AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG029145

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG029145 MtrunA17_Chr5g0425591 94.505 91 5 0 1 91 1 91 6.46e-59 179
MsaG029145 MtrunA17_Chr5g0440781 94.118 85 5 0 7 91 10 94 9.79e-54 169
MsaG029145 MtrunA17_Chr5g0440761 94.118 85 5 0 7 91 10 94 2.04e-53 171
MsaG029145 MtrunA17_Chr5g0440761 48.039 102 18 5 95 186 188 264 7.12e-13 65.1
MsaG029145 MtrunA17_Chr5g0441141 94.118 85 5 0 7 91 10 94 2.69e-53 171
MsaG029145 MtrunA17_Chr5g0441141 50.000 110 14 6 98 191 191 275 9.19e-15 70.5
MsaG029145 MtrunA17_Chr5g0441131 77.174 92 21 0 1 92 1 92 4.93e-46 149
MsaG029145 MtrunA17_Chr6g0453751 52.679 112 45 1 10 113 21 132 6.29e-33 114
MsaG029145 MtrunA17_Chr1g0193901 68.132 91 28 1 2 91 4 94 2.87e-31 109
MsaG029145 MtrunA17_Chr1g0193891 68.132 91 28 1 2 91 4 94 2.87e-31 109
MsaG029145 MtrunA17_Chr1g0193871 68.132 91 28 1 2 91 4 94 2.87e-31 109
MsaG029145 MtrunA17_Chr1g0193881 68.132 91 28 1 2 91 4 94 2.87e-31 109
MsaG029145 MtrunA17_Chr3g0099141 55.294 85 37 1 7 91 38 121 1.53e-28 103
MsaG029145 MtrunA17_Chr3g0099131 55.294 85 37 1 7 91 39 122 4.31e-27 107
MsaG029145 MtrunA17_Chr7g0228231 50.549 91 44 1 2 92 7 96 2.02e-26 100
MsaG029145 MtrunA17_Chr1g0154031 54.878 82 36 1 10 91 77 157 3.41e-26 103
MsaG029145 MtrunA17_Chr4g0022881 54.217 83 37 1 9 91 12 93 4.24e-26 100
MsaG029145 MtrunA17_Chr1g0167691 51.220 82 39 1 10 91 13 93 9.69e-26 99.8
MsaG029145 MtrunA17_Chr1g0192411 52.632 95 41 2 1 92 1 94 1.62e-25 101
MsaG029145 MtrunA17_Chr5g0410961 54.217 83 37 1 9 91 12 93 1.74e-25 100
MsaG029145 MtrunA17_Chr1g0187761 51.220 82 39 1 10 91 13 93 3.24e-25 98.2
MsaG029145 MtrunA17_Chr8g0354661 53.659 82 37 1 10 91 38 118 4.89e-25 101
MsaG029145 MtrunA17_Chr3g0103281 50.000 84 41 1 8 91 11 93 6.74e-25 99.0
MsaG029145 MtrunA17_Chr6g0450101 48.352 91 46 1 2 92 7 96 8.06e-25 96.3
MsaG029145 MtrunA17_Chr1g0167661 51.220 82 39 1 10 91 13 93 1.27e-24 96.7
MsaG029145 MtrunA17_Chr7g0274581 50.000 82 40 1 10 91 13 93 2.33e-24 94.7
MsaG029145 MtrunA17_Chr2g0323411 52.439 82 38 1 10 91 13 93 2.70e-24 97.1
MsaG029145 MtrunA17_Chr1g0151941 52.381 84 38 2 9 91 12 94 3.69e-24 95.5
MsaG029145 MtrunA17_Chr4g0048511 51.220 82 39 1 10 91 14 94 1.05e-23 96.3
MsaG029145 MtrunA17_Chr2g0281071 52.439 82 38 1 10 91 14 94 1.28e-23 95.5
MsaG029145 MtrunA17_Chr2g0322521 58.537 82 33 1 10 91 30 110 1.78e-23 95.9
MsaG029145 MtrunA17_Chr4g0037141 50.588 85 41 1 7 91 10 93 2.05e-23 94.0
MsaG029145 MtrunA17_Chr4g0022901 47.368 95 45 2 1 91 1 94 2.23e-23 94.0
MsaG029145 MtrunA17_Chr3g0080861 50.000 82 40 1 10 91 38 118 2.50e-23 96.3
MsaG029145 MtrunA17_Chr2g0327351 53.488 86 38 2 7 91 10 94 3.08e-23 94.4
MsaG029145 MtrunA17_Chr1g0186061 50.000 84 41 1 10 93 21 103 3.59e-23 92.8
MsaG029145 MtrunA17_Chr7g0271241 52.439 82 38 1 10 91 13 93 6.48e-23 94.4
MsaG029145 MtrunA17_Chr7g0261281 47.561 82 42 1 10 91 13 93 7.15e-23 92.4
MsaG029145 MtrunA17_Chr2g0309911 45.455 88 47 1 5 92 7 93 8.26e-23 93.2
MsaG029145 MtrunA17_Chr1g0180391 48.837 86 43 1 7 92 17 101 9.64e-23 91.3
MsaG029145 MtrunA17_Chr3g0115821 48.780 82 41 1 10 91 13 93 1.41e-22 92.8
MsaG029145 MtrunA17_Chr4g0022931 46.316 95 46 2 1 91 1 94 1.55e-22 91.7
MsaG029145 MtrunA17_Chr1g0194951 47.561 82 42 1 10 91 13 93 1.89e-22 92.8
MsaG029145 MtrunA17_Chr4g0039971 48.780 82 41 1 10 91 14 94 1.89e-22 92.4
MsaG029145 MtrunA17_Chr4g0054391 52.326 86 39 2 7 91 10 94 1.89e-22 91.7
MsaG029145 MtrunA17_Chr1g0193371 51.220 82 39 1 10 91 13 93 2.07e-22 92.8
MsaG029145 MtrunA17_Chr2g0323351 48.780 82 41 1 10 91 13 93 2.20e-22 90.9
