AlfalfaGEDB | MsaG029251

M. sativa ssp. caerulea / MsaG029251

KEGG: -
GO: GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0040008 GO:0044464 GO:0048367 GO:0048437 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0099402
PFAM: PF12799.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029251	XP_003617299.1	92.621	908	30	2	1	871	60	967	0.0	1681

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029251	sp\|O65440\|BAME3_ARATH	60.557	933	301	6	2	869	62	992	0.0	1080

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029251	tr\|G7KCY3\|G7KCY3_MEDTR	92.621	908	30	2	1	871	60	967	0.0	1681

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029251	MtrunA17_Chr5g0442151	92.621	908	30	2	1	871	60	967	0.0	1681
MsaG029251	MtrunA17_Chr3g0095081	69.635	932	211	9	1	864	76	1003	0.0	1252
MsaG029251	MtrunA17_Chr2g0277081	55.796	923	335	9	2	865	55	963	0.0	970
MsaG029251	MtrunA17_Chr5g0400681	53.152	920	363	8	6	865	57	968	0.0	950
MsaG029251	MtrunA17_Chr4g0054521	53.233	928	349	11	6	866	57	966	0.0	944
MsaG029251	MtrunA17_Chr4g0035464	46.652	881	412	10	21	860	97	960	0.0	763
MsaG029251	MtrunA17_Chr4g0035464	31.373	357	240	3	164	518	71	424	1.40e-39	158
MsaG029251	MtrunA17_Chr1g0183231	37.728	933	495	12	7	864	59	980	0.0	584
MsaG029251	MtrunA17_Chr7g0262141	38.470	941	479	15	7	864	67	990	0.0	573
MsaG029251	MtrunA17_Chr4g0018701	38.200	911	483	13	17	864	106	999	0.0	571

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029251	AT4G20270.1	60.557	933	301	6	2	869	62	992	0.0	1080
MsaG029251	AT5G65700.1	54.054	925	355	9	2	865	55	970	0.0	951
MsaG029251	AT5G65700.2	54.054	925	355	9	2	865	55	970	0.0	951
MsaG029251	AT3G49670.1	53.579	922	353	10	6	865	58	966	0.0	935
MsaG029251	AT1G75820.1	48.256	889	400	8	17	860	94	967	0.0	811
MsaG029251	AT1G75820.1	32.682	358	235	4	164	518	72	426	6.28e-37	150
MsaG029251	AT1G75820.1	29.502	261	156	2	16	275	360	593	1.81e-25	114
MsaG029251	AT5G61480.1	39.391	952	472	17	2	864	66	1001	0.0	611
MsaG029251	AT1G28440.1	37.164	931	493	11	7	863	50	962	0.0	548
MsaG029251	AT4G28650.1	37.299	933	496	15	7	864	62	980	4.47e-179	543

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Find 151 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACTTGGTTCTATTA+AGG	0.148719	5:-75122023	MsaT029251.1:CDS
AAACTCAAGTACTTGAATTT+TGG	0.145757	5:-75123237	MsaT029251.1:CDS
AAAGAACTTGGTTCTATTAA+GGG	0.277200	5:-75122022	MsaT029251.1:CDS
AAAGGTTGTTCTTATGATAA+TGG	0.265000	5:-75121536	MsaT029251.1:CDS
AAATCATATCCACATAACTT+TGG	0.402382	5:+75121902	None:intergenic
AAATTCAAGTACTTGAGTTT+AGG	0.322508	5:+75123240	None:intergenic
AACAATGCCAAATGGAGAAA+AGG	0.494398	5:-75121588	MsaT029251.1:CDS
AACACAAACACTTCTAAACT+CGG	0.563876	5:-75122376	MsaT029251.1:CDS
AACAGAAGCTTATACTTCGC+CGG	0.554608	5:+75121809	None:intergenic
AACTGCATTGCTTCATCTAA+AGG	0.430540	5:+75120053	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	75119941	75123526	75119941	ID=MsaG029251
Chr5	mRNA	75119941	75123526	75119941	ID=MsaT029251.1;Parent=MsaG029251
Chr5	exon	75119941	75120167	75119941	ID=MsaT029251.1.exon2;Parent=MsaT029251.1
Chr5	CDS	75119941	75120167	75119941	ID=cds.MsaT029251.1;Parent=MsaT029251.1
Chr5	exon	75121138	75123526	75121138	ID=MsaT029251.1.exon1;Parent=MsaT029251.1
Chr5	CDS	75121138	75123526	75121138	ID=cds.MsaT029251.1;Parent=MsaT029251.1

