AlfalfaGEDB | MsaG029041

M. sativa ssp. caerulea / MsaG029041

KEGG: -
GO: GO:0001101 GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004888 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009975 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019199 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030054 GO:0033218 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0042221 GO:0042277 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044464 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0052652 GO:0055044 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:0098542 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
PFAM: PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029041	XP_003617047.1	91.538	780	65	1	1	779	37	816	0.0	1436

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029041	sp\|Q9SSL9\|PEPR1_ARATH	43.918	781	389	11	36	785	197	959	0.0	582
MsaG029041	sp\|Q9SSL9\|PEPR1_ARATH	38.407	565	312	7	7	537	46	608	1.01e-96	328
MsaG029041	sp\|Q9SSL9\|PEPR1_ARATH	32.365	241	154	4	33	272	505	737	2.87e-20	100

Showing 1 to 3 of 3 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029041	tr\|G7KHF4\|G7KHF4_MEDTR	91.538	780	65	1	1	779	37	816	0.0	1436

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000029	MsaG029041	0.839305	3.162456e-57	1.207884e-54
MsaG000045	MsaG029041	0.808208	5.902566e-50	9.653683e-48
MsaG000083	MsaG029041	0.817360	5.973441e-52	1.226425e-49
MsaG000151	MsaG029041	0.805565	2.123978e-49	3.262565e-47
MsaG000153	MsaG029041	0.823751	2.069195e-53	5.030998e-51
MsaG000213	MsaG029041	0.802983	7.282844e-49	1.053733e-46
MsaG000235	MsaG029041	0.826485	4.707997e-54	1.234082e-51
MsaG000243	MsaG029041	0.849339	6.542806e-60	3.467135e-57
MsaG000247	MsaG029041	0.866871	4.176411e-65	4.255383e-62
MsaG000292	MsaG029041	0.820683	1.056841e-52	2.366666e-50

Showing 1 to 10 of 1,065 entries

Previous1 2 3 4 5…107Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029041	MtrunA17_Chr5g0440211	91.538	780	65	1	1	779	37	816	0.0	1436
MsaG029041	MtrunA17_Chr5g0440221	73.819	783	199	3	1	779	37	817	0.0	1120
MsaG029041	MtrunA17_Chr5g0440221	45.798	238	95	4	545	778	1102	1309	1.17e-50	192
MsaG029041	MtrunA17_Chr5g0440231	74.264	781	163	5	1	779	37	781	0.0	1102
MsaG029041	MtrunA17_Chr5g0440191	68.000	850	201	4	1	779	38	887	0.0	1099
MsaG029041	MtrunA17_Chr2g0334191	56.606	719	284	9	68	779	220	917	0.0	737
MsaG029041	MtrunA17_Chr2g0334191	36.833	562	302	8	1	535	32	567	1.00e-85	294
MsaG029041	MtrunA17_Chr2g0334191	35.079	191	122	2	35	224	498	687	1.21e-19	94.7
MsaG029041	MtrunA17_Chr2g0334191	31.628	215	145	2	33	246	472	685	4.86e-18	89.4
MsaG029041	MtrunA17_Chr1g0197051	50.834	779	331	8	26	779	180	931	0.0	684

Showing 1 to 10 of 1,813 entries

Previous1 2 3 4 5…182Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029041	AT1G73080.1	43.918	781	389	11	36	785	197	959	0.0	582
MsaG029041	AT1G73080.1	38.407	565	312	7	7	537	46	608	1.02e-97	328
MsaG029041	AT1G73080.1	32.365	241	154	4	33	272	505	737	2.91e-21	100
MsaG029041	AT1G17750.1	40.973	781	402	9	36	785	174	926	3.21e-179	543
MsaG029041	AT1G17750.1	36.299	562	301	8	1	531	38	573	2.26e-83	288
MsaG029041	AT1G17750.1	32.353	238	126	5	35	272	508	710	4.95e-21	99.4
MsaG029041	AT2G33170.2	35.669	785	452	14	34	779	181	951	1.85e-129	414
MsaG029041	AT2G33170.2	32.727	550	335	6	15	530	58	606	7.39e-76	267
MsaG029041	AT2G33170.1	35.669	785	452	14	34	779	181	951	1.85e-129	414
MsaG029041	AT2G33170.1	32.727	550	335	6	15	530	58	606	7.39e-76	267

