AlfalfaGEDB | MsaG029044

M. sativa ssp. caerulea / MsaG029044

KEGG: -
GO: GO:0001101 GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004888 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009975 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019199 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030054 GO:0033218 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0042221 GO:0042277 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044464 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0052652 GO:0055044 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:0098542 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029044	KEH28333.1	73.824	638	129	8	1	609	327	955	0.0	920
MsaG029044	KEH28333.1	82.751	458	73	2	154	606	972	1428	0.0	788

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029044	sp\|P93194\|RPK1_IPONI	47.162	458	201	9	1	452	667	1089	2.08e-122	391

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029044	tr\|A0A072UGT4\|A0A072UGT4_MEDTR	73.824	638	129	8	1	609	327	955	0.0	920
MsaG029044	tr\|A0A072UGT4\|A0A072UGT4_MEDTR	82.751	458	73	2	154	606	972	1428	0.0	788

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG029044	0.800629	2.204857e-48	3.023777e-46
MsaG000015	MsaG029044	0.822750	3.533938e-53	8.362670e-51
MsaG000030	MsaG029044	0.819041	2.498371e-52	5.357884e-50
MsaG000045	MsaG029044	0.900902	1.062462e-77	5.732710e-74
MsaG000062	MsaG029044	0.833668	8.482817e-56	2.730981e-53
MsaG000070	MsaG029044	0.878542	5.415637e-69	9.138226e-66
MsaG000071	MsaG029044	0.816144	1.116039e-51	2.220973e-49
MsaG000078	MsaG029044	0.812181	8.290163e-51	1.493322e-48
MsaG000083	MsaG029044	0.931548	8.851890e-94	4.092134e-89
MsaG000110	MsaG029044	0.815524	1.532351e-51	3.001644e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029044	MtrunA17_Chr5g0440221	73.824	638	129	8	1	609	527	1155	0.0	919
MsaG029044	MtrunA17_Chr5g0440221	82.751	458	73	2	154	606	1172	1628	0.0	788
MsaG029044	MtrunA17_Chr5g0440191	60.902	532	140	4	1	464	528	1059	0.0	623
MsaG029044	MtrunA17_Chr5g0440191	62.069	58	21	1	545	601	1067	1124	4.26e-13	72.8
MsaG029044	MtrunA17_Chr5g0440211	55.150	602	193	5	1	601	528	1053	0.0	613
MsaG029044	MtrunA17_Chr5g0440231	65.659	463	141	3	2	463	507	952	0.0	585
MsaG029044	MtrunA17_Chr5g0440231	50.000	78	38	1	525	601	941	1018	5.27e-14	75.5
MsaG029044	MtrunA17_Chr2g0334191	50.658	456	184	11	2	451	644	1064	2.62e-124	393
MsaG029044	MtrunA17_Chr1g0197051	47.137	454	200	9	2	452	668	1084	1.53e-113	364
MsaG029044	MtrunA17_Chr7g0258421	55.556	225	69	3	1	221	97	294	1.20e-65	217

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029044	AT1G73080.1	43.617	470	212	13	2	456	677	1108	1.01e-94	315
MsaG029044	AT1G17750.1	39.783	460	225	13	2	452	654	1070	1.19e-83	284
MsaG029044	AT2G26330.1	35.106	470	255	13	10	474	509	933	2.09e-60	217
MsaG029044	AT4G20140.1	33.735	498	246	20	4	453	772	1233	3.05e-57	209
MsaG029044	AT5G62710.2	31.250	480	275	16	1	459	107	552	6.54e-56	199
MsaG029044	AT5G62710.1	31.315	479	276	15	1	459	141	586	7.71e-56	199
MsaG029044	AT3G49670.1	34.549	466	235	20	1	454	553	960	2.40e-55	202
MsaG029044	AT5G44700.1	32.577	485	269	17	2	463	795	1244	3.71e-55	203
MsaG029044	AT5G07180.2	32.805	442	240	14	17	451	426	817	6.58e-55	201
MsaG029044	AT5G65700.1	33.262	469	242	19	1	454	552	964	6.91e-55	201

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Find 122 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATTACAAGTACTATA+TGG	0.412442	5:-72332584	None:intergenic
AAACAACTGACACATATGCG+AGG	0.713955	5:-72329613	None:intergenic
AAACATTGATGTGACTTGCT+TGG	0.552415	5:-72332429	None:intergenic
AAAGCGACATGTGTAAGTGG+AGG	0.660657	5:+72332525	MsaT029044.1:CDS
AAATACGCAGACTACTGGAT+TGG	0.513192	5:+72330117	MsaT029044.1:CDS
AACCTCCACCACTCTTTATG+TGG	0.537656	5:+72330211	MsaT029044.1:CDS
AAGGTAAATCAAACAAGGCT+GGG	0.554119	5:-72332879	None:intergenic
AAGTCTGATGTATACAGCTA+CGG	0.594658	5:+72332230	MsaT029044.1:CDS
AAGTCTTGTTTCATTAATTG+AGG	0.475149	5:+72329501	MsaT029044.1:CDS
AAGTGTTGGTCCAGTGATAG+AGG	0.508783	5:-72332903	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	72329442	72333210	72329442	ID=MsaG029044
Chr5	mRNA	72329442	72333210	72329442	ID=MsaT029044.1;Parent=MsaG029044
Chr5	exon	72329442	72330483	72329442	ID=MsaT029044.1.exon1;Parent=MsaT029044.1
Chr5	CDS	72329442	72330483	72329442	ID=cds.MsaT029044.1;Parent=MsaT029044.1
Chr5	exon	72332201	72332962	72332201	ID=MsaT029044.1.exon2;Parent=MsaT029044.1
Chr5	CDS	72332201	72332962	72332201	ID=cds.MsaT029044.1;Parent=MsaT029044.1
Chr5	exon	72333182	72333210	72333182	ID=MsaT029044.1.exon3;Parent=MsaT029044.1
Chr5	CDS	72333182	72333210	72333182	ID=cds.MsaT029044.1;Parent=MsaT029044.1

