AlfalfaGEDB | MsaG029035

M. sativa ssp. caerulea / MsaG029035

KEGG: K08864
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0071704 GO:0140096 GO:1900368 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029035	XP_003617013.1	97.033	674	4	3	1	662	1	670	0.0	1327

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029035	sp\|Q39238\|TSL_ARATH	66.522	690	201	8	1	662	1	688	0.0	901

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029035	tr\|G7KHC0\|G7KHC0_MEDTR	97.033	674	4	3	1	662	1	670	0.0	1327

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000135	MsaG029035	0.888598	1.119847e-72	3.069900e-69
MsaG000139	MsaG029035	0.809482	3.161255e-50	5.331665e-48
MsaG000142	MsaG029035	0.829877	7.232857e-55	2.085932e-52
MsaG000242	MsaG029035	0.840166	1.893393e-57	7.429807e-55
MsaG000325	MsaG029035	0.812914	5.740095e-51	1.053032e-48
MsaG000385	MsaG029035	0.840967	1.170635e-57	4.710894e-55
MsaG000408	MsaG029035	0.818037	4.209682e-52	8.795068e-50
MsaG000435	MsaG029035	0.801238	1.657704e-48	2.304754e-46
MsaG000613	MsaG029035	0.859037	1.068540e-62	8.009808e-60
MsaG000638	MsaG029035	0.846231	4.654291e-59	2.221323e-56

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029035	MtrunA17_Chr5g0440001	97.033	674	4	3	1	662	1	670	0.0	1327
MsaG029035	MtrunA17_Chr5g0440131	93.134	568	10	3	124	662	8	575	0.0	1063
MsaG029035	MtrunA17_Chr5g0440171	86.070	603	60	7	77	662	9	604	0.0	984
MsaG029035	MtrunA17_Chr5g0440051	79.730	370	51	1	274	643	3	348	0.0	612
MsaG029035	MtrunA17_Chr5g0440181	84.179	335	48	1	320	654	4	333	0.0	592
MsaG029035	MtrunA17_Chr5g0440021	93.776	241	15	0	403	643	31	271	8.22e-170	486
MsaG029035	MtrunA17_Chr3g0093631	93.548	217	13	1	382	598	2	217	1.91e-149	431
MsaG029035	MtrunA17_Chr5g0440041	93.976	166	8	1	480	643	17	182	4.77e-108	324
MsaG029035	MtrunA17_Chr0c14g0493691	100.000	64	0	0	234	297	1	64	1.87e-35	128
MsaG029035	MtrunA17_Chr3g0140631	32.114	246	137	8	401	642	43	262	6.35e-24	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029035	AT5G20930.1	66.522	690	201	8	1	662	1	688	0.0	901
MsaG029035	AT2G45490.1	32.234	273	144	11	401	658	28	274	2.71e-24	103
MsaG029035	AT2G45490.2	34.146	246	132	10	401	642	28	247	3.41e-24	102
MsaG029035	AT2G25880.1	32.114	246	137	8	401	642	31	250	1.61e-22	98.6
MsaG029035	AT2G25880.4	32.114	246	137	8	401	642	44	263	3.19e-22	98.2
MsaG029035	AT3G53930.1	31.687	243	141	10	395	633	20	241	3.57e-22	102
MsaG029035	AT3G53930.2	31.687	243	141	10	395	633	20	241	4.04e-22	102
MsaG029035	AT1G66750.1	34.298	242	139	10	394	634	12	234	4.49e-22	98.6
MsaG029035	AT4G32830.1	31.707	246	138	8	401	642	37	256	6.96e-22	97.1
MsaG029035	AT3G13530.1	25.685	292	185	10	378	657	3	274	9.86e-22	101