MsaG029145 MtrunA17_Chr4g0022911 48.780 82 41 1 10 91 14 94 2.26e-22 91.7
MsaG029145 MtrunA17_Chr1g0209661 44.706 85 46 1 8 92 26 109 3.05e-22 91.7
MsaG029145 MtrunA17_Chr4g0032401 50.000 82 40 1 10 91 18 98 3.10e-22 91.7
MsaG029145 MtrunA17_Chr2g0328771 50.000 82 40 1 10 91 21 101 3.38e-22 91.3
MsaG029145 MtrunA17_Chr3g0131121 50.602 83 40 1 9 91 12 93 3.93e-22 90.9
MsaG029145 MtrunA17_Chr5g0417821 47.727 88 45 1 4 91 2 88 4.91e-22 90.5
MsaG029145 MtrunA17_Chr4g0022891 46.988 83 43 1 9 91 12 93 5.24e-22 89.7
MsaG029145 MtrunA17_Chr8g0385321 50.000 84 41 1 9 92 12 94 6.06e-22 90.9
MsaG029145 MtrunA17_Chr2g0330041 46.154 91 48 1 2 92 5 94 6.36e-22 91.7
MsaG029145 MtrunA17_Chr5g0395281 46.067 89 47 1 3 91 6 93 6.40e-22 90.5
MsaG029145 MtrunA17_Chr2g0323321 50.000 74 37 0 10 83 12 85 6.53e-22 85.9
MsaG029145 MtrunA17_Chr1g0203411 44.578 83 45 1 9 91 12 93 6.81e-22 90.1
MsaG029145 MtrunA17_Chr7g0264641 50.000 86 41 2 7 91 10 94 7.63e-22 89.7
MsaG029145 MtrunA17_Chr3g0088461 48.780 82 41 1 10 91 23 103 7.88e-22 90.9
MsaG029145 MtrunA17_Chr8g0349261 48.193 83 41 2 10 91 14 95 8.18e-22 90.1
MsaG029145 MtrunA17_Chr1g0152011 52.326 86 39 2 7 91 10 94 8.36e-22 90.9
MsaG029145 MtrunA17_Chr6g0453471 47.561 82 42 1 10 91 13 93 1.05e-21 90.5
MsaG029145 MtrunA17_Chr5g0397231 44.444 90 49 1 2 91 5 93 1.08e-21 90.5
MsaG029145 MtrunA17_Chr4g0068061 47.561 82 42 1 10 91 13 93 1.27e-21 90.1
MsaG029145 MtrunA17_Chr2g0311221 49.412 85 42 1 7 91 12 95 1.37e-21 90.1
MsaG029145 MtrunA17_Chr7g0217741 47.561 82 42 1 10 91 13 93 1.81e-21 89.4
MsaG029145 MtrunA17_Chr8g0343831 45.455 88 47 1 5 92 4 90 1.89e-21 88.2
MsaG029145 MtrunA17_Chr8g0342541 45.055 91 49 1 2 92 5 94 1.93e-21 89.7
MsaG029145 MtrunA17_Chr4g0072751 50.000 86 41 2 7 91 10 94 2.07e-21 89.7
MsaG029145 MtrunA17_Chr8g0342511 47.561 82 43 0 2 83 5 86 2.20e-21 84.0
MsaG029145 MtrunA17_Chr4g0028311 51.163 86 40 2 7 91 10 94 2.32e-21 89.4
MsaG029145 MtrunA17_Chr6g0453211 44.578 83 45 1 9 91 12 93 2.54e-21 89.0
MsaG029145 MtrunA17_Chr5g0395221 45.679 81 44 0 3 83 6 86 2.55e-21 83.6
MsaG029145 MtrunA17_Chr3g0135311 50.000 86 41 2 7 91 10 94 2.57e-21 89.4
MsaG029145 MtrunA17_Chr5g0400821 51.163 86 40 2 7 91 10 94 2.67e-21 89.0
MsaG029145 MtrunA17_Chr7g0270891 50.000 82 40 1 10 91 13 93 2.72e-21 89.7
MsaG029145 MtrunA17_Chr7g0228891 47.561 82 42 1 10 91 13 93 2.77e-21 88.2
MsaG029145 MtrunA17_Chr1g0194301 46.341 82 43 1 10 91 34 114 2.80e-21 88.2
MsaG029145 MtrunA17_Chr1g0193801 50.000 82 40 1 10 91 13 93 3.04e-21 89.7
MsaG029145 MtrunA17_Chr4g0042671 47.561 82 42 1 10 91 13 93 3.55e-21 89.7
MsaG029145 MtrunA17_Chr1g0168661 46.429 84 44 1 10 93 22 104 4.75e-21 87.4
MsaG029145 MtrunA17_Chr8g0387421 43.333 90 50 1 2 91 5 93 4.90e-21 88.2
MsaG029145 MtrunA17_Chr4g0060721 45.122 82 44 1 10 91 14 94 5.99e-21 88.2
MsaG029145 MtrunA17_Chr4g0055981 44.444 81 44 1 11 91 57 136 7.00e-21 86.3
MsaG029145 MtrunA17_Chr8g0342521 45.055 91 49 1 2 92 5 94 1.26e-20 87.4
MsaG029145 MtrunA17_Chr5g0435101 44.048 84 46 1 8 91 10 92 1.33e-20 85.1
MsaG029145 MtrunA17_Chr3g0110351 48.780 82 41 1 10 91 13 93 1.61e-20 86.7
MsaG029145 MtrunA17_Chr6g0452271 46.512 86 45 1 7 92 10 94 1.62e-20 87.0
MsaG029145 MtrunA17_Chr4g0042611 47.297 74 39 0 10 83 13 86 2.05e-20 81.3
MsaG029145 MtrunA17_Chr5g0434571 48.780 82 41 1 10 91 49 129 2.18e-20 87.0
MsaG029145 MtrunA17_Chr8g0342531 47.561 82 43 0 2 83 5 86 2.57e-20 83.2
MsaG029145 MtrunA17_Chr3g0121241 42.529 87 49 1 5 91 38 123 3.25e-20 85.9
MsaG029145 MtrunA17_Chr8g0346561 45.679 81 43 1 11 91 14 93 3.35e-20 85.9
