AlfalfaGEDB | MsaG029222

M. sativa ssp. caerulea / MsaG029222

KEGG: -
GO: -
PFAM: PF00046.32

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029222	XP_003617278.1	95.221	544	12	1	1	530	1	544	0.0	1067

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029222	sp\|F4HY56\|RLT1_ARATH	55.357	56	25	0	20	75	41	96	1.84e-13	77.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029222	tr\|G7K365\|G7K365_MEDTR	95.221	544	12	1	1	530	1	544	0.0	1067

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG029222	TF	HB-other

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029222	MtrunA17_Chr5g0441991	95.221	544	12	1	1	530	1	544	0.0	1067
MsaG029222	MtrunA17_Chr3g0094681	56.134	538	195	9	1	529	1	506	0.0	530
MsaG029222	MtrunA17_Chr4g0046591	53.571	56	26	0	20	75	33	88	3.37e-13	72.8
MsaG029222	MtrunA17_Chr2g0282771	51.724	58	28	0	20	77	42	99	1.21e-12	70.9

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029222	AT4G03250.1	39.964	548	265	15	3	530	4	507	7.49e-85	272
MsaG029222	AT1G28420.1	55.357	56	25	0	20	75	41	96	1.87e-14	77.4

Showing 1 to 2 of 2 entries

Previous1Next

Find 117 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGCCTGCACAGCTTAA+GGG	0.415864	5:+74683480	MsaT029222.1:CDS
AAAGAAGAAGCAAATGCTAA+TGG	0.457102	5:+74683717	MsaT029222.1:CDS
AAATTCTTCACAACAATGGA+AGG	0.554885	5:+74682687	None:intergenic
AACATGGGATATAAGCCATC+GGG	0.524849	5:+74684074	MsaT029222.1:CDS
AAGAAAGAGGGCTATCTTCT+AGG	0.323284	5:+74687535	MsaT029222.1:CDS
AAGCAATATCGCGATGCAGG+TGG	0.577401	5:+74687696	MsaT029222.1:CDS
AATTTGATCCACTTCCTCCT+GGG	0.526950	5:+74684198	MsaT029222.1:CDS
ACAAAACAATCAATCCAGTG+AGG	0.737591	5:-74688693	None:intergenic
ACAACATTGCTAAGAATCAT+AGG	0.408486	5:+74687283	MsaT029222.1:CDS
ACACTCCTTTGCACATTCTT+TGG	0.238382	5:-74687432	None:intergenic

Showing 1 to 10 of 117 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	74682702	74688706	74682702	ID=MsaG029222
Chr5	mRNA	74682702	74688706	74682702	ID=MsaT029222.1;Parent=MsaG029222
Chr5	exon	74682702	74682708	74682702	ID=MsaT029222.1.exon1;Parent=MsaT029222.1
Chr5	CDS	74682702	74682708	74682702	ID=cds.MsaT029222.1;Parent=MsaT029222.1
Chr5	exon	74683415	74683522	74683415	ID=MsaT029222.1.exon2;Parent=MsaT029222.1
Chr5	CDS	74683415	74683522	74683415	ID=cds.MsaT029222.1;Parent=MsaT029222.1
Chr5	exon	74683601	74684254	74683601	ID=MsaT029222.1.exon3;Parent=MsaT029222.1
Chr5	CDS	74683601	74684254	74683601	ID=cds.MsaT029222.1;Parent=MsaT029222.1
Chr5	exon	74686577	74686656	74686577	ID=MsaT029222.1.exon4;Parent=MsaT029222.1
Chr5	CDS	74686577	74686656	74686577	ID=cds.MsaT029222.1;Parent=MsaT029222.1
Chr5	exon	74687066	74687566	74687066	ID=MsaT029222.1.exon5;Parent=MsaT029222.1
Chr5	CDS	74687066	74687566	74687066	ID=cds.MsaT029222.1;Parent=MsaT029222.1
Chr5	exon	74687663	74687746	74687663	ID=MsaT029222.1.exon6;Parent=MsaT029222.1
Chr5	CDS	74687663	74687746	74687663	ID=cds.MsaT029222.1;Parent=MsaT029222.1
Chr5	exon	74687868	74687956	74687868	ID=MsaT029222.1.exon7;Parent=MsaT029222.1
Chr5	CDS	74687868	74687956	74687868	ID=cds.MsaT029222.1;Parent=MsaT029222.1
Chr5	exon	74688637	74688706	74688637	ID=MsaT029222.1.exon8;Parent=MsaT029222.1
Chr5	CDS	74688637	74688706	74688637	ID=cds.MsaT029222.1;Parent=MsaT029222.1

