AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG029355

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG029355 MtrunA17_Chr5g0443131 97.742 310 6 1 1 309 1 310 0.0 618
MsaG029355 MtrunA17_Chr4g0051881 44.966 298 135 11 28 303 41 331 7.11e-58 189
MsaG029355 MtrunA17_Chr1g0194481 45.685 197 85 4 125 301 125 319 4.39e-46 158
MsaG029355 MtrunA17_Chr5g0418781 46.429 196 86 5 123 308 89 275 1.19e-45 155
MsaG029355 MtrunA17_Chr7g0270191 46.277 188 88 5 121 301 108 289 1.78e-41 145
MsaG029355 MtrunA17_Chr2g0294231 77.381 84 19 0 141 224 187 270 4.36e-41 146
MsaG029355 MtrunA17_Chr4g0068541 55.556 108 39 2 141 248 192 290 9.29e-35 130
MsaG029355 MtrunA17_Chr8g0335811 53.509 114 48 1 100 213 102 210 7.42e-34 123
MsaG029355 MtrunA17_Chr7g0218081 43.353 173 84 4 64 233 323 484 3.13e-33 127
MsaG029355 MtrunA17_Chr7g0218081 44.762 105 42 2 127 216 183 286 1.13e-18 86.3
MsaG029355 MtrunA17_Chr7g0248721 52.893 121 52 2 95 215 83 198 1.31e-31 117
MsaG029355 MtrunA17_Chr3g0129361 66.216 74 25 0 140 213 127 200 3.25e-31 116
MsaG029355 MtrunA17_Chr5g0418191 48.760 121 52 2 131 241 294 414 3.36e-31 121
MsaG029355 MtrunA17_Chr5g0418191 41.071 112 50 3 157 261 151 253 4.97e-17 81.3
MsaG029355 MtrunA17_Chr5g0445311 51.402 107 49 1 138 244 345 448 2.31e-30 120
MsaG029355 MtrunA17_Chr5g0445311 57.627 59 24 1 158 216 201 258 5.01e-14 72.4
MsaG029355 MtrunA17_Chr3g0129321 44.538 119 60 1 117 229 72 190 5.06e-30 113
MsaG029355 MtrunA17_Chr8g0383351 65.333 75 25 1 140 213 142 216 9.10e-30 113
MsaG029355 MtrunA17_Chr7g0249311 41.611 149 78 3 115 254 345 493 1.45e-29 118
MsaG029355 MtrunA17_Chr7g0249311 58.571 70 27 2 157 225 179 247 1.84e-17 82.8
MsaG029355 MtrunA17_Chr4g0042831 60.000 80 32 0 138 217 259 338 2.80e-29 115
MsaG029355 MtrunA17_Chr4g0042831 42.500 80 42 1 137 216 129 204 2.10e-15 76.3
MsaG029355 MtrunA17_Chr3g0101131 57.303 89 37 1 138 226 396 483 2.95e-29 117
MsaG029355 MtrunA17_Chr3g0101131 38.679 106 64 1 124 229 210 314 6.15e-14 72.4
MsaG029355 MtrunA17_Chr3g0079691 50.485 103 46 1 121 218 454 556 3.80e-29 117
MsaG029355 MtrunA17_Chr3g0079691 59.375 64 25 1 157 220 280 342 2.46e-17 82.4
MsaG029355 MtrunA17_Chr1g0150801 66.234 77 25 1 137 213 83 158 1.14e-28 108
MsaG029355 MtrunA17_Chr4g0004911 62.025 79 30 0 138 216 317 395 1.43e-28 114
MsaG029355 MtrunA17_Chr4g0004911 46.392 97 51 1 157 253 184 279 1.26e-18 85.9
MsaG029355 MtrunA17_Chr5g0432161 53.922 102 43 2 126 224 387 487 1.47e-28 115
MsaG029355 MtrunA17_Chr5g0432161 55.000 60 26 1 157 216 244 302 4.87e-14 72.4
MsaG029355 MtrunA17_Chr7g0243891 52.830 106 46 2 122 227 342 443 2.12e-28 114
MsaG029355 MtrunA17_Chr7g0243891 56.250 64 27 1 157 220 216 278 2.14e-15 76.6
MsaG029355 MtrunA17_Chr3g0106491 52.381 105 44 2 119 217 321 425 3.02e-28 114
MsaG029355 MtrunA17_Chr3g0106491 51.471 68 32 1 157 224 198 264 1.40e-14 73.9
MsaG029355 MtrunA17_Chr7g0224801 65.217 69 24 0 145 213 81 149 8.24e-28 106
MsaG029355 MtrunA17_Chr7g0249301 56.790 81 35 0 138 218 273 353 4.10e-27 109