Showing 1 to 10 of 1,543 entries

Previous1 2 3 4 5…155Next

Find 172 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAACACTCCACCTTA+AGG	0.390858	5:-72318845	None:intergenic
AAACAAGTTACACATAGGAG+AGG	0.650300	5:-72318244	None:intergenic
AAACGAACACTCCACCTTAA+GGG	0.447464	5:-72318844	None:intergenic
AAATGTTGGAGCCACTGGAT+TGG	0.486179	5:+72318739	MsaT029041.1:CDS
AAATTGTAATGATAGAACTT+GGG	0.629050	5:+72318341	MsaT029041.1:CDS
AACCACTAAGAAGGTTACTG+TGG	0.654330	5:-72317013	None:intergenic
AACCTCCGAGAGTTGCAACT+AGG	0.628927	5:+72317926	MsaT029041.1:CDS
AACGAAATTGAAGTCCTTAG+GGG	0.693358	5:+72318694	MsaT029041.1:CDS
AATAACCTCGTTAGACCTGT+TGG	0.585903	5:-72318190	None:intergenic
AATATTGATTTCTGCTGTGA+TGG	0.477283	5:+72318369	MsaT029041.1:CDS

Showing 1 to 10 of 172 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	72316603	72318966	72316603	ID=MsaG029041
Chr5	mRNA	72316603	72318966	72316603	ID=MsaT029041.1;Parent=MsaG029041
Chr5	exon	72316603	72318966	72316603	ID=MsaT029041.1.exon1;Parent=MsaT029041.1
Chr5	CDS	72316603	72318966	72316603	ID=cds.MsaT029041.1;Parent=MsaT029041.1

Gene Sequence

>MsaT029041.1

ATGACACATTGGACTTTTATTCCTCCTTTTATCAAATCTACCTGGAATGATTCTGATTCAACTCCTTGCTCATGGGTTGGTGTTCAATGCGACTATAATCATAATGTCATTTCTCTTAAACTCATTAGTCATGGGATTTTTGGTCAACTTGGGAAACAAATTGGAAACCTTCATCACTTGCAGACCCTTGTATTGTTTGGAAATGATTTCTCAGGAAAAATACCTTCAGAGTTAAGCAACTGTAGTTTGCTTGAGTATTTAGACCTTTCTGAGAATAGATTTAGTGGAAAGATACCATATAGTTTGAATAAGTTACAAATTTTACGGTTTATGAGTCTCTCATCCAATCTGCTTATCGGTGAAATTCCAGATTCCTTGTTTAAAATTCCTTCCATTGCAGAAGTGAGCCTCCACAGTAACCTTCTTAGTGGTTCTATCCCGACCAATATTGGAAACTTGACTCGTCTATTGAAGTTGTATCTATATGGTAATCAGTTGTCAGGGACGATTCCTTCATCTCTTGGTAATTGCAGTAAATTAGAGGACCTTGAATTGTCTTTCAACCGATTAAGAGGTGAAATTCCGGTCAGTGTTTGGAGAGTTTCAAGTCTTGTGAACATCTTGGTTCACAACAACAGCCTCTCTGGGGAACTGCCTTTCGAGATGACAAAGCTGAAGTATCTAAAAAATATCTCATTGTTTGATAATCAGTTCTCAGGAGCCATACCTCAAAGCTTGGGAATCAACAGCAGCATAGCGAAGTTAGACTGTATGAATAACAAGTTCAGTGGCAATATCCCACCCAATCTTTGCTTTGGAAAGCATTTGTTAGTGCTAAACATGGGAATGAATCAACTTCAAGGCAGTATACCTTCTGATGTAGGAAGATGTGAAACTCTGATGACGTTGTTTCTCAATGAAAATAATTTCACCGGGTCTCTTCCCGATTTTGAAAGTAATCTTAACCTGGACTACATGGACTTGAGCAAGAACAATATCAGTGGACCAGTTCCATCAAGTTTGGGCAATTGCAAAAATCTCACATACATTAATTTGTCGAGGAACAATTTTGCAGGGCTCATACCGACAGAGTTAGGTAAGCTTGTGAGTTTTGTGATTTTGGATCTTTCTCACAACAACTTGGAAGGTCCATTGCCTCTTCAGCTGTCAAATTGTACTAAAATGGATCGTTTTGATGTGGGATTCAATTTCCTAAATGGAACACTCCCATCAAGTTTGAGAAGTTGGAGAAACATAACCACATTGATTTTAAGAGAAAATTACTTCACTGGAGGTATCCCATGGTTTTTGGCAGAATTTACCAACCTCCGAGAGTTGCAACTAGGTGGAAATTTGCTTGGAGGAAAAATTCCGCGATCGATGGGAACATTGCATAATTTGTTCTATGGATTGAATCTGAGTGCTAATGGATTGACAGGTGGCATTCCTTCAGAAATTGGCTGGCTAGGACTGCTGCAAAGCCTAGATATATCCTTGAACAATTTAACAGGAAGCATAGATGCCCTTGGAGGTCTTTTTTCGTTAATTGAGGTCAATATTTCTTTCAATCTCTTCAATGGATCTGTACCAACAGGTCTAACGAGGTTATTGAATTCCTCACCATCATCATTCATGGGTAATCCTCTCCTATGTGTAACTTGTTTGAATTGCATTAAAACTGGTTATGTATATCCATGTCTCTACAAATCAACTGATCATAAAGGTATAGGTTATGTACAAATTGTAATGATAGAACTTGGGTCTTCAATATTGATTTCTGCTGTGATGGTGATAATATTTCGATTGTATCTTCATAAAAATGAATTGAAAGGAGCCTCTTATCTTAAGCAACAGTCTTTTAATAAAAGTGGAGATGGACCTAGTAATTCCAATGTAGGGACCCCAATAGAAAATGAGCTGTTTAACTATCATGAGCTAGTGTTGGAGGCTACAGAGAACCTAAATGATCGGTATATTATTGGCAGAGGAGCACATGGTATTGTGTACAAAGCCATAATTAATCAACAGGCTTGTGCTGTAAAGAAGTTTGAATTTGGATTGAACAAGCAAAAGTGGCGAAGTATCATGGACAACGAAATTGAAGTCCTTAGGGGCCTTAGGCATCAAAATTTGATCAAATGTTGGAGCCACTGGATTGGAAATGACTATGGTTTAATCATATATAATTTCATTGAAAATGGAAGCCTTTATGAAATTTTGCATGAAATGAAACCCCCACCACCCTTAAGGTGGAGTGTTCGTTTTAATATAGCTGTTGGAATTGCTCAAGGACTAGCTTATCTGCATTATGATTGTGATCCACCAATCTCGCATAGACATCAAACCAAAGAACATACTTGTTGA

