Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG029220 | XP_024640860.1 | 95.714 | 350 | 7 | 4 | 140 | 489 | 1 | 342 | 0.0 | 682 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG029220 | sp|Q94CK9|LRP1_ARATH | 48.235 | 340 | 123 | 12 | 142 | 468 | 9 | 308 | 4.10e-78 | 249 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG029220 | tr|A0A396I084|A0A396I084_MEDTR | 95.714 | 350 | 7 | 4 | 140 | 489 | 1 | 342 | 0.0 | 682 |
Gene ID | Type | Classification |
---|---|---|
MsaG029220 | TF | SRS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG001178 | MsaG029220 | 0.823820 | 1.993956e-53 | 4.857140e-51 |
MsaG001179 | MsaG029220 | 0.800245 | 2.637004e-48 | 3.585077e-46 |
MsaG003083 | MsaG029220 | 0.812129 | 8.507836e-51 | 1.530537e-48 |
MsaG003276 | MsaG029220 | 0.801945 | 1.189018e-48 | 1.679942e-46 |
MsaG003867 | MsaG029220 | 0.805377 | 2.324893e-49 | 3.555672e-47 |
MsaG010095 | MsaG029220 | 0.858073 | 2.065175e-62 | 1.493198e-59 |
MsaG013646 | MsaG029220 | 0.803363 | 6.080334e-49 | 8.875095e-47 |
MsaG016724 | MsaG029220 | 0.808113 | 6.182359e-50 | 1.008835e-47 |
MsaG020314 | MsaG029220 | 0.801737 | 1.311456e-48 | 1.844186e-46 |
MsaG021016 | MsaG029220 | 0.816403 | 9.771530e-52 | 1.957411e-49 |
MsaG021405 | MsaG029220 | 0.826230 | 5.409764e-54 | 1.407944e-51 |
MsaG021575 | MsaG029220 | 0.803599 | 5.436910e-49 | 7.979146e-47 |
MsaG021896 | MsaG029220 | 0.808165 | 6.026439e-50 | 9.846365e-48 |
MsaG029220 | MsaG030928 | 0.803889 | 4.736310e-49 | 6.997800e-47 |
MsaG029220 | MsaG033370 | 0.803515 | 5.657320e-49 | 8.286669e-47 |
MsaG029220 | MsaG034287 | 0.800409 | 2.442386e-48 | 3.332995e-46 |
MsaG029220 | MsaG034288 | 0.800629 | 2.204662e-48 | 3.023551e-46 |
MsaG029220 | MsaG035270 | 0.807607 | 7.911812e-50 | 1.275400e-47 |
MsaG029220 | MsaG039723 | 0.817017 | 7.128163e-52 | 1.450671e-49 |
MsaG029220 | MsaG039737 | 0.840162 | 1.897559e-57 | 7.445227e-55 |
MsaG029220 | MsaG039739 | 0.813793 | 3.688460e-51 | 6.917214e-49 |
MsaG029220 | MsaG040077 | 0.837426 | 9.599080e-57 | 3.459382e-54 |
MsaG029220 | MsaG040384 | 0.838663 | 4.630679e-57 | 1.733713e-54 |
MsaG029220 | MsaG040775 | 0.807920 | 6.792305e-50 | 1.103274e-47 |
MsaG029220 | MsaG040985 | 0.801788 | 1.280460e-48 | 1.802659e-46 |
MsaG029220 | MsaG041513 | 0.834037 | 6.862287e-56 | 2.233327e-53 |