MsaG029145 MtrunA17_Chr1g0194291 42.857 84 47 1 9 92 21 103 3.79e-20 85.1
MsaG029145 MtrunA17_Chr7g0217221 44.578 83 45 1 9 91 12 93 4.46e-20 85.1
MsaG029145 MtrunA17_Chr4g0057031 46.988 83 43 1 9 91 12 93 5.02e-20 84.7
MsaG029145 MtrunA17_Chr3g0092401 43.373 83 46 1 9 91 13 94 6.52e-20 85.1
MsaG029145 MtrunA17_Chr4g0058631 28.641 206 115 5 10 191 13 210 7.14e-20 85.5
MsaG029145 MtrunA17_Chr2g0294811 47.297 74 39 0 10 83 13 86 9.33e-20 80.5
MsaG029145 MtrunA17_Chr4g0070611 45.679 81 43 1 11 91 14 93 9.75e-20 84.7
MsaG029145 MtrunA17_Chr4g0070641 45.679 81 43 1 11 91 14 93 9.86e-20 82.0
MsaG029145 MtrunA17_Chr3g0117091 47.561 82 42 1 10 91 13 93 9.93e-20 85.1
MsaG029145 MtrunA17_Chr1g0211161 44.444 90 49 1 2 91 6 94 1.06e-19 83.2
MsaG029145 MtrunA17_Chr4g0044421 44.048 84 46 1 8 91 11 93 1.36e-19 82.0
MsaG029145 MtrunA17_Chr8g0360111 42.529 87 49 1 5 91 21 106 1.51e-19 83.6
MsaG029145 MtrunA17_Chr7g0254411 46.341 82 43 1 10 91 13 93 1.58e-19 84.3
MsaG029145 MtrunA17_Chr8g0342461 39.640 111 65 2 2 111 5 114 1.70e-19 80.5
MsaG029145 MtrunA17_Chr7g0275911 41.379 87 50 1 5 91 8 93 2.26e-19 82.8
MsaG029145 MtrunA17_Chr7g0269831 50.000 82 40 1 10 91 13 93 3.38e-19 83.6
MsaG029145 MtrunA17_Chr8g0342471 48.193 83 42 1 2 83 5 87 4.61e-19 79.3
MsaG029145 MtrunA17_Chr8g0342481 43.478 92 50 2 2 92 5 95 4.64e-19 83.6
MsaG029145 MtrunA17_Chr2g0293911 42.391 92 52 1 1 92 16 106 5.72e-19 82.8
MsaG029145 MtrunA17_Chr4g0013361 49.398 83 40 2 10 91 11 92 7.98e-19 82.0
MsaG029145 MtrunA17_Chr5g0401731 47.059 85 43 2 8 92 12 94 1.21e-18 82.0
MsaG029145 MtrunA17_Chr3g0133601 47.059 85 43 2 8 92 34 116 1.21e-18 80.1
MsaG029145 MtrunA17_Chr1g0203441 45.783 83 44 1 10 92 14 95 1.96e-18 80.5
MsaG029145 MtrunA17_Chr6g0487491 41.935 93 46 2 7 91 10 102 2.10e-18 80.5
MsaG029145 MtrunA17_Chr2g0327821 43.529 85 47 1 8 92 5 88 3.08e-18 79.3
MsaG029145 MtrunA17_Chr5g0434931 43.373 83 46 1 9 91 35 116 3.14e-18 80.1
MsaG029145 MtrunA17_Chr6g0454921 47.059 85 43 2 8 92 12 94 3.68e-18 78.6
MsaG029145 MtrunA17_Chr5g0434911 40.659 91 53 1 1 91 13 102 4.74e-18 79.7
MsaG029145 MtrunA17_Chr7g0240821 44.872 78 42 1 14 91 6 82 5.05e-18 78.6
MsaG029145 MtrunA17_Chr4g0068921 43.529 85 47 1 8 92 23 106 5.34e-18 77.8
MsaG029145 MtrunA17_Chr8g0334881 45.238 84 44 2 9 91 10 92 7.08e-18 79.7
MsaG029145 MtrunA17_Chr7g0220341 40.860 93 52 2 1 91 17 108 9.48e-18 79.0
MsaG029145 MtrunA17_Chr6g0470971 45.783 83 44 1 10 92 15 96 9.66e-18 79.0
MsaG029145 MtrunA17_Chr4g0008551 48.193 83 39 3 11 92 38 117 1.09e-17 79.3
MsaG029145 MtrunA17_Chr4g0030881 41.758 91 45 2 9 92 7 96 2.94e-17 77.0
MsaG029145 MtrunA17_Chr7g0228991 42.169 83 47 1 9 91 29 110 3.40e-17 77.4
MsaG029145 MtrunA17_Chr6g0480581 36.893 103 61 3 11 111 4 104 4.46e-17 76.3
MsaG029145 MtrunA17_Chr5g0434841 43.902 82 45 1 10 91 21 101 9.73e-17 76.6
MsaG029145 MtrunA17_Chr4g0053431 45.882 85 44 2 8 92 2 84 1.77e-16 75.1
MsaG029145 MtrunA17_Chr7g0238651 45.783 83 42 2 11 91 7 88 3.78e-16 75.1
MsaG029145 MtrunA17_Chr5g0434831 42.683 82 46 1 10 91 8 88 4.28e-16 72.8
MsaG029145 MtrunA17_Chr6g0460661 39.024 82 48 2 11 92 16 95 4.44e-16 72.0
MsaG029145 MtrunA17_Chr3g0125801 38.938 113 62 4 2 109 4 114 9.73e-16 73.6
MsaG029145 MtrunA17_Chr5g0437321 43.678 87 47 2 6 92 14 98 1.52e-15 72.8
MsaG029145 MtrunA17_Chr5g0397841 43.182 88 48 2 5 92 104 189 3.50e-15 72.8
MsaG029145 MtrunA17_Chr3g0117511 42.683 82 45 2 11 92 183 262 3.59e-15 72.8
MsaG029145 MtrunA17_Chr4g0058991 40.964 83 45 3 11 92 209 288 6.79e-15 72.0
