AlfalfaGEDB | MsaG029018

M. sativa ssp. caerulea / MsaG029018

KEGG: K13429
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029018	CAM06621.1	92.110	507	36	1	7	509	114	620	0.0	970

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029018	sp\|Q6UD73\|LYK3_MEDTR	92.110	507	36	1	7	509	114	620	0.0	970

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029018	tr\|A0A396HVJ5\|A0A396HVJ5_MEDTR	92.110	507	36	1	7	509	114	620	0.0	970

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029018	MtrunA17_Chr5g0439631	92.110	507	36	1	7	509	114	620	0.0	970
MsaG029018	MtrunA17_Chr5g0439701	85.404	507	61	4	7	509	115	612	0.0	865
MsaG029018	MtrunA17_Chr3g0119241	65.854	492	161	4	20	509	135	621	0.0	627
MsaG029018	MtrunA17_Chr2g0289131	62.768	513	176	5	8	509	108	616	0.0	607
MsaG029018	MtrunA17_Chr5g0439561	62.097	496	175	6	21	509	149	638	0.0	605
MsaG029018	MtrunA17_Chr5g0439571	58.939	509	177	8	10	509	143	628	0.0	534
MsaG029018	MtrunA17_Chr5g0439601	55.403	509	190	11	6	490	112	607	0.0	523
MsaG029018	MtrunA17_Chr5g0439801	56.933	476	143	10	28	490	130	556	8.15e-178	512
MsaG029018	MtrunA17_Chr5g0439621	57.047	447	161	8	62	490	301	734	4.96e-160	473
MsaG029018	MtrunA17_Chr5g0439621	53.623	138	60	3	22	155	158	295	2.22e-38	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029018	AT3G21630.1	58.656	491	193	7	22	509	134	617	0.0	568
MsaG029018	AT1G51940.1	43.522	301	158	6	193	481	323	623	1.88e-78	258
MsaG029018	AT1G70460.1	40.557	323	185	4	164	481	306	626	3.39e-70	238
MsaG029018	AT5G38560.1	35.567	388	224	9	124	489	239	622	1.60e-69	235
MsaG029018	AT1G23540.1	41.026	312	169	5	189	495	349	650	3.27e-68	233
MsaG029018	AT3G24540.1	36.247	389	206	7	108	489	111	464	5.02e-68	226
MsaG029018	AT1G68690.1	36.896	393	216	12	114	486	274	654	1.10e-67	231
MsaG029018	AT1G68690.3	36.896	393	216	12	114	486	274	654	1.10e-67	231
MsaG029018	AT1G68690.2	36.896	393	216	12	114	486	274	654	1.10e-67	231
MsaG029018	AT5G54590.3	36.923	390	207	10	115	481	3	376	2.87e-67	223