MsaG029355 MtrunA17_Chr7g0249301 54.930 71 30 2 156 225 61 130 1.95e-16 79.0
MsaG029355 MtrunA17_Chr7g0263531 45.455 121 52 2 119 225 309 429 1.66e-26 108
MsaG029355 MtrunA17_Chr7g0263531 55.405 74 30 2 158 229 190 262 5.83e-17 80.9
MsaG029355 MtrunA17_Chr1g0188941 51.899 79 38 0 141 219 35 113 2.54e-26 100
MsaG029355 MtrunA17_Chr3g0099641 31.780 236 118 6 82 288 171 392 2.77e-26 107
MsaG029355 MtrunA17_Chr8g0383251 54.762 84 38 0 135 218 86 169 4.60e-26 102
MsaG029355 MtrunA17_Chr8g0386241 50.000 86 43 0 128 213 74 159 2.97e-25 99.8
MsaG029355 MtrunA17_Chr2g0302391 34.132 167 105 3 90 255 146 308 7.47e-24 100
MsaG029355 MtrunA17_Chr5g0447701 51.648 91 43 1 142 232 237 326 2.66e-22 95.9
MsaG029355 MtrunA17_Chr7g0238921 66.667 57 19 0 157 213 124 180 8.91e-22 93.6
MsaG029355 MtrunA17_Chr6g0485431 48.148 81 41 1 143 222 140 220 2.98e-21 92.8
MsaG029355 MtrunA17_Chr1g0147881 40.187 107 62 2 123 227 227 333 6.10e-21 91.7
MsaG029355 MtrunA17_Chr2g0288871 35.374 147 79 4 85 216 220 365 1.07e-20 92.4
MsaG029355 MtrunA17_Chr2g0333851 50.000 82 38 2 139 217 149 230 2.70e-20 89.4
MsaG029355 MtrunA17_Chr2g0322391 40.385 104 55 2 133 229 325 428 2.93e-20 91.3
MsaG029355 MtrunA17_Chr4g0075201 46.914 81 42 1 137 216 247 327 5.92e-20 90.1
MsaG029355 MtrunA17_Chr4g0074001 47.500 80 42 0 138 217 340 419 5.93e-20 90.1
MsaG029355 MtrunA17_Chr7g0270831 49.351 77 38 1 141 216 200 276 7.35e-20 89.4
MsaG029355 MtrunA17_Chr1g0150281 40.594 101 50 4 119 213 101 197 7.61e-20 87.4
MsaG029355 MtrunA17_Chr4g0025061 43.269 104 52 2 137 233 340 443 1.15e-19 89.4
MsaG029355 MtrunA17_Chr4g0025051 44.330 97 47 2 144 233 322 418 2.45e-19 88.2
MsaG029355 MtrunA17_Chr4g0060271 47.436 78 40 1 140 216 238 315 2.48e-19 88.2
MsaG029355 MtrunA17_Chr5g0401821 43.434 99 52 2 134 231 176 271 3.01e-19 85.5
MsaG029355 MtrunA17_Chr4g0053281 34.615 182 108 5 54 231 164 338 3.30e-19 86.7
MsaG029355 MtrunA17_Chr2g0284321 55.000 60 26 1 158 216 36 95 5.51e-19 84.0
MsaG029355 MtrunA17_Chr4g0051181 47.436 78 40 1 141 217 227 304 6.85e-19 86.7
MsaG029355 MtrunA17_Chr3g0139021 41.837 98 56 1 118 214 275 372 7.05e-19 86.3
MsaG029355 MtrunA17_Chr8g0387501 55.556 63 27 1 156 217 128 190 7.25e-19 84.7
MsaG029355 MtrunA17_Chr7g0216891 44.681 94 47 2 141 233 203 292 1.05e-18 86.7
MsaG029355 MtrunA17_Chr8g0379461 47.500 80 41 1 140 218 59 138 1.84e-18 82.8
MsaG029355 MtrunA17_Chr2g0319961 42.718 103 53 3 119 216 39 140 3.06e-18 82.8
MsaG029355 MtrunA17_Chr3g0136961 51.667 60 28 1 155 213 136 195 3.56e-18 83.2
MsaG029355 MtrunA17_Chr8g0348311 56.667 60 25 1 158 216 156 215 5.81e-18 83.2
MsaG029355 MtrunA17_Chr7g0248691 54.098 61 27 1 158 217 155 215 1.42e-17 81.6
MsaG029355 MtrunA17_Chr7g0270051 41.414 99 51 2 128 219 18 116 1.87e-17 80.5
MsaG029355 MtrunA17_Chr2g0293481 55.738 61 26 1 158 217 268 328 2.28e-17 82.4
MsaG029355 MtrunA17_Chr1g0184691 52.239 67 31 1 158 223 294 360 2.68e-17 81.3
MsaG029355 MtrunA17_Chr4g0071521 44.578 83 44 2 133 213 220 302 3.59e-17 80.5