Gene Sequence

>MsaT029251.1

ATGTCCCTTTGTACTACTTGGTATGGTGTTCTATGTGACACAAACAATAGTTCTGTTGTGTCACTAGATATATCAAACTTGAATGTTTCTGGAACTTTTTCATCTTCCATCACAAAACTATCAAACTTGAGATTCCTCAACATATCCAACAACATGTTCAATGGAAATCTAAGTTGGAAATTCTCTCATTTCAAAGAGCTTGAAGTTCTTGATGCTTACAACAATGAGTTCAATTGTTCACTACCTCTTGGTGTCACTGATTTACCTAAACTCAAGTACTTGAATTTTGGAGGAAATTTTTTCTATGGAGAAATTCCTTCAAAATATGGAAACATGTTGCAGCTTAACTATTTGTCTCTTGCAGGTAATGATTTGAGAGGTTTCATACCTTTTGAGCTTGGAAATCTTACTAATCTTACACACCTTTTGTTAGGTTATTATAATGAGTTTGATGGTGAAATTCCACCTCATTTTGGTAACCTTGTTAATTTAGTTCATCTTGATCTTGCAAACTGTGGTTTGAAAGGTTCAATTCCACATGAGTTAGGAAAAATTTACAAACTAAACACACTTTTCTTGCAAACCAATCAACTTAGTGGTTCAATTCCACCTCAATTAGGGAATCTTAGTAGTTTGAAATCTCTTGATATGTCAAACAATGAGTTAATTGGAAACATACCTAATGAGTTTTCAAATCTTCGCGAACTCACACTCTTGAACTTGTTCATCAACAAACTCTTTGGTGAAATTCCATCTTTTGTTGCTGAGTTACCAAATTTGGAAGTGTTAAAACTTTGGCAAAACAACTTCACAGGTTCTATTCCTTCCAAGCTTGGACAGAATGGTAAATTGAGTGAACTTGATTTATCAACAAATAAACTCACTGGATTAGTACCTAAATCTTTATGTCTTGGAAAAAGGTTAAAGATTCTAATCTTGCTTAACAATTTTTTGTTTGGTTCTTTGCCTAATGAGTTTGGTCATTGTTACACACTTCAAAGAGTTCGTTTAGGACAAAACTATTTAACAGGTTCAATACCAAAAGGTTTTCTTTATTTGCCTCAACTTTCACTTCTTGAACTTCAAAACAATTTCCTTAGTGGTTTTCTTCCACAACAAGAAAGCACAAACACAAACACTTCTAAACTCGGAGAGATGAATCTTTCGAACAATCGTTTCTCCGGATCACTACCAAATTCTATTGGAAACTTTCCAAACTTGCAGATTCTGCTTCTTCATCGAAATAGATTCTCAGGTGAAATCCCTTCAGATATAGGAAATTTGAAGAACATTCTCAGGTTGGATATGAGTTTCAACAACTTTTCAGGAACTATTCCTATTGAAATAGGTAAATGTTCTTCACTCACCTTTTTAGATTTGAGTCAGAACAAATTATCAGGTCCTATTCCAATTCAAGTCTCTCAAATTCACATACTTAACTATCTTAATGTCTCATGGAACAACCTAAACCAAACACTTCCAAAAGAACTTGGTTCTATTAAGGGCTTAACTTCAGCTGATTTCTCTCATAATGACTTCTCTGGCTCAGTTCCTGAAATAGGACAATTCTCAATGTTCAATTCTACATCCTTTGTTGGTAATCCAAAGTTATGTGGATATGATTTGAATCCATGCAACCAATCTTCATCAGAAACATTAGAGTCTCGGAAAAATGGTGGTGAGAAACCTGGAATTCCGGCGAAGTATAAGCTTCTGTTTGCATTAGCACTTTTGGTTTGTTCATTGGTTTTTGCAACATTTGCTATCATCAAGGGTAGAAAAGGATTTAGGAGGGACTCAAATTCATGGAAGTTAACAGCATTTCAGAAGATTGAATATGGAAGTGAAGACATTTTAGGATGTGTAAAGGAAAGTAACATCATAGGAAGAGGAGGTGCTGGTGTTGTATATGGTGGAACAATGCCAAATGGAGAAAAGGTAGCTGTGAAGAAGTTGTTAGGAATTAACAAAGGTTGTTCTTATGATAATGGTTTATCAGCTGAAATAAAAACACTTGGTAGAATAAGGCACAGGTACATTGTGAAGTTGTTAGCATTTTGTTCAAATAGAGACACTAATTTGCTTGTTTATGAGTATATGACAAATGGTAGTTTAGGTGAAGTGTTGCATGGGAAAAGAGGGGGGTTTCTTGAGTGGGATGTTAGGGTGAAAATAGCAACTGAAGCTGCTAAAGGACTTTGCTATTTGCACCATGATTGTTGTCCTTTGATTGTTCATAGAGATGTTAAGTCAAATAACATATTGTTGAACTCTGAGTTTGAGGCTCACGTTGCTGATTTTGGACTTGCTAAGTTCTTGTTGCAAGATACTGGTGGGACTTCTGAATGCATGTCTTCTATTGTTGGTTCTTATGGCTACATTGCTCCAGAAGGAATGGATATTGTTCAATGGACCAAGTTACAAACTGATTGGAACAAAGAAAGTGTGGTGAAGATTCTTGATGGGAGGTTACATAATATTCCTTTAGATGAAGCAATGCAGTTATTCTTTGTAGCTATGTGTTGTGTTGAGGAACAAAGTGTGGAACGACCAACCATGAGAGAAGTGGTTGAAATGCTAGGACAAGTAAAGCAACCAGATATATTTCAAGTGTGA

