AlfalfaGEDB | MsaG029162

M. sativa ssp. caerulea / MsaG029162

KEGG: K21752
GO: -
PFAM: PF00808.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029162	XP_013454332.1	81.379	290	31	4	1	267	1	290	2.94e-131	384

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029162	sp\|Q14919\|NC2A_HUMAN	43.125	160	69	3	2	161	5	142	3.58e-33	123

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029162	tr\|A0A072UGZ0\|A0A072UGZ0_MEDTR	81.379	290	31	4	1	267	1	290	1.40e-131	384

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TFs/TRs:

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Gene ID	Type	Classification
MsaG029162	TF	NF-YC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG029162	0.834620	4.908463e-56	1.625612e-53
MsaG000219	MsaG029162	0.845486	7.397866e-59	3.444453e-56
MsaG000315	MsaG029162	0.856090	7.889741e-62	5.302858e-59
MsaG000545	MsaG029162	0.858246	1.834793e-62	1.335302e-59
MsaG000566	MsaG029162	0.916990	2.299129e-85	3.488825e-81
MsaG000705	MsaG029162	0.808509	5.093813e-50	8.391694e-48
MsaG000761	MsaG029162	0.812569	6.825692e-51	1.241481e-48
MsaG000910	MsaG029162	0.800229	2.656805e-48	3.610727e-46
MsaG001045	MsaG029162	0.830174	6.125226e-55	1.781554e-52
MsaG001285	MsaG029162	0.827558	2.613602e-54	7.059426e-52

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029162	MtrunA17_Chr5g0441241	80.220	273	31	4	18	267	1	273	2.38e-122	350
MsaG029162	MtrunA17_Chr3g0081161	45.270	296	118	7	1	268	1	280	1.78e-69	216
MsaG029162	MtrunA17_Chr8g0354151	48.299	294	126	7	1	268	1	294	9.98e-69	215

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029162	AT3G12480.1	69.466	131	34	1	1	125	1	131	3.63e-59	190
MsaG029162	AT5G19490.1	76.364	110	24	1	1	110	1	108	6.89e-56	181

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Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTAGCCAACTTAAGTAAA+AGG	0.241392	5:+73811513	MsaT029162.1:CDS
AAGGCGGTAGGGGTAGAGGC+AGG	0.420263	5:+73811080	MsaT029162.1:CDS
AATTTCAGAAGAGAAGATTG+AGG	0.553548	5:+73811436	MsaT029162.1:CDS
ACACCAACTCCTATCCCATC+CGG	0.568917	5:+73811374	MsaT029162.1:CDS
ACATGCATACCAGTGGAAGG+CGG	0.727596	5:+73811064	MsaT029162.1:CDS
ACCAAGCTGTCACTAAGAGG+AGG	0.677608	5:+73810397	MsaT029162.1:CDS
ACCTCCTCTTAGTGACAGCT+TGG	0.548550	5:-73810398	None:intergenic
ACGACCAAGCTGTCACTAAG+AGG	0.580960	5:+73810394	MsaT029162.1:CDS
ACTTAAGTTGGCTAGTTGTA+AGG	0.372538	5:-73811507	None:intergenic
ACTTCCTCAGGTTCTTTGAC+TGG	0.454445	5:-73811253	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	73807704	73811574	73807704	ID=MsaG029162
Chr5	mRNA	73807704	73811574	73807704	ID=MsaT029162.1;Parent=MsaG029162
Chr5	exon	73807704	73807736	73807704	ID=MsaT029162.1.exon1;Parent=MsaT029162.1
Chr5	CDS	73807704	73807736	73807704	ID=cds.MsaT029162.1;Parent=MsaT029162.1
Chr5	exon	73809071	73809143	73809071	ID=MsaT029162.1.exon2;Parent=MsaT029162.1
Chr5	CDS	73809071	73809143	73809071	ID=cds.MsaT029162.1;Parent=MsaT029162.1
Chr5	exon	73809270	73809363	73809270	ID=MsaT029162.1.exon3;Parent=MsaT029162.1
Chr5	CDS	73809270	73809363	73809270	ID=cds.MsaT029162.1;Parent=MsaT029162.1
Chr5	exon	73810302	73810418	73810302	ID=MsaT029162.1.exon4;Parent=MsaT029162.1
Chr5	CDS	73810302	73810418	73810302	ID=cds.MsaT029162.1;Parent=MsaT029162.1
Chr5	exon	73810500	73810549	73810500	ID=MsaT029162.1.exon5;Parent=MsaT029162.1
Chr5	CDS	73810500	73810549	73810500	ID=cds.MsaT029162.1;Parent=MsaT029162.1
Chr5	exon	73811059	73811273	73811059	ID=MsaT029162.1.exon6;Parent=MsaT029162.1
Chr5	CDS	73811059	73811273	73811059	ID=cds.MsaT029162.1;Parent=MsaT029162.1
Chr5	exon	73811317	73811574	73811317	ID=MsaT029162.1.exon7;Parent=MsaT029162.1
Chr5	CDS	73811317	73811574	73811317	ID=cds.MsaT029162.1;Parent=MsaT029162.1

Gene Sequence

>MsaT029162.1

ATGAGGAAGAAACTAGATACTCGTTTCCCTGCTGCTAGGATTAAGAAAATTATGCAAGCTGATGAAGATATAGGGAAGATTGCATTGGCCGTGCCTCTTCTAGTTTCAAAAGCACTAGAGCTATTTCTGCAAGATTTGTGTGATAGAACATACGAGATAACACTTAGGAGGGGAGCAAAGACCGTGAATGCTTTTCATTTAAAACAGTGCATACAAACTTGTAATGTCTTTGATTTTCTGAAAGATACTGTGAGCAAAGTTCCTGATTTAGGCGGTTCTGCTGCAACTGGTGACGACCAAGCTGTCACTAAGAGGAGGAAAGTTTTTGAAGATGACGATGATGACAGCGATGAGGAGACCAAGAGAACGAGAACATGCATACCAGTGGAAGGCGGTAGGGGTAGAGGCAGGGGACGTGGCCGCGGCCAAGGAAGTAAAACTGTAGATCAAGAGATCAATTCACATGTCAAGTTTGAAGAAGATTGTGAAGCATTGAAGCAAAACGGCAACCACACTCAAAATAATGTAAGCCCAGAAATCGAGGAAGTTAAGCTGAGTTCACCAGTCAAAGAACCTGAGGAATTCAAATTTCGATTTAAATCTGAATCGGATCCGGATGACGACATGGATGAAATATCCACACCAACTCCTATCCCATCCGGTTCATCTTCAAAATCAGTTTCAGAAGAGAAGATAAAATCAATTTCAGAAGAGAAGATTGAGGAATACCCTGGATGGTCCTTTTCTGATATGGAAAAAATGGCTATTGATCCCTTACAACTAGCCAACTTAAGTAAAAGGATTGATGAAGATATGGAAGATTATGATGAAGAAGTGTAG

Protein sequence

>MsaT029162.1

MRKKLDTRFPAARIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLRRGAKTVNAFHLKQCIQTCNVFDFLKDTVSKVPDLGGSAATGDDQAVTKRRKVFEDDDDDSDEETKRTRTCIPVEGGRGRGRGRGRGQGSKTVDQEINSHVKFEEDCEALKQNGNHTQNNVSPEIEEVKLSSPVKEPEEFKFRFKSESDPDDDMDEISTPTPIPSGSSSKSVSEEKIKSISEEKIEEYPGWSFSDMEKMAIDPLQLANLSKRIDEDMEDYDEEV*