MsaG029220 | MsaG043665 | 0.847553 | 2.031173e-59 | 1.013294e-56 |
MsaG029220 | MsaG044354 | 0.823590 | 2.254863e-53 | 5.458725e-51 |
MsaG029220 | MsaG045125 | 0.801723 | 1.319771e-48 | 1.855291e-46 |
MsaG029220 | MsaG045278 | 0.804665 | 3.269810e-49 | 4.918756e-47 |
MsaG029220 | MsaG045339 | 0.809655 | 2.902818e-50 | 4.916088e-48 |
MsaG029220 | MsaG045423 | 0.815822 | 1.315623e-51 | 2.596736e-49 |
MsaG029220 | MsaG045446 | 0.815044 | 1.956242e-51 | 3.785737e-49 |
MsaG029220 | MsaG008770 | 0.812524 | 6.981725e-51 | 1.268439e-48 |
MsaG029220 | MsaG027786 | 0.804712 | 3.197426e-49 | 4.815086e-47 |
MsaG029220 | MsaG032708 | 0.819172 | 2.334168e-52 | 5.022966e-50 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG029220 | MtrunA17_Chr5g0441921 | 95.714 | 350 | 7 | 4 | 140 | 489 | 1 | 342 | 0.0 | 682 |
MsaG029220 | MtrunA17_Chr3g0082511 | 42.813 | 327 | 144 | 11 | 154 | 473 | 39 | 329 | 2.82e-67 | 219 |
MsaG029220 | MtrunA17_Chr8g0353111 | 38.272 | 324 | 159 | 10 | 139 | 445 | 8 | 307 | 3.50e-61 | 203 |
MsaG029220 | MtrunA17_Chr8g0372461 | 45.745 | 188 | 70 | 5 | 239 | 423 | 94 | 252 | 5.74e-43 | 155 |
MsaG029220 | MtrunA17_Chr5g0404781 | 51.829 | 164 | 70 | 4 | 262 | 421 | 93 | 251 | 3.51e-40 | 147 |
MsaG029220 | MtrunA17_Chr1g0155791 | 44.444 | 162 | 83 | 3 | 269 | 430 | 122 | 276 | 1.65e-37 | 140 |
MsaG029220 | MtrunA17_Chr3g0142171 | 41.899 | 179 | 86 | 4 | 265 | 441 | 82 | 244 | 6.91e-34 | 129 |
MsaG029220 | MtrunA17_Chr4g0035591 | 39.216 | 153 | 61 | 3 | 269 | 421 | 20 | 140 | 1.59e-28 | 112 |
MsaG029220 | MtrunA17_Chr0c01g0489181 | 62.857 | 35 | 13 | 0 | 269 | 303 | 67 | 101 | 2.08e-13 | 66.6 |
MsaG029220 | MtrunA17_Chr2g0281741 | 62.857 | 35 | 13 | 0 | 269 | 303 | 150 | 184 | 4.19e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG029220 | AT5G12330.4 | 47.806 | 433 | 151 | 18 | 68 | 468 | 6 | 395 | 8.36e-95 | 293 |
MsaG029220 | AT5G12330.1 | 48.235 | 340 | 123 | 12 | 142 | 468 | 9 | 308 | 4.17e-79 | 249 |
MsaG029220 | AT5G12330.2 | 48.235 | 340 | 123 | 12 | 142 | 468 | 9 | 308 | 4.17e-79 | 249 |
MsaG029220 | AT5G66350.3 | 50.000 | 158 | 65 | 3 | 269 | 425 | 120 | 264 | 1.59e-43 | 157 |
MsaG029220 | AT5G66350.1 | 50.000 | 158 | 65 | 3 | 269 | 425 | 120 | 264 | 1.78e-43 | 157 |