MsaG029145 MtrunA17_Chr5g0429661 42.169 83 44 3 11 92 122 201 2.08e-14 70.5
MsaG029145 MtrunA17_Chr5g0417621 35.849 106 64 3 6 109 129 232 3.05e-14 70.1
MsaG029145 MtrunA17_Chr4g0042501 36.634 101 60 3 11 109 105 203 4.98e-14 69.3
MsaG029145 MtrunA17_Chr7g0247131 50.980 51 24 1 41 91 10 59 6.26e-14 68.2
MsaG029145 MtrunA17_Chr7g0228531 42.683 82 44 3 11 92 220 298 3.92e-13 67.0
MsaG029145 MtrunA17_Chr1g0157731 36.585 82 50 2 11 92 91 170 4.92e-13 67.0
MsaG029145 MtrunA17_Chr1g0157731 36.905 84 52 1 9 92 37 119 1.02e-11 63.2
MsaG029145 MtrunA17_Chr3g0139671 36.585 82 50 2 11 92 85 164 8.13e-13 66.2
MsaG029145 MtrunA17_Chr3g0139671 36.905 84 52 1 9 92 31 113 4.10e-12 64.3
MsaG029145 MtrunA17_Chr7g0254261 43.902 82 44 2 11 92 89 168 1.03e-12 65.5
MsaG029145 MtrunA17_Chr6g0460671 40.244 82 47 2 11 92 99 178 1.38e-12 65.1
MsaG029145 MtrunA17_Chr7g0228401 36.111 108 43 3 8 91 252 357 1.53e-12 65.1
MsaG029145 MtrunA17_Chr7g0238631 36.585 82 50 2 11 92 113 192 1.75e-11 62.0
MsaG029145 MtrunA17_Chr7g0238631 37.349 83 51 1 11 93 61 142 6.62e-11 60.5
MsaG029145 MtrunA17_Chr4g0072451 80.556 36 3 1 4 35 2 37 3.70e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG029145 AT2G32460.1 53.659 82 37 1 10 91 19 99 1.54e-26 105
MsaG029145 AT2G32460.2 53.659 82 37 1 10 91 7 87 1.55e-26 105
MsaG029145 AT2G26960.1 55.556 81 35 1 11 91 22 101 1.89e-26 104
MsaG029145 AT5G55020.1 54.878 82 36 1 10 91 27 107 1.98e-26 105
MsaG029145 AT5G06100.1 54.878 82 36 1 10 91 33 113 1.77e-25 102
MsaG029145 AT5G06100.5 54.878 82 36 1 10 91 33 113 1.94e-25 102
MsaG029145 AT5G06100.2 54.878 82 36 1 10 91 33 113 1.94e-25 102
MsaG029145 AT5G06100.3 54.878 82 36 1 10 91 33 113 1.94e-25 102
MsaG029145 AT5G06100.4 54.878 82 36 1 10 91 33 113 1.94e-25 102
MsaG029145 AT5G56110.1 52.381 84 39 1 8 91 11 93 3.00e-25 100
MsaG029145 AT5G40350.1 50.000 86 42 1 7 92 15 99 3.09e-25 97.8
MsaG029145 AT3G11440.2 54.878 82 36 1 10 91 42 122 4.60e-25 101
MsaG029145 AT3G11440.3 54.878 82 36 1 10 91 42 122 5.82e-25 101
MsaG029145 AT3G11440.4 54.878 82 36 1 10 91 42 122 5.82e-25 101
MsaG029145 AT3G11440.1 54.878 82 36 1 10 91 42 122 5.82e-25 101
MsaG029145 AT3G27810.1 48.864 88 44 1 5 92 16 102 6.09e-25 97.4
MsaG029145 AT4G38620.1 52.941 85 39 1 7 91 10 93 2.34e-24 97.1
MsaG029145 AT3G23250.1 48.780 82 41 1 10 91 13 93 2.52e-24 97.1
MsaG029145 AT4G26930.1 51.220 82 39 1 10 91 20 100 3.86e-24 98.2
MsaG029145 AT5G54230.1 50.602 83 40 1 9 91 12 93 4.80e-24 96.7
MsaG029145 AT3G27920.1 51.807 83 39 1 10 92 15 96 6.66e-24 94.7
MsaG029145 AT4G28110.1 51.807 83 39 1 9 91 12 93 7.23e-24 95.5
MsaG029145 AT4G21440.1 52.439 82 38 1 10 91 13 93 9.23e-24 96.7
MsaG029145 AT4G09460.1 49.412 85 42 1 7 91 10 93 1.16e-23 94.0
MsaG029145 AT3G12720.1 48.810 84 42 1 9 92 22 104 1.27e-23 95.5
MsaG029145 AT5G14750.1 48.936 94 42 2 4 92 6 98 1.30e-23 93.2
MsaG029145 AT3G61250.1 47.561 82 42 1 10 91 13 93 1.30e-23 95.1
MsaG029145 AT1G74080.1 50.602 83 40 1 10 92 13 94 1.52e-23 95.5
MsaG029145 AT1G56160.1 49.398 83 41 1 9 91 14 95 1.56e-23 95.1
MsaG029145 AT1G18570.1 49.398 83 41 1 10 92 14 95 4.16e-23 94.7
MsaG029145 AT5G40330.1 48.193 83 42 1 10 92 13 94 4.57e-23 92.0
MsaG029145 AT3G01530.1 48.837 86 43 1 7 92 23 107 5.01e-23 91.7
MsaG029145 AT1G16490.1 49.398 83 41 1 9 91 14 95 5.77e-23 93.2
MsaG029145 AT3G28470.1 48.837 86 43 1 7 92 10 94 7.50e-23 93.6
MsaG029145 AT4G05100.1 52.439 82 38 1 10 91 14 94 7.74e-23 93.6
MsaG029145 AT1G35515.1 47.059 85 44 1 7 91 10 93 9.19e-23 91.3
MsaG029145 AT5G16770.4 48.780 82 41 1 10 91 13 93 1.01e-22 93.2
MsaG029145 AT5G16770.3 48.780 82 41 1 10 91 13 93 1.01e-22 93.2
