caerulea / MsaG028815

KEGG: K09420
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028815	XP_003616662.1	88.963	299	20	3	1	297	1	288	1.37e-171	486

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028815	sp\|Q9SN12\|MYB77_ARATH	65.812	117	39	1	20	136	2	117	6.88e-49	167

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028815	tr\|G7K260\|G7K260_MEDTR	88.963	299	20	3	1	297	1	288	6.54e-172	486

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TFs/TRs:

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Gene ID	Type	Classification
MsaG028815	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028815	MtrunA17_Chr5g0437321	88.963	299	20	3	1	297	1	288	1.26e-175	486
MsaG028815	MtrunA17_Chr4g0053431	74.038	104	27	0	21	124	2	105	2.93e-52	172
MsaG028815	MtrunA17_Chr5g0401731	38.742	302	143	8	21	290	12	303	6.39e-52	173
MsaG028815	MtrunA17_Chr3g0133601	71.154	104	30	0	21	124	34	137	5.10e-51	167
MsaG028815	MtrunA17_Chr4g0008551	73.786	103	27	0	22	124	36	138	2.64e-50	169
MsaG028815	MtrunA17_Chr6g0454921	68.269	104	33	0	21	124	12	115	7.57e-48	159
MsaG028815	MtrunA17_Chr3g0125801	48.696	115	59	0	11	125	3	117	1.03e-34	127
MsaG028815	MtrunA17_Chr3g0139671	39.053	169	90	3	19	174	80	248	8.24e-34	130
MsaG028815	MtrunA17_Chr6g0480581	51.961	102	49	0	24	125	4	105	1.65e-33	122
MsaG028815	MtrunA17_Chr5g0417621	47.899	119	59	1	9	124	116	234	1.26e-32	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028815	AT3G50060.1	65.812	117	39	1	20	136	2	117	7.00e-50	167
MsaG028815	AT3G09230.1	71.154	104	30	0	21	124	52	155	7.43e-48	164
MsaG028815	AT3G55730.1	70.874	103	30	0	22	124	54	156	1.58e-47	164
MsaG028815	AT5G67300.1	69.231	104	32	0	21	124	3	106	3.36e-47	160
MsaG028815	AT4G37260.1	68.224	107	34	0	18	124	7	113	3.57e-47	161
MsaG028815	AT2G23290.1	70.192	104	31	0	21	124	10	113	7.29e-47	160
MsaG028815	AT2G39880.1	52.667	150	64	3	8	153	37	183	6.62e-46	159
MsaG028815	AT1G73410.1	51.852	108	50	1	24	129	6	113	3.19e-34	125
MsaG028815	AT1G73410.2	53.465	101	47	0	24	124	6	106	3.59e-34	124
MsaG028815	AT1G17950.1	50.495	101	50	0	24	124	5	105	1.44e-33	123

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Find 79 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAGGTGTTGAACGGT+TGG	0.567448	5:-69171550	None:intergenic
AACGGAATCCCCGGTCGTTC+TGG	0.325808	5:+69171490	MsaT028815.1:CDS
AACGGTGGTGGTGATGAAAA+CGG	0.632028	5:+69171373	MsaT028815.1:CDS
AACGGTTCCACCGGTTGCAA+CGG	0.511374	5:+69171744	MsaT028815.1:CDS
AACTCTCCGCCGTCGTCGCA+CGG	0.450623	5:+69171693	MsaT028815.1:CDS
AACTGGTCTGTGATAAGCAA+CGG	0.591578	5:+69171472	MsaT028815.1:CDS
AAGAAAACGGTGCAAGAAAC+TGG	0.412440	5:+69171455	MsaT028815.1:CDS
AAGACTTCCCAGAACGACCG+GGG	0.681485	5:-69171498	None:intergenic
AATTCCAATTCGAATTCAAA+CGG	0.513949	5:+69171355	MsaT028815.1:CDS
AATTCGAATTCAAACGGTGG+TGG	0.570811	5:+69171361	MsaT028815.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	69171337	69172230	69171337	ID=MsaG028815
Chr5	mRNA	69171337	69172230	69171337	ID=MsaT028815.1;Parent=MsaG028815
Chr5	exon	69171337	69172230	69171337	ID=MsaT028815.1.exon1;Parent=MsaT028815.1
Chr5	CDS	69171337	69172230	69171337	ID=cds.MsaT028815.1;Parent=MsaT028815.1

Gene Sequence

>MsaT028815.1

ATGATCAGTGCAAATTCGAATTCCAATTCGAATTCAAACGGTGGTGGTGATGAAAACGGTGATAAAGTGAAGGGTTCATGGAGTAAAAACGAAGATGAAACATTGGTGAAACTGGTGAAAGAAAACGGTGCAAGAAACTGGTCTGTGATAAGCAACGGAATCCCCGGTCGTTCTGGGAAGTCTTGCCGTCTGCGGTGGTGTAATCAGCTGAGTCCAACCGTTCAACACCTTCCTTTTACACCGGCGGAGGATAACATCATCATTGAAGCACATGCAGTTCATGGAAACAAATGGGCGACGATTTCTCGTCTTCTTCCAGGTAGAACAGATAACGCGATAAAAAATCACTGGAATTCAACTCTCCGCCGTCGTCGCACGGCGGCTCCTGTAGCGGTTTCACCGGTTACAACGGTTCCACCGGTTGCAACGGTTGTTCAAAGGGTTCCAACGGCGGTGCCGATGATTACCACCGGTGTGATAACCGGAAAACGTGTGAATGAAAGTTACGACAGTGATTATTATAAGGATTTGTTGAGTCTCGGCACACGTTATAAACGTCCTTGTGTTATGGTTGAGAATAATAGCGGGTCTCGTGGGTCACGTGACGGTGAAGAAACGGTAACGGAAGATGATGACGCAGGGAATAAAGGTGTTAACGTGGTTAGGACGTCGTTAAGTTTGTTTCCACCTGGTTTTCTGAAAGAAGAAGAAGAGAGAAAAGAAAAAGAAAAAGAAATTGAAGATTTTGAAGATAGTAATGATGATTTGAAGTTACTGAAAAATGAGAAATTGAGGTCGGTTCTTCAGCGCATGATAGCAGAGGAAGTTAGGAATTATGTTGATAACATGCGCCTTGGTGGTGGGTTTGCTCCTGATTCAACACTTCGAAAGTGA

Protein sequence

>MsaT028815.1

MISANSNSNSNSNGGGDENGDKVKGSWSKNEDETLVKLVKENGARNWSVISNGIPGRSGKSCRLRWCNQLSPTVQHLPFTPAEDNIIIEAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRTAAPVAVSPVTTVPPVATVVQRVPTAVPMITTGVITGKRVNESYDSDYYKDLLSLGTRYKRPCVMVENNSGSRGSRDGEETVTEDDDAGNKGVNVVRTSLSLFPPGFLKEEEERKEKEKEIEDFEDSNDDLKLLKNEKLRSVLQRMIAEEVRNYVDNMRLGGGFAPDSTLRK*