MsaG029220 | AT5G66350.2 | 50.000 | 158 | 65 | 3 | 269 | 425 | 120 | 264 | 2.30e-43 | 156 |
MsaG029220 | AT1G75520.1 | 44.737 | 190 | 80 | 7 | 250 | 426 | 110 | 287 | 3.78e-42 | 153 |
MsaG029220 | AT3G51060.1 | 40.948 | 232 | 98 | 7 | 202 | 419 | 76 | 282 | 9.31e-41 | 150 |
MsaG029220 | AT1G19790.2 | 37.786 | 262 | 106 | 8 | 211 | 421 | 14 | 269 | 1.01e-40 | 149 |
MsaG029220 | AT1G19790.1 | 37.786 | 262 | 106 | 8 | 211 | 421 | 14 | 269 | 1.01e-40 | 149 |
MsaG029220 | AT4G36260.1 | 41.423 | 239 | 103 | 6 | 193 | 423 | 37 | 246 | 2.56e-40 | 148 |
MsaG029220 | AT2G18120.2 | 41.989 | 181 | 83 | 2 | 247 | 427 | 50 | 208 | 7.19e-38 | 138 |
MsaG029220 | AT2G18120.1 | 41.989 | 181 | 85 | 2 | 247 | 427 | 50 | 210 | 1.78e-37 | 137 |
MsaG029220 | AT3G54430.1 | 42.353 | 170 | 73 | 3 | 265 | 433 | 37 | 182 | 1.03e-36 | 134 |
MsaG029220 | AT2G21400.2 | 40.881 | 159 | 71 | 2 | 269 | 427 | 10 | 145 | 3.29e-34 | 127 |
MsaG029220 | AT2G21400.4 | 40.994 | 161 | 68 | 3 | 269 | 427 | 9 | 144 | 4.01e-34 | 127 |
MsaG029220 | AT2G21400.3 | 40.000 | 160 | 56 | 2 | 269 | 427 | 10 | 130 | 5.22e-33 | 124 |
MsaG029220 | AT2G21400.1 | 40.000 | 160 | 56 | 2 | 269 | 427 | 9 | 129 | 5.62e-33 | 124 |
MsaG029220 | AT5G12330.3 | 44.068 | 236 | 92 | 9 | 142 | 367 | 9 | 214 | 4.53e-32 | 122 |
MsaG029220 | AT5G33210.2 | 72.222 | 54 | 15 | 0 | 267 | 320 | 15 | 68 | 5.38e-21 | 88.2 |
MsaG029220 | AT5G33210.1 | 72.222 | 54 | 15 | 0 | 267 | 320 | 50 | 103 | 1.33e-20 | 89.4 |
Find 127 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAATACAAGTCCAACAAATT+TGG | 0.195666 | 5:-74591672 | MsaT029220.1:CDS |
TACTACTACTACTGTCAATT+TGG | 0.208653 | 5:+74592487 | None:intergenic |
CATGGTACTGGTGGGTTAAC+TGG | 0.215140 | 5:-74591647 | MsaT029220.1:CDS |
TCATCTAGGTCCATTAATTA+TGG | 0.227585 | 5:-74592007 | MsaT029220.1:CDS |
AACCTTTCTGAACTTCATTT+AGG | 0.241697 | 5:-74590520 | MsaT029220.1:CDS |
AGGAGATTGCCTTCAGATTC+AGG | 0.251476 | 5:-74592172 | MsaT029220.1:CDS |
GGTGGAAGCTCCGGCGTTTC+CGG | 0.252237 | 5:+74592054 | None:intergenic |
GGTTCTAGTGGTTCAACTTC+TGG | 0.271027 | 5:-74591416 | MsaT029220.1:CDS |
CCGCCACCGCTCTCGGTGTC+GGG | 0.292941 | 5:-74591877 | MsaT029220.1:CDS |
TTACTTGGAGGTTCAGCTTA+TGG | 0.298507 | 5:-74590376 | MsaT029220.1:CDS |
ACCAACAAGGAATTCAGTTT+TGG | 0.307252 | 5:-74591790 | MsaT029220.1:CDS |