MsaG029145 AT5G07700.1 49.398 83 41 1 10 92 13 94 1.13e-22 93.6
MsaG029145 AT5G07700.2 49.398 83 41 1 10 92 13 94 1.13e-22 93.6
MsaG029145 AT5G16770.1 48.780 82 41 1 10 91 13 93 1.43e-22 93.2
MsaG029145 AT5G16770.2 48.780 82 41 1 10 91 13 93 1.43e-22 93.2
MsaG029145 AT3G12820.1 47.059 85 44 1 7 91 12 95 1.52e-22 91.3
MsaG029145 AT5G61420.2 48.193 83 42 1 10 92 13 94 1.71e-22 93.2
MsaG029145 AT5G10280.1 50.000 82 40 1 10 91 13 93 2.00e-22 92.8
MsaG029145 AT1G79180.1 48.193 83 42 1 9 91 14 95 2.05e-22 92.0
MsaG029145 AT2G31180.1 45.783 83 44 1 9 91 12 93 2.13e-22 91.3
MsaG029145 AT5G07690.1 49.398 83 41 1 10 92 13 94 2.15e-22 92.4
MsaG029145 AT1G09540.1 52.439 82 38 1 10 91 13 93 2.89e-22 92.8
MsaG029145 AT1G06180.1 50.000 82 40 1 10 91 13 93 2.94e-22 90.5
MsaG029145 AT1G57560.2 52.439 82 38 1 10 91 13 93 3.21e-22 91.3
MsaG029145 AT5G65230.1 48.315 89 45 1 3 91 6 93 3.54e-22 91.7
MsaG029145 AT5G12870.1 47.778 90 46 1 2 91 11 99 4.32e-22 90.9
MsaG029145 AT3G01140.2 47.059 85 44 1 7 91 10 93 4.49e-22 92.0
MsaG029145 AT4G13480.1 51.190 84 40 1 10 93 7 89 4.69e-22 90.5
MsaG029145 AT3G01140.1 47.059 85 44 1 7 91 53 136 4.81e-22 92.4
MsaG029145 AT1G57560.1 52.439 82 38 1 10 91 13 93 5.25e-22 91.3
MsaG029145 AT3G08500.1 47.561 82 42 1 10 91 31 111 5.90e-22 91.7
MsaG029145 AT3G49690.1 52.326 86 39 2 7 91 10 94 6.05e-22 90.9
MsaG029145 AT5G26660.1 51.220 82 39 1 10 91 13 93 6.78e-22 91.7
MsaG029145 AT3G13890.2 47.619 84 43 1 9 92 12 94 7.58e-22 91.3
MsaG029145 AT1G22640.1 48.235 85 43 1 7 91 10 93 9.68e-22 89.4
MsaG029145 AT4G01680.3 50.000 82 40 1 10 91 13 93 1.01e-21 89.0
MsaG029145 AT3G24310.1 48.810 84 42 1 10 93 19 101 1.11e-21 89.7
MsaG029145 AT5G15310.4 47.561 82 42 1 10 91 13 93 1.23e-21 89.0
MsaG029145 AT5G14340.1 47.561 82 42 1 10 91 25 105 1.28e-21 89.7
MsaG029145 AT2G26950.1 50.000 82 40 1 11 92 18 98 1.29e-21 90.9
MsaG029145 AT5G15310.1 47.561 82 42 1 10 91 13 93 1.29e-21 90.5
MsaG029145 AT5G15310.2 47.561 82 42 1 10 91 13 93 1.47e-21 90.1
MsaG029145 AT1G18710.1 43.373 83 46 1 10 92 13 94 1.57e-21 89.4
MsaG029145 AT2G47190.1 44.186 86 47 1 7 92 18 102 1.66e-21 89.4
MsaG029145 AT4G17785.1 49.398 83 41 1 9 91 13 94 1.85e-21 90.5
MsaG029145 AT4G17785.2 49.398 83 41 1 9 91 13 94 1.95e-21 90.1
MsaG029145 AT4G01680.1 50.000 82 40 1 10 91 13 93 1.97e-21 90.1
MsaG029145 AT1G74650.1 44.048 84 46 1 8 91 11 93 2.69e-21 89.7
MsaG029145 AT3G02940.2 47.561 82 42 1 10 91 13 93 2.80e-21 89.4
MsaG029145 AT5G52600.1 48.193 83 42 1 9 91 12 93 3.00e-21 87.0
MsaG029145 AT1G63910.1 45.556 90 48 1 2 91 5 93 3.03e-21 89.7
MsaG029145 AT5G65790.1 52.326 86 39 2 7 91 10 94 3.40e-21 89.7
MsaG029145 AT1G25340.1 43.023 86 48 1 7 92 16 100 3.53e-21 88.6
MsaG029145 AT5G57620.1 51.163 86 40 2 7 91 10 94 4.26e-21 89.0
MsaG029145 AT4G37780.1 48.810 84 41 2 9 91 12 94 4.56e-21 88.6
MsaG029145 AT3G02940.1 47.561 82 42 1 10 91 13 93 4.94e-21 88.6
MsaG029145 AT3G02940.3 47.561 82 42 1 10 91 13 93 4.94e-21 88.6
MsaG029145 AT1G34670.1 48.780 82 41 1 10 91 13 93 5.00e-21 89.4
MsaG029145 AT1G68320.1 43.529 85 47 1 8 92 18 101 5.03e-21 88.2
MsaG029145 AT5G60890.1 48.810 84 42 1 10 93 13 95 5.05e-21 88.2
MsaG029145 AT2G16720.1 48.148 81 41 1 11 91 14 93 6.58e-21 87.4
MsaG029145 AT3G28910.1 45.783 83 44 1 9 91 12 93 9.72e-21 87.8
MsaG029145 AT2G36890.1 47.674 86 43 2 7 91 10 94 1.25e-20 87.4
MsaG029145 AT1G48000.1 43.529 85 47 1 8 92 31 114 1.28e-20 86.3
MsaG029145 AT2G47460.1 46.341 82 43 1 10 91 13 93 1.54e-20 87.8
MsaG029145 AT1G74430.1 41.667 84 48 1 10 93 13 95 1.62e-20 86.7