Gene Sequence

>MsaT029222.1

ATGGAAGAATCAAGTGAGTTGCAACCAGAAGAAAATAAAGTCTCTGCGGAGAAGTTTCCGAAAAGAAAGCTCAAAACGCCTGCACAGCTTAAGGGATTGGAGAAATTTTATACGGAGCACAAATATCCAACAGAGGAATTGAAATTAGCAATTGCTGAGGAGTTAGAGTTGACAGAAAAGCAAGTTTCTGGATGGTTTTGTCACCGAAGGTTAAAGGATAAAAGATTGTTGAAAGAAGAAGCAAATGCTAATGGACGACAAGATCGTTCAAGCGGTGTCATCCAGGATCGTGGCAGTGGACTTGGACAAGATTCGTGTGGAAGCAGTAAACATGGTGATTATAAGTATCTGGATCCTAAAGAGGTTGAGAGCAATGGCCTCTACAATCGCGATTTGTCTGTTGCAGATATGACGTACGGACGCAGGAATCATTTTTCTGAAAATGTCAGTGGAATGGATGATGACACATCATCTGAGAGTAGCTCTTATTTGCAAGAACGTTTGTATCCTCAAGGCCAAGATCCATATGAGATGGAGCCTTCTAGATATAGTAAAGCTCTTCCACCCTTAAATCCGAAAGGTGCAATCAACATGGGATATAAGCCATCGGGATATTTGAAAGTGAAGGGTGAGATAGAACATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGAATTATCAGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCCACTTCCTCCTGGGGCATTTGAATGCCAAACTGAAGACGCAGTTCATGAACCATACCATATTGCTGATCCTGCTCTTCTGAATTCTCCAGAAATCTCCACAGTGAAAAGTCGACCTGGTCTTAGCTCTAGATATGATTCATATTATACTAAACATGGTTCCCAAGATACTCATATGGAAGGAGTTGACTTTGGTTCGTTGCATGATGTTCATGTTCAGGATAAACAAGATAAGAAAGCTTTCCATGGTACCAAACATAGACAAACTTTTCAGAGTAATGCCAGTCGTTTTCCTGGCAGGAACTCTTCCTTAGATTTGTACGAAGACTCTACTGGAGAAGCTGCTTACAACATTGCTAAGAATCATAGGAAGGATTCCAAGCGTGGTGTTGAGGGTATGAGATCTGATTCTACTTCTAACCATAGTGATCGCTATGAAGAAAACCTCCCAGTCAAACATTCAGACTTCCCACAGTATAACTATGAAAACACCAATCCAAAGAATGTGCAAAGGAGTGTTCATGCAGACATTCTTCAATATGACTATGATAATGTCAATCCAAAGAAAGCGCAAAGGAGTGAACACATGAAATCTACTGAAGAAAGAGGGCTATCTTCTAGGATGACTAAGGATGAATTGTTTAAAGGGGACAGGAAGGCAAAAAAGCAATATCGCGATGCAGGTGGAGCAGGGATGCTTTCAAATGAGACTATGGTTGCAAAACGACTTAAAGCAAATACGTTTCAACCATACAATATGAAACAGGTTCCTGTTGCTGAGATAGAACCAAGGAAAACTCAGAGATCTGCTGCAGAGATGCCGTCTAGCTTTAGCGAGGATGAAACTGCTGATACCAGTTCCTCACTGGATTGA

Protein sequence

>MsaT029222.1

MEESSELQPEENKVSAEKFPKRKLKTPAQLKGLEKFYTEHKYPTEELKLAIAEELELTEKQVSGWFCHRRLKDKRLLKEEANANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYKYLDPKEVESNGLYNRDLSVADMTYGRRNHFSENVSGMDDDTSSESSSYLQERLYPQGQDPYEMEPSRYSKALPPLNPKGAINMGYKPSGYLKVKGEIEHAAITAVKKQLGRNYQEDGPLLGVEFDPLPPGAFECQTEDAVHEPYHIADPALLNSPEISTVKSRPGLSSRYDSYYTKHGSQDTHMEGVDFGSLHDVHVQDKQDKKAFHGTKHRQTFQSNASRFPGRNSSLDLYEDSTGEAAYNIAKNHRKDSKRGVEGMRSDSTSNHSDRYEENLPVKHSDFPQYNYENTNPKNVQRSVHADILQYDYDNVNPKKAQRSEHMKSTEERGLSSRMTKDELFKGDRKAKKQYRDAGGAGMLSNETMVAKRLKANTFQPYNMKQVPVAEIEPRKTQRSAAEMPSSFSEDETADTSSSLD*