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Find 105 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGATGTATATGCTTT+TGG	0.283301	5:+71962328	MsaT029018.1:CDS
AAAATTGGTCAAGGTGGATT+TGG	0.269763	5:+71961023	MsaT029018.1:CDS
AACTTAGGTCAATATTTACA+TGG	0.530769	5:+71961674	MsaT029018.1:CDS
AAGAATGCTGTCCTGAAGAC+AGG	0.570562	5:+71962379	MsaT029018.1:CDS
AAGGCCAGCAGCACTACCAG+TGG	0.690070	5:-71960919	None:intergenic
AATCAGTCTAATCTTGATGA+AGG	0.452179	5:+71959633	MsaT029018.1:CDS
AATTGCAGATGGCTCAACTT+GGG	0.541902	5:+71962973	MsaT029018.1:intron
ACAACTATAGATCTCATGCT+TGG	0.498753	5:-71963029	None:intergenic
ACAATATAGGTGCGGTTGAT+TGG	0.395087	5:+71961599	MsaT029018.1:intron
ACACTTCACACTCGGCTTGT+GGG	0.467124	5:+71962080	MsaT029018.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	71959313	71963145	71959313	ID=MsaG029018
Chr5	mRNA	71959313	71963145	71959313	ID=MsaT029018.1;Parent=MsaG029018
Chr5	exon	71959313	71959372	71959313	ID=MsaT029018.1.exon1;Parent=MsaT029018.1
Chr5	CDS	71959313	71959372	71959313	ID=cds.MsaT029018.1;Parent=MsaT029018.1
Chr5	exon	71959483	71959726	71959483	ID=MsaT029018.1.exon2;Parent=MsaT029018.1
Chr5	CDS	71959483	71959726	71959483	ID=cds.MsaT029018.1;Parent=MsaT029018.1
Chr5	exon	71960253	71960286	71960253	ID=MsaT029018.1.exon3;Parent=MsaT029018.1
Chr5	CDS	71960253	71960286	71960253	ID=cds.MsaT029018.1;Parent=MsaT029018.1
Chr5	exon	71960411	71960415	71960411	ID=MsaT029018.1.exon4;Parent=MsaT029018.1
Chr5	CDS	71960411	71960415	71960411	ID=cds.MsaT029018.1;Parent=MsaT029018.1
Chr5	exon	71960531	71960683	71960531	ID=MsaT029018.1.exon5;Parent=MsaT029018.1
Chr5	CDS	71960531	71960683	71960531	ID=cds.MsaT029018.1;Parent=MsaT029018.1
Chr5	exon	71960874	71961076	71960874	ID=MsaT029018.1.exon6;Parent=MsaT029018.1
Chr5	CDS	71960874	71961076	71960874	ID=cds.MsaT029018.1;Parent=MsaT029018.1
Chr5	exon	71961248	71961337	71961248	ID=MsaT029018.1.exon7;Parent=MsaT029018.1
Chr5	CDS	71961248	71961337	71961248	ID=cds.MsaT029018.1;Parent=MsaT029018.1
Chr5	exon	71961608	71961701	71961608	ID=MsaT029018.1.exon8;Parent=MsaT029018.1
Chr5	CDS	71961608	71961701	71961608	ID=cds.MsaT029018.1;Parent=MsaT029018.1
Chr5	exon	71961787	71961938	71961787	ID=MsaT029018.1.exon9;Parent=MsaT029018.1
Chr5	CDS	71961787	71961938	71961787	ID=cds.MsaT029018.1;Parent=MsaT029018.1
Chr5	exon	71962035	71962126	71962035	ID=MsaT029018.1.exon10;Parent=MsaT029018.1
Chr5	CDS	71962035	71962126	71962035	ID=cds.MsaT029018.1;Parent=MsaT029018.1
Chr5	exon	71962300	71962438	71962300	ID=MsaT029018.1.exon11;Parent=MsaT029018.1
Chr5	CDS	71962300	71962438	71962300	ID=cds.MsaT029018.1;Parent=MsaT029018.1
Chr5	exon	71962618	71962716	71962618	ID=MsaT029018.1.exon12;Parent=MsaT029018.1
Chr5	CDS	71962618	71962716	71962618	ID=cds.MsaT029018.1;Parent=MsaT029018.1
Chr5	exon	71962981	71963145	71962981	ID=MsaT029018.1.exon13;Parent=MsaT029018.1
Chr5	CDS	71962981	71963145	71962981	ID=cds.MsaT029018.1;Parent=MsaT029018.1