TACTACAATCTTTCTTTGCT+TGG | 0.312295 | 5:+74591573 | None:intergenic |
TGATCATGGTGTTGAGAATA+GGG | 0.324275 | 5:-74590554 | MsaT029220.1:CDS |
CATCTCAGGTCCATAATTAA+TGG | 0.328906 | 5:+74591997 | None:intergenic |
AAACCGAGTGAAAGATCTTC+TGG | 0.334650 | 5:+74592094 | None:intergenic |
AGCTCCGGCGTTTCCGGCGG+TGG | 0.340870 | 5:+74592060 | None:intergenic |
ACTGGTGGGTTAACTGGTTC+TGG | 0.343369 | 5:-74591641 | MsaT029220.1:CDS |
GCTTCTGCTGCTGTTGCTGT+TGG | 0.363663 | 5:+74592449 | None:intergenic |
GCCAAAACTGAATTCCTTGT+TGG | 0.364262 | 5:+74591789 | None:intergenic |
AGTGGTGGTGGAGGGTTACT+TGG | 0.368806 | 5:-74590391 | MsaT029220.1:CDS |
ATGATCATGGTGTTGAGAAT+AGG | 0.379627 | 5:-74590555 | MsaT029220.1:CDS |
CTACTCATGTTAAGAGTACT+TGG | 0.387799 | 5:-74591505 | MsaT029220.1:CDS |
AGAAAGATTGTAGTAATAGA+AGG | 0.391384 | 5:-74591565 | MsaT029220.1:CDS |
CATTTAGGTGGTGGTGGTGG+TGG | 0.391759 | 5:-74590505 | MsaT029220.1:CDS |
AGTCCAACAAATTTGGTTCA+TGG | 0.393800 | 5:-74591665 | MsaT029220.1:CDS |
TGAGAATTAACAAACCTTGA+TGG | 0.401434 | 5:+74591300 | None:intergenic |
GCGACAACGACGGTGGTTGC+TGG | 0.403885 | 5:-74591443 | MsaT029220.1:CDS |
CCCGACACCGAGAGCGGTGG+CGG | 0.404701 | 5:+74591877 | None:intergenic |
GAGGTAGTATCAAAGCTTCT+AGG | 0.414831 | 5:+74591326 | None:intergenic |
CTTAACCCCGCCACCGCTCT+CGG | 0.417771 | 5:-74591884 | MsaT029220.1:CDS |
GTACCATGAACCAAATTTGT+TGG | 0.418091 | 5:+74591662 | None:intergenic |
CCCGCCACCGCTCTCGGTGT+CGG | 0.421375 | 5:-74591878 | MsaT029220.1:CDS |
CTTTCACTCGGTTTCAATGC+GGG | 0.422098 | 5:-74592085 | MsaT029220.1:CDS |
ACAAATTTGGTTCATGGTAC+TGG | 0.423871 | 5:-74591659 | MsaT029220.1:CDS |
GGTGGTGGTGGTAATAATAA+TGG | 0.432992 | 5:-74590490 | MsaT029220.1:CDS |
GGTGGGTCCGGTGGAAGCTC+CGG | 0.434590 | 5:+74592045 | None:intergenic |
TTCAATGCGGGTCCCACCGC+CGG | 0.436323 | 5:-74592073 | MsaT029220.1:CDS |
GCAGCTTCAAGTGGTGGTGG+AGG | 0.442810 | 5:-74590400 | MsaT029220.1:CDS |
AATGGCGGTGCTAATAGAAA+TGG | 0.444064 | 5:-74590472 | MsaT029220.1:CDS |
GATTGTTATGGTGGTGGTGG+TGG | 0.451027 | 5:+74591939 | None:intergenic |
ATATAATCCGGTGGTGGGTC+CGG | 0.460177 | 5:+74592033 | None:intergenic |
TCTGAACTTCATTTAGGTGG+TGG | 0.463166 | 5:-74590514 | MsaT029220.1:CDS |
CTTCATTTAGGTGGTGGTGG+TGG | 0.465476 | 5:-74590508 | MsaT029220.1:CDS |