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Find 131 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGCATTCGAGATGAAGA+TGG	0.573274	5:+72242390	MsaT029035.1:CDS
AAAGAGGAGACATACAAGCT+GGG	0.632339	5:-72241094	None:intergenic
AACAATATGACGATGGACCA+AGG	0.608478	5:-72242798	None:intergenic
AACACCTATATTGCCTGAGA+AGG	0.583381	5:+72243308	MsaT029035.1:CDS
AACTGTCTTATCTGAGACCT+GGG	0.549763	5:+72241041	MsaT029035.1:CDS
AAGAAATCTGGTCGTGGAAG+AGG	0.396651	5:+72239351	MsaT029035.1:CDS
AAGACCAAAATCAGTCACTT+TGG	0.528872	5:-72243451	None:intergenic
AAGACCTACTGTTTCTAATG+AGG	0.569301	5:+72244058	MsaT029035.1:CDS
AAGATCGTGGAGAATGATGT+GGG	0.634977	5:+72243477	MsaT029035.1:CDS
AAGCTGGAAGCTCGAATGGT+GGG	0.602797	5:+72236537	MsaT029035.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	72236459	72244787	72236459	ID=MsaG029035
Chr5	mRNA	72236459	72244787	72236459	ID=MsaT029035.1;Parent=MsaG029035
Chr5	exon	72236459	72236683	72236459	ID=MsaT029035.1.exon1;Parent=MsaT029035.1
Chr5	CDS	72236459	72236683	72236459	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72238957	72239043	72238957	ID=MsaT029035.1.exon2;Parent=MsaT029035.1
Chr5	CDS	72238957	72239043	72238957	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72239291	72239485	72239291	ID=MsaT029035.1.exon3;Parent=MsaT029035.1
Chr5	CDS	72239291	72239485	72239291	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72239594	72239644	72239594	ID=MsaT029035.1.exon4;Parent=MsaT029035.1
Chr5	CDS	72239594	72239644	72239594	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72239855	72239962	72239855	ID=MsaT029035.1.exon5;Parent=MsaT029035.1
Chr5	CDS	72239855	72239962	72239855	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72240522	72240566	72240522	ID=MsaT029035.1.exon6;Parent=MsaT029035.1
Chr5	CDS	72240522	72240566	72240522	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72240840	72240952	72240840	ID=MsaT029035.1.exon7;Parent=MsaT029035.1
Chr5	CDS	72240840	72240952	72240840	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72241035	72241101	72241035	ID=MsaT029035.1.exon8;Parent=MsaT029035.1
Chr5	CDS	72241035	72241101	72241035	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72241698	72241764	72241698	ID=MsaT029035.1.exon9;Parent=MsaT029035.1
Chr5	CDS	72241698	72241764	72241698	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72242160	72242254	72242160	ID=MsaT029035.1.exon10;Parent=MsaT029035.1
Chr5	CDS	72242160	72242254	72242160	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72242321	72242500	72242321	ID=MsaT029035.1.exon11;Parent=MsaT029035.1
Chr5	CDS	72242321	72242500	72242321	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72242674	72242884	72242674	ID=MsaT029035.1.exon12;Parent=MsaT029035.1
Chr5	CDS	72242674	72242884	72242674	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72243280	72243544	72243280	ID=MsaT029035.1.exon13;Parent=MsaT029035.1
Chr5	CDS	72243280	72243544	72243280	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72243673	72243727	72243673	ID=MsaT029035.1.exon14;Parent=MsaT029035.1
Chr5	CDS	72243673	72243727	72243673	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72243924	72244085	72243924	ID=MsaT029035.1.exon15;Parent=MsaT029035.1
Chr5	CDS	72243924	72244085	72243924	ID=cds.MsaT029035.1;Parent=MsaT029035.1
Chr5	exon	72244722	72244787	72244722	ID=MsaT029035.1.exon16;Parent=MsaT029035.1
Chr5	CDS	72244722	72244787	72244722	ID=cds.MsaT029035.1;Parent=MsaT029035.1

