AlfalfaGEDB | MsaG029355

M. sativa ssp. caerulea / MsaG029355

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010453 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042659 GO:0043565 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029355	XP_003617423.1	97.742	310	6	1	1	309	1	310	0.0	618

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029355	sp\|Q8VWJ2\|WRK28_ARATH	45.151	299	135	12	22	309	38	318	9.76e-56	186

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029355	tr\|G7KD54\|G7KD54_MEDTR	97.742	310	6	1	1	309	1	310	0.0	618

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TFs/TRs:

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Gene ID	Type	Classification
MsaG029355	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029355	MtrunA17_Chr5g0443131	97.742	310	6	1	1	309	1	310	0.0	618
MsaG029355	MtrunA17_Chr4g0051881	44.966	298	135	11	28	303	41	331	7.11e-58	189
MsaG029355	MtrunA17_Chr1g0194481	45.685	197	85	4	125	301	125	319	4.39e-46	158
MsaG029355	MtrunA17_Chr5g0418781	46.429	196	86	5	123	308	89	275	1.19e-45	155
MsaG029355	MtrunA17_Chr7g0270191	46.277	188	88	5	121	301	108	289	1.78e-41	145
MsaG029355	MtrunA17_Chr2g0294231	77.381	84	19	0	141	224	187	270	4.36e-41	146
MsaG029355	MtrunA17_Chr4g0068541	55.556	108	39	2	141	248	192	290	9.29e-35	130
MsaG029355	MtrunA17_Chr8g0335811	53.509	114	48	1	100	213	102	210	7.42e-34	123
MsaG029355	MtrunA17_Chr7g0218081	43.353	173	84	4	64	233	323	484	3.13e-33	127
MsaG029355	MtrunA17_Chr7g0218081	44.762	105	42	2	127	216	183	286	1.13e-18	86.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029355	AT4G18170.1	45.151	299	135	12	22	309	38	318	9.92e-57	186
MsaG029355	AT1G29860.1	45.936	283	119	9	33	303	17	277	7.81e-54	177
MsaG029355	AT5G46350.1	51.579	190	75	5	34	220	71	246	4.15e-46	159
MsaG029355	AT1G69310.4	42.056	214	103	5	90	303	92	284	1.43e-44	154
MsaG029355	AT1G69310.2	42.056	214	103	5	90	303	92	284	1.43e-44	154
MsaG029355	AT1G69310.1	42.056	214	103	5	90	303	92	284	1.43e-44	154
MsaG029355	AT2G47260.1	62.931	116	39	2	127	241	143	255	9.14e-43	150
MsaG029355	AT5G49520.1	47.802	182	70	4	141	301	205	382	2.37e-41	148
MsaG029355	AT1G69310.3	40.187	214	103	6	90	303	92	280	4.80e-39	139
MsaG029355	AT5G07100.2	49.275	138	61	2	90	227	83	211	8.63e-37	131

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Find 51 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGTACTATGAGAAGA+AGG	0.513903	5:+76067883	None:intergenic
AAAGATAAGCAGCCAAAATT+AGG	0.162626	5:-76067640	MsaT029355.1:CDS
AAATAATTTAACCTTGGGTA+CGG	0.496177	5:+76066979	None:intergenic
AACACAAAGAAATCTAGTGC+AGG	0.593942	5:-76067760	MsaT029355.1:CDS
AACCATAGTCACGACGAAGT+TGG	0.520777	5:+76065703	None:intergenic
AAGATAAGCAGCCAAAATTA+GGG	0.416196	5:-76067639	MsaT029355.1:CDS
AGAAGTGCATTGTGAAGAAA+AGG	0.456809	5:-76066007	MsaT029355.1:CDS
ATCACTGTCCAGCAACACTT+AGG	0.489854	5:-76065923	MsaT029355.1:CDS
ATCATGATTCTCATTAGCCA+TGG	0.579134	5:+76067972	None:intergenic
ATCTTGAAGATGGATATAGA+TGG	0.508856	5:-76067035	MsaT029355.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	76065653	76067992	76065653	ID=MsaG029355
Chr5	mRNA	76065653	76067992	76065653	ID=MsaT029355.1;Parent=MsaG029355
Chr5	exon	76065653	76066052	76065653	ID=MsaT029355.1.exon3;Parent=MsaT029355.1
Chr5	CDS	76065653	76066052	76065653	ID=cds.MsaT029355.1;Parent=MsaT029355.1
Chr5	exon	76066991	76067131	76066991	ID=MsaT029355.1.exon2;Parent=MsaT029355.1
Chr5	CDS	76066991	76067131	76066991	ID=cds.MsaT029355.1;Parent=MsaT029355.1
Chr5	exon	76067604	76067992	76067604	ID=MsaT029355.1.exon1;Parent=MsaT029355.1
Chr5	CDS	76067604	76067992	76067604	ID=cds.MsaT029355.1;Parent=MsaT029355.1

Gene Sequence

>MsaT029355.1

ATGGCTAATGAGAATCATGATCCTTTCTATCACGATGAACTCAATCACTCTAACTTTTCATTTTCACAAAACTTTCAAGGATTTGATCCTTCTTCTCATAGTACAAGTTTTAGTGACTACTTACAAGGTTCCATGGACTATAACACCCTATCAAAAGCCTTTGACTTGTCTTGTTCTTCATCTGAAGTGATTTCTTCCATTGATGACAACAACACAAAGAAATCTAGTGCAGGAGACTTATCATCACTAGTAGGGATTAGTGAGACACCAAAATCTTCAGAATCATCCTCATCTAATGAAGCTGTCATAGAAGAAAACTCAACCAACAAAAAAGATAAGCAGCCAAAATTAGGGTGTGAAGATGGAGATGATGAAAAGTCTAAGAAAGAGAACAAGGCTAAAAAGAAAGAGAAAAAGGTAAAAGAGCCACGGTTTGCATTCTTGACTAAAAGTGAGATTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAAGCAGTCAAGAATAGTCCGTACCCAAGGAGCTATTATAGATGCACAAGTCAGAAGTGCATTGTGAAGAAAAGGGTGGAAAGATCATACCAAGATCCATCAATTGTGATGACAACATATGAAGGACAACACAACCATCACTGTCCAGCAACACTTAGGGGTAATGCTTCCTCCATGTTGTTGTCATCATCACCATCCCTATTTGCTTCCACTTCAATGGGATTGGAGCAAAGATTACACCAAGATTTCTTTTCTCAGTTTCTTCCAACTTATAGCCAAAGTGATCCACAAATTTTCCACCAAAATCTTCCACAACCTCATCAGCAACAGCAACAACAACATCAGCAGCAGCAGTTCCAACTTCGTCGTGACTATGGTTTGTTGCAAGATTTACTACCATCATCATTTCCTGGAAAACAAGAGCCTTGA

Protein sequence

>MsaT029355.1

MANENHDPFYHDELNHSNFSFSQNFQGFDPSSHSTSFSDYLQGSMDYNTLSKAFDLSCSSSEVISSIDDNNTKKSSAGDLSSLVGISETPKSSESSSSNEAVIEENSTNKKDKQPKLGCEDGDDEKSKKENKAKKKEKKVKEPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCIVKKRVERSYQDPSIVMTTYEGQHNHHCPATLRGNASSMLLSSSPSLFASTSMGLEQRLHQDFFSQFLPTYSQSDPQIFHQNLPQPHQQQQQQHQQQQFQLRRDYGLLQDLLPSSFPGKQEP*