CATTAATTATGGACCTGAGA+TGG | 0.472294 | 5:-74591996 | MsaT029220.1:CDS |
GGTGGTGGAGGGTTACTTGG+AGG | 0.474597 | 5:-74590388 | MsaT029220.1:CDS |
GATACTACCTCTAGCCATCA+AGG | 0.481688 | 5:-74591314 | MsaT029220.1:intron |
CCGGATTATATAATTCATCT+AGG | 0.484439 | 5:-74592021 | MsaT029220.1:CDS |
GTTTGTGAAGCAATAAGTCT+AGG | 0.489243 | 5:+74591383 | None:intergenic |
GTCTTCTTCATCACCAATGA+TGG | 0.489923 | 5:-74590446 | MsaT029220.1:CDS |
GGGTACCTGCTGCTAGAAGA+AGG | 0.496203 | 5:-74591484 | MsaT029220.1:CDS |
GGTTTCAAAGATTCTATGCC+GGG | 0.497066 | 5:-74590700 | MsaT029220.1:CDS |
CAAGTACTCTTAACATGAGT+AGG | 0.499272 | 5:+74591506 | None:intergenic |
TCATGAGAAGGATCCATCAT+TGG | 0.499688 | 5:+74590433 | None:intergenic |
GAGCTGCTTCATGATTGTTA+TGG | 0.501220 | 5:+74591927 | None:intergenic |
AAATGAAGTTCAGAAAGGTT+AGG | 0.504881 | 5:+74590523 | None:intergenic |
GTTGCTGGTGGTGGTTCTAG+TGG | 0.506006 | 5:-74591428 | MsaT029220.1:CDS |
GAACTTCATTTAGGTGGTGG+TGG | 0.506112 | 5:-74590511 | MsaT029220.1:CDS |
CGTTCCCTTCTTCTAGCAGC+AGG | 0.506124 | 5:+74591479 | None:intergenic |
CTTCATGATTGTTATGGTGG+TGG | 0.507878 | 5:+74591933 | None:intergenic |
CCGACACCGAGAGCGGTGGC+GGG | 0.513284 | 5:+74591878 | None:intergenic |
CCTAGATGAATTATATAATC+CGG | 0.516389 | 5:+74592021 | None:intergenic |
CATGATTGTTATGGTGGTGG+TGG | 0.519577 | 5:+74591936 | None:intergenic |
ATTGTAGTAATAGAAGGTGT+AGG | 0.521083 | 5:-74591559 | MsaT029220.1:CDS |
ACTGGTTCTGGTAGCAGTAG+TGG | 0.522635 | 5:-74591629 | MsaT029220.1:CDS |
GGTCCCACCGCCGGAAACGC+CGG | 0.524097 | 5:-74592064 | MsaT029220.1:CDS |
GCTCCGGCGTTTCCGGCGGT+GGG | 0.525360 | 5:+74592061 | None:intergenic |
ACGACGGTGGTTGCTGGTGG+TGG | 0.527037 | 5:-74591437 | MsaT029220.1:CDS |
TGAATTATATAATCCGGTGG+TGG | 0.528238 | 5:+74592027 | None:intergenic |
TTCTGGAGCAGCAGCACGAA+GGG | 0.528350 | 5:+74592111 | None:intergenic |
ATTAATTATGGACCTGAGAT+GGG | 0.532955 | 5:-74591995 | MsaT029220.1:CDS |
CTTTCTGAACTTCATTTAGG+TGG | 0.534449 | 5:-74590517 | MsaT029220.1:CDS |
CATGGAGAAGCTGTGAGTAA+AGG | 0.534475 | 5:+74591848 | None:intergenic |
GCAGCAGCTTCAAGTGGTGG+TGG | 0.540984 | 5:-74590403 | MsaT029220.1:CDS |
GCTTCCACCGGACCCACCAC+CGG | 0.548718 | 5:-74592040 | MsaT029220.1:CDS |
AGGTTTCAAAGATTCTATGC+CGG | 0.555014 | 5:-74590701 | MsaT029220.1:CDS |
AATTTGGTTCATGGTACTGG+TGG | 0.555469 | 5:-74591656 | MsaT029220.1:CDS |