MsaG029145 AT2G36890.2 47.674 86 43 2 7 91 51 135 2.24e-20 87.0
MsaG029145 AT3G47600.1 44.578 83 45 1 9 91 12 93 2.58e-20 87.0
MsaG029145 AT1G08810.1 46.341 82 43 1 10 91 13 93 2.86e-20 85.9
MsaG029145 AT4G34990.1 48.193 83 42 1 9 91 12 93 3.00e-20 85.9
MsaG029145 AT3G30210.1 46.988 83 43 1 10 92 28 109 3.76e-20 85.5
MsaG029145 AT5G23000.1 50.000 84 40 2 9 91 12 94 4.15e-20 86.3
MsaG029145 AT3G62610.1 45.122 82 44 1 10 91 13 93 5.79e-20 86.3
MsaG029145 AT5G62470.2 44.578 83 45 1 9 91 12 93 5.81e-20 86.3
MsaG029145 AT3G13540.1 43.902 82 45 1 10 91 24 104 6.18e-20 84.7
MsaG029145 AT5G49330.1 43.902 82 45 1 10 91 13 93 1.08e-19 85.5
MsaG029145 AT5G59780.3 46.988 83 43 1 10 92 9 90 1.19e-19 83.6
MsaG029145 AT5G16600.1 47.561 82 42 1 10 91 13 93 1.88e-19 84.3
MsaG029145 AT1G66230.1 46.341 82 43 1 10 91 13 93 2.46e-19 83.6
MsaG029145 AT3G46130.1 45.783 83 44 1 10 92 10 91 2.96e-19 82.8
MsaG029145 AT3G53200.1 46.988 83 43 1 10 92 10 91 3.24e-19 82.4
MsaG029145 AT3G50060.1 48.837 86 42 2 7 92 2 85 3.37e-19 83.6
MsaG029145 AT3G13890.1 43.011 93 43 2 9 92 12 103 5.60e-19 83.6
MsaG029145 AT5G62470.1 44.578 83 44 2 9 91 12 92 1.08e-18 82.8
MsaG029145 AT4G22680.1 46.988 83 43 1 9 91 12 93 1.29e-18 81.3
MsaG029145 AT5G35550.1 38.889 90 54 1 2 91 7 95 1.98e-18 80.9
MsaG029145 AT3G60460.1 44.706 85 45 2 8 91 10 93 2.74e-18 80.9
MsaG029145 AT4G01680.2 43.617 94 40 2 10 91 13 105 3.02e-18 81.3
MsaG029145 AT4G12350.1 45.783 83 44 1 9 91 12 93 5.25e-18 80.1
MsaG029145 AT4G18770.1 46.341 82 42 2 11 92 217 296 5.90e-18 81.3
MsaG029145 AT5G67300.1 47.674 86 43 2 7 92 2 85 8.75e-18 79.7
MsaG029145 AT5G62320.1 44.944 89 41 2 10 91 14 101 1.32e-17 78.2
MsaG029145 AT3G06490.1 45.882 85 45 1 8 92 18 101 4.09e-17 78.2
MsaG029145 AT1G79180.2 35.345 116 41 2 9 91 14 128 4.11e-17 78.2
MsaG029145 AT4G25560.1 44.578 83 45 1 10 92 11 92 4.86e-17 77.4
MsaG029145 AT2G23290.1 42.857 91 50 2 2 92 4 92 5.28e-17 77.4
MsaG029145 AT1G25340.2 39.535 86 46 2 7 92 16 95 5.38e-17 77.0
MsaG029145 AT1G66380.2 47.761 67 35 0 5 71 4 70 5.78e-17 73.2
MsaG029145 AT4G37260.1 45.122 82 43 2 11 92 13 92 6.39e-17 77.4
MsaG029145 AT1G25340.3 39.535 86 46 2 7 92 16 95 6.52e-17 77.4
MsaG029145 AT4G33450.1 37.255 102 60 3 10 109 18 117 7.63e-17 76.3
MsaG029145 AT5G40360.1 41.053 95 54 2 11 105 158 250 7.84e-17 77.4
MsaG029145 AT1G69560.2 37.963 108 63 3 4 109 116 221 1.39e-16 76.6
MsaG029145 AT1G69560.1 37.963 108 63 3 4 109 100 205 1.57e-16 76.6
MsaG029145 AT3G27785.1 40.449 89 51 2 4 92 182 268 1.78e-16 77.0
MsaG029145 AT5G52260.1 46.988 83 43 1 10 92 13 94 1.79e-16 75.5
MsaG029145 AT5G49620.1 43.529 85 47 1 8 92 25 108 1.91e-16 75.9
MsaG029145 AT3G48920.1 40.909 88 51 1 5 92 14 100 2.20e-16 75.1
MsaG029145 AT1G66380.1 47.761 67 35 0 5 71 4 70 2.35e-16 72.4
MsaG029145 AT5G58850.1 44.318 88 47 2 5 92 99 184 2.93e-16 76.3
MsaG029145 AT1G17950.1 37.624 101 59 3 11 109 5 103 5.44e-16 73.9
MsaG029145 AT1G66370.1 40.244 82 48 1 10 91 9 89 8.70e-16 73.6
MsaG029145 AT1G66390.1 41.379 87 50 1 5 91 4 89 1.80e-15 72.4
MsaG029145 AT3G55730.1 44.578 83 42 3 11 92 56 135 2.18e-15 73.6
MsaG029145 AT1G56650.1 28.333 180 115 5 5 175 4 178 2.29e-15 72.4
MsaG029145 AT5G11050.1 45.783 83 41 3 11 92 105 184 2.46e-15 73.6
MsaG029145 AT2G37630.1 46.988 83 41 2 11 91 4 85 4.00e-15 72.8
MsaG029145 AT5G17800.1 36.641 131 74 5 1 126 80 206 6.14e-15 72.0
MsaG029145 AT5G49620.2 38.776 98 47 1 8 92 25 122 7.24e-15 71.6
MsaG029145 AT1G26780.2 37.624 101 59 3 11 109 98 196 1.01e-14 71.6
MsaG029145 AT1G26780.1 37.624 101 59 3 11 109 98 196 1.47e-14 70.5