Protein sequence

>MsaT029041.1

MTHWTFIPPFIKSTWNDSDSTPCSWVGVQCDYNHNVISLKLISHGIFGQLGKQIGNLHHLQTLVLFGNDFSGKIPSELSNCSLLEYLDLSENRFSGKIPYSLNKLQILRFMSLSSNLLIGEIPDSLFKIPSIAEVSLHSNLLSGSIPTNIGNLTRLLKLYLYGNQLSGTIPSSLGNCSKLEDLELSFNRLRGEIPVSVWRVSSLVNILVHNNSLSGELPFEMTKLKYLKNISLFDNQFSGAIPQSLGINSSIAKLDCMNNKFSGNIPPNLCFGKHLLVLNMGMNQLQGSIPSDVGRCETLMTLFLNENNFTGSLPDFESNLNLDYMDLSKNNISGPVPSSLGNCKNLTYINLSRNNFAGLIPTELGKLVSFVILDLSHNNLEGPLPLQLSNCTKMDRFDVGFNFLNGTLPSSLRSWRNITTLILRENYFTGGIPWFLAEFTNLRELQLGGNLLGGKIPRSMGTLHNLFYGLNLSANGLTGGIPSEIGWLGLLQSLDISLNNLTGSIDALGGLFSLIEVNISFNLFNGSVPTGLTRLLNSSPSSFMGNPLLCVTCLNCIKTGYVYPCLYKSTDHKGIGYVQIVMIELGSSILISAVMVIIFRLYLHKNELKGASYLKQQSFNKSGDGPSNSNVGTPIENELFNYHELVLEATENLNDRYIIGRGAHGIVYKAIINQQACAVKKFEFGLNKQKWRSIMDNEIEVLRGLRHQNLIKCWSHWIGNDYGLIIYNFIENGSLYEILHEMKPPPPLRWSVRFNIAVGIAQGLAYLHYDCDPPISHRHQTKEHTC*