ACAACAAACATACCCATCTC+AGG | 0.556410 | 5:+74591983 | None:intergenic |
ACAACAACGTGTCAAGATTG+TGG | 0.558898 | 5:-74591599 | MsaT029220.1:CDS |
CACCTAAATGAAGTTCAGAA+AGG | 0.561618 | 5:+74590518 | None:intergenic |
CTGCTTCATGATTGTTATGG+TGG | 0.564872 | 5:+74591930 | None:intergenic |
GCTCCAGAAGATCTTTCACT+CGG | 0.567750 | 5:-74592097 | MsaT029220.1:CDS |
GAATTATATAATCCGGTGGT+GGG | 0.570532 | 5:+74592028 | None:intergenic |
CGCCACCGCTCTCGGTGTCG+GGG | 0.570886 | 5:-74591876 | MsaT029220.1:CDS |
AGCAACCACCGTCGTTGTCG+CGG | 0.571590 | 5:+74591445 | None:intergenic |
TCTGGTAGCAGTAGTGGTGG+AGG | 0.573944 | 5:-74591623 | MsaT029220.1:CDS |
AGGACTTGTTGTAAAAGTAG+AGG | 0.575268 | 5:-74591539 | MsaT029220.1:CDS |
TGCTGTTGGAGCTGTAATTG+TGG | 0.576451 | 5:+74592463 | None:intergenic |
TATCAAGCTGTAGTGAAGAT+TGG | 0.579339 | 5:-74590604 | MsaT029220.1:CDS |
ATATAGTTGTGGCTACTACA+AGG | 0.581940 | 5:-74592192 | MsaT029220.1:intron |
TTCTTCGACCGCGACAACGA+CGG | 0.583043 | 5:-74591453 | MsaT029220.1:CDS |
GGAAACGCCGGAGCTTCCAC+CGG | 0.586967 | 5:-74592052 | MsaT029220.1:CDS |
TAATCCGGTGGTGGGTCCGG+TGG | 0.587770 | 5:+74592036 | None:intergenic |
GCCGGGTCAAGTACGTGCAC+CGG | 0.588438 | 5:-74590683 | MsaT029220.1:CDS |
AAAGAAAACCTTTGAAAACA+TGG | 0.590040 | 5:+74590578 | None:intergenic |
CTAACACACTTGAATAGAGC+CGG | 0.591611 | 5:+74590664 | None:intergenic |
CGACACCGAGAGCGGTGGCG+GGG | 0.592680 | 5:+74591879 | None:intergenic |
ATTTGGTTCATGGTACTGGT+GGG | 0.594801 | 5:-74591655 | MsaT029220.1:CDS |
GGAAGCTCCGGCGTTTCCGG+CGG | 0.598478 | 5:+74592057 | None:intergenic |
AGTATCAAAGCTTCTAGGAG+GGG | 0.599007 | 5:+74591331 | None:intergenic |
AAGTACTCTTAACATGAGTA+GGG | 0.604249 | 5:+74591507 | None:intergenic |
CAAGCTGTAGTGAAGATTGG+TGG | 0.605202 | 5:-74590601 | MsaT029220.1:CDS |
CAGCTTCAAGTGGTGGTGGA+GGG | 0.610373 | 5:-74590399 | MsaT029220.1:CDS |
GCCGGTGCACGTACTTGACC+CGG | 0.610717 | 5:+74590682 | None:intergenic |
TATGCAGCAGCTTCAAGTGG+TGG | 0.610824 | 5:-74590406 | MsaT029220.1:CDS |
GTAGTATCAAAGCTTCTAGG+AGG | 0.611169 | 5:+74591329 | None:intergenic |
TGATGAGAGAAGAAAATGGT+CGG | 0.611312 | 5:-74592673 | None:intergenic |
GCAAAAGCTCCTGAATCTGA+AGG | 0.612169 | 5:+74592163 | None:intergenic |
TAGTATCAAAGCTTCTAGGA+GGG | 0.613507 | 5:+74591330 | None:intergenic |
