AlfalfaGEDB | MsaG029181

M. sativa ssp. caerulea / MsaG029181

KEGG: K09419
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0008356 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00447.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029181	XP_003617219.1	98.425	254	4	0	1	254	1	254	0.0	523

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029181	sp\|Q9C635\|HSFB4_ARATH	61.364	220	53	5	20	211	29	244	1.44e-86	264

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029181	tr\|G7KCV7\|G7KCV7_MEDTR	98.425	254	4	0	1	254	1	254	0.0	523

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TFs/TRs:

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Gene ID	Type	Classification
MsaG029181	TF	HSF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029181	MtrunA17_Chr5g0441531	98.425	254	4	0	1	254	1	254	0.0	523
MsaG029181	MtrunA17_Chr3g0134031	47.941	340	83	11	1	250	1	336	5.25e-93	278
MsaG029181	MtrunA17_Chr5g0397881	44.934	227	97	4	15	215	14	238	1.32e-57	187
MsaG029181	MtrunA17_Chr1g0203601	41.129	248	121	5	17	246	10	250	5.78e-56	181
MsaG029181	MtrunA17_Chr7g0257331	45.274	201	100	2	18	218	15	205	4.01e-54	174
MsaG029181	MtrunA17_Chr4g0004151	96.386	83	3	0	172	254	1	83	2.08e-53	167
MsaG029181	MtrunA17_Chr6g0472421	39.338	272	118	6	16	249	24	286	3.70e-52	172
MsaG029181	MtrunA17_Chr5g0402291	38.367	245	121	6	18	242	2	236	3.70e-48	160
MsaG029181	MtrunA17_Chr8g0375041	38.000	250	121	6	18	254	2	230	2.87e-46	155
MsaG029181	MtrunA17_Chr5g0410881	46.597	191	90	2	22	212	29	207	4.09e-45	158

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029181	AT1G46264.1	61.364	220	53	5	20	211	29	244	1.46e-87	264
MsaG029181	AT4G36990.1	39.286	252	133	4	12	247	1	248	9.00e-54	175
MsaG029181	AT5G62020.1	40.000	250	131	4	18	249	16	264	2.49e-52	172
MsaG029181	AT4G11660.1	71.845	103	29	0	17	119	51	153	2.14e-50	169
MsaG029181	AT1G32330.2	46.196	184	87	3	22	204	34	206	5.32e-45	157
MsaG029181	AT1G32330.1	46.196	184	87	3	22	204	34	206	6.20e-45	157
MsaG029181	AT2G41690.1	43.094	181	93	3	23	194	38	217	9.19e-44	148
MsaG029181	AT4G17750.1	64.486	107	38	0	15	121	42	148	1.51e-43	154
MsaG029181	AT3G22830.1	66.327	98	33	0	20	117	56	153	4.10e-40	143
MsaG029181	AT3G02990.1	66.667	96	31	1	21	116	20	114	3.45e-39	142

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Find 37 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTACATTTGTTGTTTGG+AGG	0.447885	5:-74164052	MsaT029181.1:CDS
AACCAGATGAAAGTATATGC+TGG	0.518742	5:-74163296	MsaT029181.1:CDS
AAGATATCAGTGTTTGATTT+AGG	0.203557	5:+74163252	None:intergenic
ACAACTTCTCAAGCTTTGTT+AGG	0.420026	5:-74163983	MsaT029181.1:CDS
AGAAGATCTCTAGCAAATTC+AGG	0.373696	5:+74164026	None:intergenic
AGAAGGTTGTTGCTGATAGG+TGG	0.520569	5:-74163437	MsaT029181.1:CDS
AGAGAGGTGTGAAGATAACA+TGG	0.644284	5:-74164183	MsaT029181.1:CDS
AGATAACATGGTGTTCACTA+TGG	0.459097	5:-74164171	MsaT029181.1:CDS
AGATCTCTAGCAAATTCAGG+AGG	0.698266	5:+74164029	None:intergenic
AGCTCTTCTGTGAAGCTCTT+TGG	0.317364	5:-74163003	MsaT029181.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	74162954	74164219	74162954	ID=MsaG029181
Chr5	mRNA	74162954	74164219	74162954	ID=MsaT029181.1;Parent=MsaG029181
Chr5	exon	74162954	74163466	74162954	ID=MsaT029181.1.exon2;Parent=MsaT029181.1
Chr5	CDS	74162954	74163466	74162954	ID=cds.MsaT029181.1;Parent=MsaT029181.1
Chr5	exon	74163968	74164219	74163968	ID=MsaT029181.1.exon1;Parent=MsaT029181.1
Chr5	CDS	74163968	74164219	74163968	ID=cds.MsaT029181.1;Parent=MsaT029181.1

Gene Sequence

>MsaT029181.1

ATGGCTTTCACATTAGAGAGGTGTGAAGATAACATGGTGTTCACTATGGAGTCTCAGAAATCAGTGCCTGCTCCTTTCTTGACAAAGACATACCAACTTGTTGATGATCCTCTCACTGACCACATTGTATCTTGGAGTGATGATGAAACTACATTTGTTGTTTGGAGGCCTCCTGAATTTGCTAGAGATCTTCTTCCCAATTTTTTCAAGCACAACAACTTCTCAAGCTTTGTTAGGCAACTAAATACATATGGTTTCAAGAAGGTTGTTGCTGATAGGTGGGAGTTTGCAAATGATTACTTCAAAAAAGGAGCTAAGCATCTATTATGTGAAATCCACAGGAGAAAAACCCCTCAACACTATCAACAACAATACTATGAACAATCACCACAAATTTTTCAACCAGATGAAAGTATATGCTGGATTGATTCTCCATTACTATCTCCTAAATCAAACACTGATATCTTAACAGCACTTTCTGAGGATAATCAAAGACTAAGGAGAAAGAATTTCATGCTGTTATCAGAACTCAGTCACATGAAGAATCTTTACAATGATATTATATATTTCATTCAAAACCATGTGAGTCCTGCTTCACCCTTTGAACAAAGAAGCAACAATAGTGCTGCTATTTTGAAGCTTATTGAATTGGATTCTGCATCACCTCAATTACCAAATGATAAAGATTGTAATAGCTCTTCTGTGAAGCTCTTTGGTGTTCCTCTTTGTGGAAAAAAGAGGGTTCATCCTAGTAATCTTGATTAA

Protein sequence

>MsaT029181.1

MAFTLERCEDNMVFTMESQKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANDYFKKGAKHLLCEIHRRKTPQHYQQQYYEQSPQIFQPDESICWIDSPLLSPKSNTDILTALSEDNQRLRRKNFMLLSELSHMKNLYNDIIYFIQNHVSPASPFEQRSNNSAAILKLIELDSASPQLPNDKDCNSSSVKLFGVPLCGKKRVHPSNLD*