MsaG029145 AT3G09230.1 40.000 85 49 2 8 92 52 134 3.08e-14 70.5
MsaG029145 AT1G73410.2 40.196 102 55 4 11 109 6 104 3.59e-14 68.2
MsaG029145 AT1G73410.1 40.196 102 55 4 11 109 6 104 4.19e-14 68.9
MsaG029145 AT2G39880.1 45.122 82 43 2 11 92 50 129 1.42e-13 68.6
MsaG029145 AT3G29020.1 34.259 108 67 3 4 109 58 163 2.01e-13 66.6
MsaG029145 AT3G29020.2 34.259 108 67 3 4 109 60 165 2.70e-13 67.4
MsaG029145 AT4G32730.5 39.024 82 48 2 11 92 87 166 3.81e-13 67.4
MsaG029145 AT4G32730.5 34.066 91 59 1 2 92 26 115 9.95e-12 63.5
MsaG029145 AT4G32730.4 39.024 82 48 2 11 92 87 166 3.81e-13 67.4
MsaG029145 AT4G32730.4 34.066 91 59 1 2 92 26 115 9.95e-12 63.5
MsaG029145 AT4G32730.3 39.024 82 48 2 11 92 87 166 3.81e-13 67.4
MsaG029145 AT4G32730.3 34.066 91 59 1 2 92 26 115 9.95e-12 63.5
MsaG029145 AT4G32730.2 39.024 82 48 2 11 92 87 166 3.81e-13 67.4
MsaG029145 AT4G32730.2 34.066 91 59 1 2 92 26 115 9.95e-12 63.5
MsaG029145 AT4G32730.1 39.024 82 48 2 11 92 87 166 4.14e-13 67.4
MsaG029145 AT4G32730.1 34.066 91 59 1 2 92 26 115 1.06e-11 63.2
MsaG029145 AT3G53200.2 56.863 51 21 1 42 92 9 58 4.14e-13 65.5
MsaG029145 AT5G40350.2 50.943 53 25 1 40 92 3 54 4.73e-13 64.7
MsaG029145 AT5G26660.2 52.000 50 23 1 42 91 14 62 1.69e-12 65.1
MsaG029145 AT5G11510.3 35.366 82 51 2 11 92 81 160 1.82e-12 65.5
MsaG029145 AT5G11510.3 34.066 91 59 1 2 92 20 109 3.51e-12 64.7
MsaG029145 AT5G11510.1 35.366 82 51 2 11 92 81 160 1.82e-12 65.5
MsaG029145 AT5G11510.1 34.066 91 59 1 2 92 20 109 3.51e-12 64.7
MsaG029145 AT5G11510.4 35.366 82 51 2 11 92 81 160 1.82e-12 65.5
MsaG029145 AT5G11510.4 34.066 91 59 1 2 92 20 109 3.51e-12 64.7
MsaG029145 AT5G11510.2 35.366 82 51 2 11 92 81 160 2.04e-12 65.5
MsaG029145 AT5G11510.2 34.066 91 59 1 2 92 20 109 3.82e-12 64.7
MsaG029145 AT5G11510.5 35.366 82 51 2 11 92 81 160 2.05e-12 65.5
MsaG029145 AT5G11510.5 34.066 91 59 1 2 92 20 109 3.76e-12 64.7
MsaG029145 AT3G09370.2 39.759 83 49 1 11 93 83 164 2.66e-12 65.1
MsaG029145 AT3G09370.2 36.471 85 52 2 8 92 132 214 6.20e-12 63.9
MsaG029145 AT3G09370.1 39.759 83 49 1 11 93 78 159 2.97e-12 64.7
MsaG029145 AT3G09370.1 36.471 85 52 2 8 92 127 209 6.74e-12 63.9
MsaG029145 AT3G09370.3 39.759 83 49 1 11 93 91 172 3.02e-12 64.7
MsaG029145 AT3G09370.3 36.471 85 52 2 8 92 140 222 6.35e-12 63.9
MsaG029145 AT5G02320.1 39.759 83 49 1 11 93 75 156 3.58e-12 64.7
MsaG029145 AT5G02320.1 35.366 82 51 2 11 92 127 206 5.38e-11 61.2
MsaG029145 AT5G02320.2 39.759 83 49 1 11 93 75 156 3.58e-12 64.7
MsaG029145 AT5G02320.2 35.366 82 51 2 11 92 127 206 5.38e-11 61.2
MsaG029145 AT5G02320.3 39.759 83 49 1 11 93 15 96 3.95e-12 64.3
MsaG029145 AT5G02320.3 35.366 82 51 2 11 92 67 146 6.10e-11 60.8
MsaG029145 AT3G27810.2 50.980 51 24 1 42 92 4 53 4.04e-12 62.4
MsaG029145 AT3G18100.1 40.964 83 47 2 9 91 544 624 8.75e-12 63.5
MsaG029145 AT3G18100.3 40.964 83 47 2 9 91 496 576 9.62e-12 63.5
MsaG029145 AT3G18100.2 40.964 83 47 2 9 91 331 411 1.22e-11 63.2
MsaG029145 AT3G18100.4 40.964 83 47 2 9 91 383 463 1.43e-11 62.8
MsaG029145 AT3G12820.2 52.083 48 22 1 44 91 1 47 2.54e-11 60.5
MsaG029145 AT3G46130.3 50.943 53 25 1 40 92 8 59 2.65e-11 60.8
MsaG029145 AT5G14750.3 48.980 49 24 1 44 92 17 64 3.90e-11 59.3
MsaG029145 AT5G59780.2 52.941 51 23 1 42 92 20 69 4.84e-11 60.1
MsaG029145 AT3G46130.4 52.941 51 23 1 42 92 20 69 6.62e-11 59.7

Find 38 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATACCTCGTTCCAATTTC+TGG 0.107867 5:-73506711 None:intergenic
TAATATTTCATCTTCTTCTT+TGG 0.201233 5:-73506663 None:intergenic
GATTTCAGGGGTAGCATTAT+TGG 0.227047 5:+73507172 MsaT029145.1:intron
