AlfalfaGEDB | MsaG029023

M. sativa ssp. caerulea / MsaG029023

KEGG: K13429
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700
PFAM: PF01476.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029023	XP_024640165.1	96.797	562	18	0	1	562	51	612	0.0	1114

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029023	sp\|Q6UD73\|LYK3_MEDTR	81.961	571	93	4	1	562	51	620	0.0	965

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029023	tr\|A8WHB3\|A8WHB3_MEDTR	96.797	562	18	0	1	562	51	612	0.0	1114

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000135	MsaG029023	0.852054	1.136911e-60	6.617290e-58
MsaG000242	MsaG029023	0.843891	1.980184e-58	8.749329e-56
MsaG000250	MsaG029023	0.818797	2.837114e-52	6.045347e-50
MsaG000306	MsaG029023	0.812046	8.865018e-51	1.591585e-48
MsaG000385	MsaG029023	0.822790	3.460635e-53	8.198151e-51
MsaG000415	MsaG029023	0.820689	1.053932e-52	2.360496e-50
MsaG000419	MsaG029023	0.827535	2.647326e-54	7.145683e-52
MsaG000435	MsaG029023	0.843086	3.242243e-58	1.396043e-55
MsaG000497	MsaG029023	0.807729	7.454652e-50	1.205281e-47
MsaG000613	MsaG029023	0.838302	5.730843e-57	2.121542e-54

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029023	MtrunA17_Chr5g0439701	96.797	562	18	0	1	562	51	612	0.0	1114
MsaG029023	MtrunA17_Chr5g0439631	81.961	571	93	4	1	562	51	620	0.0	965
MsaG029023	MtrunA17_Chr3g0119241	60.901	555	209	4	15	562	68	621	0.0	672
MsaG029023	MtrunA17_Chr5g0439561	56.446	574	233	6	1	562	70	638	0.0	643
MsaG029023	MtrunA17_Chr2g0289131	59.358	561	213	4	15	562	58	616	0.0	636
MsaG029023	MtrunA17_Chr5g0439601	54.659	558	223	11	1	537	53	601	0.0	573
MsaG029023	MtrunA17_Chr5g0439571	54.867	565	227	10	1	560	85	626	0.0	555
MsaG029023	MtrunA17_Chr5g0439801	52.698	556	201	11	1	543	50	556	0.0	543
MsaG029023	MtrunA17_Chr5g0439621	56.463	441	164	8	124	543	301	734	2.61e-155	462
MsaG029023	MtrunA17_Chr5g0439621	46.957	230	115	5	1	226	78	304	8.17e-58	206

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029023	AT3G21630.1	56.272	558	232	8	13	562	64	617	0.0	614
MsaG029023	AT1G51940.1	42.553	329	177	7	246	562	323	651	2.40e-80	265
MsaG029023	AT3G24540.1	37.831	378	204	8	176	548	119	470	4.05e-69	231
MsaG029023	AT1G70460.1	39.130	345	191	6	211	550	304	634	7.32e-69	236
MsaG029023	AT1G10620.1	35.385	390	219	6	176	534	256	643	6.49e-67	231
MsaG029023	AT3G24550.1	41.639	305	170	5	247	546	264	565	6.49e-67	229
MsaG029023	AT1G23540.1	36.857	350	204	6	206	550	315	652	1.60e-66	229
MsaG029023	AT5G38560.1	34.398	407	235	9	177	553	229	633	1.96e-66	228
MsaG029023	AT2G28590.1	39.482	309	173	6	244	543	78	381	1.56e-65	219
MsaG029023	AT5G02800.1	41.722	302	152	9	252	539	61	352	2.43e-65	218