Gene Sequence

>MsaT029018.1

ATGGCAATCTTTTTGCCTTTTATAGGGTCAACATTCCATTCCCATGTGAATGTATTGGAGTTCAATAGTTATGATCCAGATCATATACCTGCTAAGGCTAAGGTTAATGTAACTGTCAATTGTTCTTGTGGGAACAGCCAGATTTCAAAAGATTATGGGTTGTTTATTACCTATCCACTCAGGACTGATGATACTCTTCAGAAGATTGCAAATCAGTCTAATCTTGATGAAGGGTTGATACAGAGTTACAATTCTGGTGTCAATTTCAGCAAAGGAAGTGGGATAGTGTTCATTCCAGGAAGAGATCAAAATGGACATTATTTTCCTTTGTATCCTAAAACAGGTCTTGCTAAGGGTTCAGCTGTTGGTATAGCTATGGCAGGAATATTTGGGGTTCTATTATTTGTTATCTATATATATGCCAAATACTTCCAAAAGAAGGAAGAAGAGAAAACTAAACTTCCACAAACTTCTAGGGCATTTTCAACTCAAGATGCCGCAGGTAGTGCAGAATATGAAACTTCAGGATCTAGTGGGCATGCCACTGGTAGTGCTGCTGGCCTTACAGGTATTATGGTGGCAAAGTCGACAGAGTTTTCATATCAAGAATTAGCCAAGGCTACAAATAATTTCAGCTTGGATAATAAAATTGGTCAAGGTGGATTTGGAGCTGTCTACTATGCAGAACTTAGAGGCGAGAAAACAGCAATTAAGAAGATGGATGTACAAGCATCGTCAGAATTTCTTTGTGAGTTGAAGGTCTTAACACATGTTCATCACTTGAATCTGGTGCGGTTGATTGGATATTGCGTTGAGGGATCACTTTTCCTTGTATATGAACACATTGACAATGGAAACTTAGGTCAATATTTACATGGTATAGGTACAGAACCATTACCATGGTCTAGTAGAGTGCAGATTGCTCTAGATTCAGCCAGAGGCCTTGAATACATTCATGAACACACTGTGCCTGTTTATATCCATCGCGACGTAAAATCAGCAAATATATTGATAGACAAAAACTTGCGTGGAAAGGTTGCTGATTTTGGCTTGACCAAACTTATTGAAGTTGGAAACTCCACACTTCACACTCGGCTTGTGGGAACATTTGGATACATGCCACCAGAATATGCTCAATATGGCGATGTTTCTCCAAAAATAGATGTATATGCTTTTGGCGTTGTTCTTTATGAACTTATTACTGCAAAGAATGCTGTCCTGAAGACAGGTGAATCTGTTGCTGAATCAAAAGGTCTTGTACAATTGTTTGAAGAAGCACTTCATCAAATGGATCCTTTAGAAGGTCTTCGAAAATTGGTGGATCCTAGGCTTAAAGAAAACTATCCCATTGATTCTGTTCTCAAGATGGCTCAACTTGGGAGAGCATGTACGAGAGACAATCCGCTACTACGCCCAAGCATGAGATCTATAGTTGTTGCTCTTATGACACTTTCATCACCAACTGAAGATTGTGATGATGACTCTTCATATGAAAATCAATCTCTCATAAATCTGTTGTCAACTAGATGA

Protein sequence

>MsaT029018.1

MAIFLPFIGSTFHSHVNVLEFNSYDPDHIPAKAKVNVTVNCSCGNSQISKDYGLFITYPLRTDDTLQKIANQSNLDEGLIQSYNSGVNFSKGSGIVFIPGRDQNGHYFPLYPKTGLAKGSAVGIAMAGIFGVLLFVIYIYAKYFQKKEEEKTKLPQTSRAFSTQDAAGSAEYETSGSSGHATGSAAGLTGIMVAKSTEFSYQELAKATNNFSLDNKIGQGGFGAVYYAELRGEKTAIKKMDVQASSEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGIGTEPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNLRGKVADFGLTKLIEVGNSTLHTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELITAKNAVLKTGESVAESKGLVQLFEEALHQMDPLEGLRKLVDPRLKENYPIDSVLKMAQLGRACTRDNPLLRPSMRSIVVALMTLSSPTEDCDDDSSYENQSLINLLSTR*