Protein sequence

>MsaT029251.1

MSLCTTWYGVLCDTNNSSVVSLDISNLNVSGTFSSSITKLSNLRFLNISNNMFNGNLSWKFSHFKELEVLDAYNNEFNCSLPLGVTDLPKLKYLNFGGNFFYGEIPSKYGNMLQLNYLSLAGNDLRGFIPFELGNLTNLTHLLLGYYNEFDGEIPPHFGNLVNLVHLDLANCGLKGSIPHELGKIYKLNTLFLQTNQLSGSIPPQLGNLSSLKSLDMSNNELIGNIPNEFSNLRELTLLNLFINKLFGEIPSFVAELPNLEVLKLWQNNFTGSIPSKLGQNGKLSELDLSTNKLTGLVPKSLCLGKRLKILILLNNFLFGSLPNEFGHCYTLQRVRLGQNYLTGSIPKGFLYLPQLSLLELQNNFLSGFLPQQESTNTNTSKLGEMNLSNNRFSGSLPNSIGNFPNLQILLLHRNRFSGEIPSDIGNLKNILRLDMSFNNFSGTIPIEIGKCSSLTFLDLSQNKLSGPIPIQVSQIHILNYLNVSWNNLNQTLPKELGSIKGLTSADFSHNDFSGSVPEIGQFSMFNSTSFVGNPKLCGYDLNPCNQSSSETLESRKNGGEKPGIPAKYKLLFALALLVCSLVFATFAIIKGRKGFRRDSNSWKLTAFQKIEYGSEDILGCVKESNIIGRGGAGVVYGGTMPNGEKVAVKKLLGINKGCSYDNGLSAEIKTLGRIRHRYIVKLLAFCSNRDTNLLVYEYMTNGSLGEVLHGKRGGFLEWDVRVKIATEAAKGLCYLHHDCCPLIVHRDVKSNNILLNSEFEAHVADFGLAKFLLQDTGGTSECMSSIVGSYGYIAPEGMDIVQWTKLQTDWNKESVVKILDGRLHNIPLDEAMQLFFVAMCCVEEQSVERPTMREVVEMLGQVKQPDIFQV*