Gene Sequence

>MsaT029044.1

ATGCTGCAAAGTCTGGATATATCCTTGAACAATTTGACAGGAAGCATAGACGCACTTGGAAGTCTTGTTTCATTAATTGAGGTCAATATTTCTCACAATCTCTTCAATGGTTCTGTACCTACAGGTCTAATGAAGTTATTGAATTCCTCACCATCATCATTCATGGGTAATCCTCGCATATGTGTCAGTTGTTTAAGTTGCATTAAAACTAGTTATGTAAATCCATGTGTCTCCAAATCAACCAATCACAAAGGTATCAGTAATGTTCAAATTGTGATGATTGAAATAGGATCCTCAATATTGATTTCTGTTGTGCTGGTAATAATAATTCGAAGGCGTTTCCATAGAAAGGAATCAGATACAAAAGATCAAAAGCAATGGTATTATATTCATAGAGGAGCTGGAAGGATTGGAGTTAGATATGCTCACGAATTCAACATCTCAGGTGAAGAGAATCCAACTGCCCTTCAGAAACTAGTGTTGCAGGCTACAGAGAACCTAAGTGATCAATATATTATTGGCAGAGGAGCACATGGTATTGTGTACAAAGCTTTACTTGGTCAACAAGTTTATGCTGTAAAGAAGTTTGAATTCACAAGCAACAGGGAAAAGCGGCTACGTATGATGTGCAATGAAATTGAAGTGCTTGGAATGTACAAGCATCGAAACGTGATCAAATACGCAGACTACTGGATTGGAAAGGACTATGGTTTAGTCTTGTATGAATTCATGAAAAATGGAAGCCTTCATGATATTTTGCATGAGAAGAAACCTCCACCACTCTTTATGTGGAGCGACCGGCTTAAGATTGCTATTGGAATTGCTGAAGGACTGGCATATCTGCATAATGATTGTGACCCACCGATAGTGCACCGAGACATTAAACCAAAAAATATTCTTATTGATGACAATCTGGAGCCAATTATATCTGATTTTGGTACTGTCTTATACAGGAAGTTGTCTGAAGATTCTTATGGTCATTCAGAAACCAGGAAAATGCGTTCAACGATCGTTGTTGGTACCCCTGGCTATATTGCACCAGAAAATGCAAATGCAGCAATGCACAACAGAAAGTCTGATGTATACAGCTACGGAGTTGTTTTGCTCGAGCTAATAACAAGAAAGAAAGCGTTTGGTCCCTATTTTGATGATGAAACAAAGGAGACCAGTTTAGTGTGCTGGGCAAGATCTATATGGCTGGAAACAGGCAAAATCGAGAAGATTGTCGATTCATACCTTGCGAGTTCATTTCCCAATTCAGTGGAACTAACCAAGCAAGTCACATCAATGTTTCTATTGGCATTGCAATGCACAGCGACAGATCTGCGAAAGAGACCGACCATGAAAGATGTTATTGACTTGTATAAAAGCGACATGTGTAAGTGGAGGTGTGTTGATGCATTTGTAGCCAATACAACACTACAACCATATAGTACTTGTAATATTTTCTCTGATGTTCCAGTTGTTAGTATTGACGACCATCTCCATGGAAAAGTTACATTTAATGTGGATACTACTGAACCTCGAGATAATAGTGACTTTGGATTTTGGCAAGATGCGGATCAATTTCCGCTGGGAGTCTATGATTGGGATGATTGGAAACTCATATCTAGACCTGCAGTTGGTATCCATGGACTAGTAATTCAACTAATGGGAAATTGTGAGACACAGGTTAAAACAGTGGTGGTAGCTGCTCTAATTGTTCCAAAAATAACCTATTCCCAGCCTTGTTTGATTTACCTTCCCTCTATCACTGGACCAACACTTACACAACTTTTCAATTGGTTTTTCCTCTCACAGTGGGAACTAGTTATCTACTTAAGTCACAAGTGA

Protein sequence

>MsaT029044.1

MLQSLDISLNNLTGSIDALGSLVSLIEVNISHNLFNGSVPTGLMKLLNSSPSSFMGNPRICVSCLSCIKTSYVNPCVSKSTNHKGISNVQIVMIEIGSSILISVVLVIIIRRRFHRKESDTKDQKQWYYIHRGAGRIGVRYAHEFNISGEENPTALQKLVLQATENLSDQYIIGRGAHGIVYKALLGQQVYAVKKFEFTSNREKRLRMMCNEIEVLGMYKHRNVIKYADYWIGKDYGLVLYEFMKNGSLHDILHEKKPPPLFMWSDRLKIAIGIAEGLAYLHNDCDPPIVHRDIKPKNILIDDNLEPIISDFGTVLYRKLSEDSYGHSETRKMRSTIVVGTPGYIAPENANAAMHNRKSDVYSYGVVLLELITRKKAFGPYFDDETKETSLVCWARSIWLETGKIEKIVDSYLASSFPNSVELTKQVTSMFLLALQCTATDLRKRPTMKDVIDLYKSDMCKWRCVDAFVANTTLQPYSTCNIFSDVPVVSIDDHLHGKVTFNVDTTEPRDNSDFGFWQDADQFPLGVYDWDDWKLISRPAVGIHGLVIQLMGNCETQVKTVVVAALIVPKITYSQPCLIYLPSITGPTLTQLFNWFFLSQWELVIYLSHK*