CCTACAACCAGATGTGAAAA+AGG 0.249095 5:+73506790 MsaT029145.1:CDS
ATGTATTGACTTCAGTAATT+TGG 0.259715 5:+73507384 MsaT029145.1:CDS
TCAGTATCATGGTGAATTTA+TGG 0.290945 5:+73507276 MsaT029145.1:CDS
AAAACCATGGAACCAGAAAT+TGG 0.371902 5:+73506699 MsaT029145.1:CDS
AAACCTCCTTGATGACTTCA+TGG 0.396227 5:+73507351 MsaT029145.1:CDS
CGTTCCAATTTCTGGTTCCA+TGG 0.417198 5:-73506703 None:intergenic
TCCTCAAATTCCACCACCTA+TGG 0.442042 5:+73507249 MsaT029145.1:CDS
GGATAGTCACCAAGCATCAT+AGG 0.444307 5:-73507229 None:intergenic
TGGTCTAAGCTGGCTCGATC+AGG 0.455334 5:+73506878 MsaT029145.1:CDS
TGAAATATTAAAAGCATATG+TGG 0.459693 5:+73506676 MsaT029145.1:CDS
TCCATAGGTGGTGGAATTTG+AGG 0.460831 5:-73507250 None:intergenic
AAAAGTATGGTGAATTCAAA+TGG 0.466521 5:+73506858 MsaT029145.1:CDS
TGGAACTTCTCATATACCTA+TGG 0.477216 5:+73507192 MsaT029145.1:CDS
CTTCCTTCACCTATGATGCT+TGG 0.481674 5:+73507220 MsaT029145.1:CDS
GTAAAAGTTGTCGTCTAAGA+TGG 0.497716 5:+73506759 MsaT029145.1:CDS
TATTGACTTCAGTAATTTGG+AGG 0.499792 5:+73507387 MsaT029145.1:CDS
TTGGAGGACGATGTTGAAGC+CGG 0.528092 5:+73507403 MsaT029145.1:CDS
TACTGAGTCTCCATAGGTGG+TGG 0.534844 5:-73507259 None:intergenic
TGAATTCAAATGGTCTAAGC+TGG 0.550324 5:+73506868 MsaT029145.1:CDS
CATCATGTCTTCATCATCAT+CGG 0.567227 5:+73506616 None:intergenic
AGCATCATAGGTGAAGGAAG+TGG 0.575321 5:-73507217 None:intergenic
CCTATGGAGACTCAGTATCA+TGG 0.585538 5:+73507265 MsaT029145.1:CDS
CCATGATACTGAGTCTCCAT+AGG 0.586617 5:-73507265 None:intergenic
GGTGAAGGAAGTGGAGCCAT+AGG 0.590422 5:-73507208 None:intergenic
ATGGATCCATGAAGTCATCA+AGG 0.595005 5:-73507357 None:intergenic
TCACCAAGCATCATAGGTGA+AGG 0.597667 5:-73507223 None:intergenic
CTGAAGTCAATACATAGACA+TGG 0.618549 5:-73507376 None:intergenic
AAAGCATATGTGGAAAACCA+TGG 0.619332 5:+73506686 MsaT029145.1:CDS
TCTAAGCTGGCTCGATCAGG+AGG 0.636811 5:+73506881 MsaT029145.1:CDS
GAGGACGATGTTGAAGCCGG+CGG 0.660817 5:+73507406 MsaT029145.1:CDS
ACTGTCAAATAAACGACCGC+CGG 0.667707 5:-73507422 None:intergenic
TGATACTGAGTCTCCATAGG+TGG 0.687296 5:-73507262 None:intergenic
AATGCGGGGCTTATACGTTG+CGG 0.693414 5:+73506737 MsaT029145.1:CDS
GATCCATGAAGTCATCAAGG+AGG 0.752147 5:-73507354 None:intergenic
TGGAACCAGAAATTGGAACG+AGG 0.771577 5:+73506706 MsaT029145.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 73506620 73507465 73506620 ID=MsaG029145
Chr5 mRNA 73506620 73507465 73506620 ID=MsaT029145.1;Parent=MsaG029145
Chr5 exon 73506620 73506902 73506620 ID=MsaT029145.1.exon1;Parent=MsaT029145.1
Chr5 CDS 73506620 73506902 73506620 ID=cds.MsaT029145.1;Parent=MsaT029145.1
Chr5 exon 73507173 73507465 73507173 ID=MsaT029145.1.exon2;Parent=MsaT029145.1
Chr5 CDS 73507173 73507465 73507173 ID=cds.MsaT029145.1;Parent=MsaT029145.1
Gene Sequence

>MsaT029145.1

ATGTCTTCATCATCATCGGCCGATACTAAAAAAGGAAAATGGTCCAAAGAAGAAGATGAAATATTAAAAGCATATGTGGAAAACCATGGAACCAGAAATTGGAACGAGGTATCAAAAAATGCGGGGCTTATACGTTGCGGTAAAAGTTGTCGTCTAAGATGGTATAATCACCTACAACCAGATGTGAAAAAGGGTCCATTTAGTGAAGAAGAAAAAAGAAAAGTTTTTGAGTTCTATAAAAAGTATGGTGAATTCAAATGGTCTAAGCTGGCTCGATCAGGAGATTTCAGGGGTAGCATTATTGGAACTTCTCATATACCTATGGCTCCACTTCCTTCACCTATGATGCTTGGTGACTATCCTCAAATTCCACCACCTATGGAGACTCAGTATCATGGTGAATTTATGGATCCAGATTTTTGGTTACACAACAGTTCATTAGACAATGACGATGCTGAAGCAAACCTCCTTGATGACTTCATGGATCCATGTCTATGTATTGACTTCAGTAATTTGGAGGACGATGTTGAAGCCGGCGGTCGTTTATTTGACAGTAACTTGCATGACAAGATATAA
Protein sequence

>MsaT029145.1

MSSSSSADTKKGKWSKEEDEILKAYVENHGTRNWNEVSKNAGLIRCGKSCRLRWYNHLQPDVKKGPFSEEEKRKVFEFYKKYGEFKWSKLARSGDFRGSIIGTSHIPMAPLPSPMMLGDYPQIPPPMETQYHGEFMDPDFWLHNSSLDNDDAEANLLDDFMDPCLCIDFSNLEDDVEAGGRLFDSNLHDKI*