AGAGTGACATCAGTGGATGA+TGG | 0.614276 | 5:-74590643 | MsaT029220.1:CDS |
GGTTCTGGTAGCAGTAGTGG+TGG | 0.615782 | 5:-74591626 | MsaT029220.1:CDS |
GGTACCTGCTGCTAGAAGAA+GGG | 0.616105 | 5:-74591483 | MsaT029220.1:CDS |
TAACAAACCTTGATGGCTAG+AGG | 0.619709 | 5:+74591307 | None:intergenic |
TTCGACCGCGACAACGACGG+TGG | 0.620852 | 5:-74591450 | MsaT029220.1:CDS |
CTTCTGGAGCAGCAGCACGA+AGG | 0.625376 | 5:+74592110 | None:intergenic |
TGGTGGTGATGAAAAGAAGA+TGG | 0.632371 | 5:+74591956 | None:intergenic |
TACTCATGTTAAGAGTACTT+GGG | 0.637418 | 5:-74591504 | MsaT029220.1:CDS |
GCTGCATAAACATCATGAGA+AGG | 0.637740 | 5:+74590421 | None:intergenic |
AACCCCGACACCGAGAGCGG+TGG | 0.656167 | 5:+74591874 | None:intergenic |
GTGGCGGGGTTAAGAGAGTG+AGG | 0.668996 | 5:+74591893 | None:intergenic |
ACAACGACGGTGGTTGCTGG+TGG | 0.669044 | 5:-74591440 | MsaT029220.1:CDS |
TCTTTCACTCGGTTTCAATG+CGG | 0.669874 | 5:-74592086 | MsaT029220.1:CDS |
GTTTATGCAGCAGCTTCAAG+TGG | 0.670690 | 5:-74590409 | MsaT029220.1:CDS |
AGATGAATTATATAATCCGG+TGG | 0.675126 | 5:+74592024 | None:intergenic |
TATAACCCCGACACCGAGAG+CGG | 0.681070 | 5:+74591871 | None:intergenic |
GGTGGTGGTAATAATAATGG+CGG | 0.700948 | 5:-74590487 | MsaT029220.1:CDS |
GTGTGTTAGAGTGACATCAG+TGG | 0.704487 | 5:-74590650 | MsaT029220.1:CDS |
AACAATAGAAGAAACCAACA+AGG | 0.735803 | 5:-74591803 | MsaT029220.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 74590360 | 74592680 | 74590360 | ID=MsaG029220 |
Chr5 | mRNA | 74590360 | 74592680 | 74590360 | ID=MsaT029220.1;Parent=MsaG029220 |
Chr5 | exon | 74590360 | 74590727 | 74590360 | ID=MsaT029220.1.exon4;Parent=MsaT029220.1 |
Chr5 | CDS | 74590360 | 74590727 | 74590360 | ID=cds.MsaT029220.1;Parent=MsaT029220.1 |
Chr5 | exon | 74591315 | 74592208 | 74591315 | ID=MsaT029220.1.exon3;Parent=MsaT029220.1 |
Chr5 | CDS | 74591315 | 74592208 | 74591315 | ID=cds.MsaT029220.1;Parent=MsaT029220.1 |
Chr5 | exon | 74592393 | 74592518 | 74592393 | ID=MsaT029220.1.exon2;Parent=MsaT029220.1 |
Chr5 | CDS | 74592393 | 74592518 | 74592393 | ID=cds.MsaT029220.1;Parent=MsaT029220.1 |
Chr5 | exon | 74592599 | 74592680 | 74592599 | ID=MsaT029220.1.exon1;Parent=MsaT029220.1 |
Chr5 | CDS | 74592599 | 74592680 | 74592599 | ID=cds.MsaT029220.1;Parent=MsaT029220.1 |
Gene Sequence |
Protein sequence |