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Find 101 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGATGTATATGCTTT+TGG	0.243026	5:+72008586	MsaT029023.1:CDS
AAAATTGGTCAAGGTGGATT+TGG	0.263345	5:+72002658	MsaT029023.1:CDS
AAATACAGTAGCATGCCCAC+CGG	0.665881	5:-72002554	None:intergenic
AACCAATCTAATCTTGATGA+AGG	0.464240	5:+72001321	MsaT029023.1:CDS
AACTTGGGTCAATATTTGCA+TGG	0.573201	5:+72007991	MsaT029023.1:CDS
AACTTTCTAAAGGATCAACC+TGG	0.644581	5:-72008893	None:intergenic
AAGAATGCTGTTCTGAAGAC+AGG	0.563375	5:+72008637	MsaT029023.1:CDS
AATTTGCGAAAACTTTCTAA+AGG	0.469783	5:-72008903	None:intergenic
ACAACTATAGATCTCATACT+TGG	0.487337	5:-72009410	None:intergenic
ACAATATAGGTGCGGTTGAT+TGG	0.395087	5:+72007916	MsaT029023.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	72000925	72009526	72000925	ID=MsaG029023
Chr5	mRNA	72000925	72009526	72000925	ID=MsaT029023.1;Parent=MsaG029023
Chr5	exon	72000925	72001414	72000925	ID=MsaT029023.1.exon1;Parent=MsaT029023.1
Chr5	CDS	72000925	72001414	72000925	ID=cds.MsaT029023.1;Parent=MsaT029023.1
Chr5	exon	72001835	72001868	72001835	ID=MsaT029023.1.exon2;Parent=MsaT029023.1
Chr5	CDS	72001835	72001868	72001835	ID=cds.MsaT029023.1;Parent=MsaT029023.1
Chr5	exon	72001982	72001986	72001982	ID=MsaT029023.1.exon3;Parent=MsaT029023.1
Chr5	CDS	72001982	72001986	72001982	ID=cds.MsaT029023.1;Parent=MsaT029023.1
Chr5	exon	72002104	72002247	72002104	ID=MsaT029023.1.exon4;Parent=MsaT029023.1
Chr5	CDS	72002104	72002247	72002104	ID=cds.MsaT029023.1;Parent=MsaT029023.1
Chr5	exon	72002527	72002711	72002527	ID=MsaT029023.1.exon5;Parent=MsaT029023.1
Chr5	CDS	72002527	72002711	72002527	ID=cds.MsaT029023.1;Parent=MsaT029023.1
Chr5	exon	72002868	72002957	72002868	ID=MsaT029023.1.exon6;Parent=MsaT029023.1
Chr5	CDS	72002868	72002957	72002868	ID=cds.MsaT029023.1;Parent=MsaT029023.1
Chr5	exon	72007925	72008018	72007925	ID=MsaT029023.1.exon7;Parent=MsaT029023.1
Chr5	CDS	72007925	72008018	72007925	ID=cds.MsaT029023.1;Parent=MsaT029023.1
Chr5	exon	72008107	72008258	72008107	ID=MsaT029023.1.exon8;Parent=MsaT029023.1
Chr5	CDS	72008107	72008258	72008107	ID=cds.MsaT029023.1;Parent=MsaT029023.1
Chr5	exon	72008350	72008441	72008350	ID=MsaT029023.1.exon9;Parent=MsaT029023.1
Chr5	CDS	72008350	72008441	72008350	ID=cds.MsaT029023.1;Parent=MsaT029023.1
Chr5	exon	72008558	72008696	72008558	ID=MsaT029023.1.exon10;Parent=MsaT029023.1
Chr5	CDS	72008558	72008696	72008558	ID=cds.MsaT029023.1;Parent=MsaT029023.1
Chr5	exon	72008876	72008974	72008876	ID=MsaT029023.1.exon11;Parent=MsaT029023.1
Chr5	CDS	72008876	72008974	72008876	ID=cds.MsaT029023.1;Parent=MsaT029023.1
Chr5	exon	72009362	72009526	72009362	ID=MsaT029023.1.exon12;Parent=MsaT029023.1
Chr5	CDS	72009362	72009526	72009362	ID=cds.MsaT029023.1;Parent=MsaT029023.1