Gene Sequence

>MsaT029035.1

ATGTCGGATGATATGCTAGTGCATTTTTCGTCGAATTCTTCGAACCAATCGGATCAGTCTCTGCCTACAAAGATTGCTAAGCTGGAAGCTCGAATGGTGGGAAAAGGTTCTTCAACTGCTTCTCAGCAACAAGGTTGGCCTTCTGTTTCTTCTGCTGGGAAATTCAGTGGAGTAGCAGCTGAAGAAATGGTTGAGCCTTGCAGTTCAAGTGATTCTGATGATGATAATGGTGCGGATTTCTTGATTCAAGCCAACACACGTAAGCGCTTAAAACCTCACGATGATAACGATGATGTTTTTGAACGTGCTGAGGTTGTTACTGAAGGAAGACAAACTAGTTTGGAGACAAAAAATAATGTTGATGCAAATAGAAAGAAATCTGGTCGTGGAAGAGGGAGTTCTGGTTCAAGCAGAGGTCGTGGTTCCAAGTCTAATGATCAGACCAGAACACAAATTTCTTCAACAGTTTCGGCTTCAAATGGTCAGAATGAGAATGTATGTTGTAAAGATGGTAGACTCAAAGATCCGTTTCGTAATGATAACGGCGCTTCATTAGAGGAGGAGATTGCATCTTTACGTGCAAAAGTTGTTCTGTTGGAGGAAGACTTACGTAAAGCAAAGCAAGAAGCCTCTCAGCATCAGAATATCTGTCCACAGTTAGAAAAGGAACTGAAGGAATTGAAAGATCTTGAGGAGCAAATGAAACCTAAGAGAACAAAAATAATATCCGATTTGCTGATATCAGTTTCAAAGGCTGAGAGACAAGAAGCAAGATTAAAAGTACGACAGGACTCATTGAGACTCGGAAATGTTGGTGTAATCAGAGCTGGAACTGTCTTATCTGAGACCTGGGAAGATGGTCAGGCGTTAAAGGATCTGAATGCCCAGCTTAAACAACTACTCGAAACAAAGGAGGCAATTGAGCGCCAGCGCAAGTTATTCAAGAAAAAACAATCTGATAAGGGTGATGGAATAGATGCAGAGGCTGGATTGCTGGAAGATATTCTCATTCACGAGGAAATCTATAAGTCTCGACTAGCCAGCATTAAACGGGAAGAAGAAATTGTTTTGCGAGAGAGGGACCGCTACGAACTAGAGAAGGGAAGACTAATTCGTGAAATGAAACGCATTCGAGATGAAGATGGTTCACGGTTCAACAATTTTCAGATTCTAAACCATCGTTACGCCCTTCTAAACCTTCTTGGAAAGGGAGGATTCAGCGAGGTGTACAAGGCTTTTGATTTGGTGGAGCATAGATATGTTGCATGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATAAGGCATGCAATTCGGGAGTATAATATTCACAAGACCTTGGTCCATCGTCATATTGTTCGTTTATGGGACATCTTTGAGATTGATCCAAATACATTCTGCACTGTTCTAGAGTATTGCAGCGGGAAAGATCTTGATGCTGTTCTTAAAGCAACACCTATATTGCCTGAGAAGGAGGCTAGAGTGATTTTAGTTCAGATTTTCCAAGGCCTTATTTACATGAATAAAAGAGCACTGAAGATTATCCATTATGATTTAAAGCCTGGAAATGTTTTGTTTGATGAGCTTGGTATTGCCAAAGTGACTGATTTTGGTCTTAGCAAGATCGTGGAGAATGATGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGGGCTGGAACGTATTGGTATTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACGCCTCTTATATCATCCAAGGTTGATGTCTGGTCTGCTGGTATTTTGTTTTATCAAATGCTCTTTGGCAGACGTCCTTTCGGACATGACCAAACACAAGAGAGAATACTTCGTGAAGACACAATTATTAAGGCACACAAGGTTGAATTTCCCTCAAGACCTACTGTTTCTAATGAGGCAAAGGCTGAGAGACCAGATGTATTGACCATTGCTCAAGATCCATATCTCACATACGTGAAGAAGCAGTGA

Protein sequence

>MsaT029035.1

MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKGSSTASQQQGWPSVSSAGKFSGVAAEEMVEPCSSSDSDDDNGADFLIQANTRKRLKPHDDNDDVFERAEVVTEGRQTSLETKNNVDANRKKSGRGRGSSGSSRGRGSKSNDQTRTQISSTVSASNGQNENVCCKDGRLKDPFRNDNGASLEEEIASLRAKVVLLEEDLRKAKQEASQHQNICPQLEKELKELKDLEEQMKPKRTKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTVLSETWEDGQALKDLNAQLKQLLETKEAIERQRKLFKKKQSDKGDGIDAEAGLLEDILIHEEIYKSRLASIKREEEIVLRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDPNTFCTVLEYCSGKDLDAVLKATPILPEKEARVILVQIFQGLIYMNKRALKIIHYDLKPGNVLFDELGIAKVTDFGLSKIVENDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILFYQMLFGRRPFGHDQTQERILREDTIIKAHKVEFPSRPTVSNEAKAERPDVLTIAQDPYLTYVKKQ*