Gene Sequence

>MsaT029023.1

ATGCAATCAAAGATTGTATCAGTGTCTAGTTTGTCTGATGTTATAATAAGCTACAATAAAGACAAAGTATCCAAAAATGGCAATCTTTTTGCCTTTTCTAGAGTCAACATTCCATTCCCATGTGAATGTATAGGAGGTGAGTTTCTGGGACATGTATTTGAATACTCATCAAAAGAAGGAGATACTTATGATTTGATTGCCAATTCTTATTATGCAAGTTTGACTACAGTTGAGCTTTTGAAAAAGTTCAATAGTTATGATCCAGATCATATACCTGCTAAGGCTAAGGTTAATGTAACTGTCAATTGTTCTTGTGGGAACAGCCAGATTTCAAAAGATTATGGGTTGTTTATTACCTATCCACTCAGAACTGATGATACTCTTCAGAAGATTGCTAACCAATCTAATCTTGATGAAGGGTTGATACAGAGTTACAATTCTGGTGTCAATTTCAGCAAAGGAAGTGGGATAGTGTTCATTCCAGGAAGAGATCAAAAAGGAGATTTTGTTCACTTATATCCTAGATCAGGTCTTGCTAAGGGTGCAACAGTGGGTATAATAATAGCAGGAATATTTGGACTTCTATTATTAGTTATCTATATATATGTTAGATACTTCAAAAAGAAGGAAGAAGAGAAAACTAAACTGGCTGAAGCACTTTCAACTCAAGATGGTAGTGCAGAGTATGAAACTTCAGGATCCGGTGGGCATGCTACTGTATTTACAGGCATTATGGTGGCAAAGTCAACAGAGTTTACATATCAAGAATTAGCCAAGGCTACAAATAATTTCAGCTTAGATTATAAAATTGGTCAAGGTGGATTTGGAGCTGTCTACTATGCAGAACTTAGAGGCGAGAAAACAGCAATTAAGAAGATGGATGTACAAGCATCGTCAGAATTTCTTTGTGAGTTGAAGGTCTTAACACATGTTCATCACTTGAATCTGGTGCGGTTGATTGGATATTGCGTTGAAGGATCACTTTTCCTTATCTATGAACATATTGACAATGGAAACTTGGGTCAATATTTGCATGGTACAGGTAAAGAACCATTGCCATGGTCTAGTAGAGTGGAAATTGCTCTAGATTCAGCAAGAGGCCTTGAATACATTCATGAACATACTGTGCCTATGTATATCCACCGTGATGTAAAATCAGCAAATATATTGATAGACAAAAACTTACGTGGAAAGGTTGCAGATTTTGGTTTGACCAAACTTCTTGAAGTTGGAAACTCCACACTTCACACTCGTCTTGTAGGAACATTTGGATACATGCCACCAGAATATGCTCAATATGGTGATGTTTCTCCAAAAATAGATGTATATGCTTTTGGAGTTGTTCTTTTTGAACTTATTTCTGCAAAGAATGCTGTTCTGAAGACAGGTGAATTTGTTGCTGAATCAAGGGGTCTTGTAGCCTTGTTTGATGAAGCACTTAACCAGGTTGATCCTTTAGAAAGTTTTCGCAAATTGGTGGATCCTAGACTTAGAGAAGACTATCCAATTGATTCTGTTCTAAAGATGGCAGAACTTGGAAGAGAATGTACCAAGGACAATCCACTACTACGCCCAAGTATGAGATCTATAGTTGTTTCTCTTATGTCACTCTTATCACCTAGTGAAGACTGTGATGGTGACACTTCTGATGAAAATCAAACTATCATAAATCTCTTGTCAGTGAGATGA

Protein sequence

>MsaT029023.1

MQSKIVSVSSLSDVIISYNKDKVSKNGNLFAFSRVNIPFPCECIGGEFLGHVFEYSSKEGDTYDLIANSYYASLTTVELLKKFNSYDPDHIPAKAKVNVTVNCSCGNSQISKDYGLFITYPLRTDDTLQKIANQSNLDEGLIQSYNSGVNFSKGSGIVFIPGRDQKGDFVHLYPRSGLAKGATVGIIIAGIFGLLLLVIYIYVRYFKKKEEEKTKLAEALSTQDGSAEYETSGSGGHATVFTGIMVAKSTEFTYQELAKATNNFSLDYKIGQGGFGAVYYAELRGEKTAIKKMDVQASSEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLIYEHIDNGNLGQYLHGTGKEPLPWSSRVEIALDSARGLEYIHEHTVPMYIHRDVKSANILIDKNLRGKVADFGLTKLLEVGNSTLHTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLFELISAKNAVLKTGEFVAESRGLVALFDEALNQVDPLESFRKLVDPRLREDYPIDSVLKMAELGRECTKDNPLLRPSMRSIVVSLMSLLSPSEDCDGDTSDENQTIINLLSVR*