MsaG029355 MtrunA17_Chr4g0001361 44.318 88 45 2 156 239 161 248 4.28e-17 80.5
MsaG029355 MtrunA17_Chr1g0189391 46.479 71 37 1 144 213 84 154 1.13e-16 79.3
MsaG029355 MtrunA17_Chr7g0228941 54.386 57 25 1 158 213 53 109 3.23e-16 73.9
MsaG029355 MtrunA17_Chr1g0202461 46.429 84 43 2 158 240 262 344 6.77e-16 77.4
MsaG029355 MtrunA17_Chr1g0150271 46.774 62 32 1 156 216 100 161 1.83e-15 74.7
MsaG029355 MtrunA17_Chr3g0126391 37.931 116 50 6 115 215 84 192 2.53e-15 75.5
MsaG029355 MtrunA17_Chr8g0387981 43.956 91 42 3 129 211 100 189 5.08e-15 74.7
MsaG029355 MtrunA17_Chr4g0024391 37.500 104 58 2 137 233 209 312 7.60e-15 74.7
MsaG029355 MtrunA17_Chr5g0447711 40.816 98 50 2 142 232 215 311 8.31e-15 73.6
MsaG029355 MtrunA17_Chr5g0432071 46.667 75 38 2 157 230 104 177 1.89e-14 71.2
MsaG029355 MtrunA17_Chr7g0275531 38.835 103 53 3 156 254 117 213 2.34e-14 72.4
MsaG029355 MtrunA17_Chr8g0347251 33.065 124 74 3 96 211 71 193 8.12e-14 71.2
MsaG029355 MtrunA17_Chr2g0289181 46.032 63 33 1 157 218 14 76 1.16e-13 69.3
MsaG029355 MtrunA17_Chr2g0315381 35.484 124 54 3 156 253 143 266 2.38e-13 69.3
MsaG029355 MtrunA17_Chr7g0244981 50.000 58 26 1 157 211 122 179 1.65e-12 66.6
MsaG029355 MtrunA17_Chr2g0315361 50.847 59 26 1 156 211 147 205 1.95e-12 66.6
MsaG029355 MtrunA17_Chr7g0244971 40.449 89 40 3 156 237 122 204 5.03e-12 65.5
MsaG029355 MtrunA17_Chr1g0188961 46.552 58 28 1 177 234 3 57 1.22e-11 59.3
MsaG029355 MtrunA17_Chr3g0128671 33.613 119 59 5 127 232 102 213 1.69e-11 63.9
MsaG029355 MtrunA17_Chr8g0334541 48.276 58 27 1 157 211 103 160 2.36e-11 63.2
MsaG029355 MtrunA17_Chr5g0428351 28.682 129 81 4 121 244 151 273 5.16e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG029355 AT4G18170.1 45.151 299 135 12 22 309 38 318 9.92e-57 186
MsaG029355 AT1G29860.1 45.936 283 119 9 33 303 17 277 7.81e-54 177
MsaG029355 AT5G46350.1 51.579 190 75 5 34 220 71 246 4.15e-46 159
MsaG029355 AT1G69310.4 42.056 214 103 5 90 303 92 284 1.43e-44 154
MsaG029355 AT1G69310.2 42.056 214 103 5 90 303 92 284 1.43e-44 154
MsaG029355 AT1G69310.1 42.056 214 103 5 90 303 92 284 1.43e-44 154
MsaG029355 AT2G47260.1 62.931 116 39 2 127 241 143 255 9.14e-43 150
MsaG029355 AT5G49520.1 47.802 182 70 4 141 301 205 382 2.37e-41 148
MsaG029355 AT1G69310.3 40.187 214 103 6 90 303 92 280 4.80e-39 139
MsaG029355 AT5G07100.2 49.275 138 61 2 90 227 83 211 8.63e-37 131
MsaG029355 AT5G07100.2 43.836 73 41 0 157 229 24 96 6.27e-15 72.8
MsaG029355 AT5G07100.4 49.275 138 61 2 90 227 83 211 8.63e-37 131
MsaG029355 AT5G07100.4 43.836 73 41 0 157 229 24 96 6.27e-15 72.8
MsaG029355 AT5G07100.5 49.275 138 61 2 90 227 83 211 8.63e-37 131
MsaG029355 AT5G07100.5 43.836 73 41 0 157 229 24 96 6.27e-15 72.8
MsaG029355 AT5G07100.3 49.275 138 61 2 90 227 83 211 8.63e-37 131
MsaG029355 AT5G07100.3 43.836 73 41 0 157 229 24 96 6.27e-15 72.8
MsaG029355 AT5G07100.1 49.275 138 61 2 90 227 176 304 1.52e-36 133
MsaG029355 AT5G07100.1 43.836 73 41 0 157 229 117 189 8.95e-15 73.9
MsaG029355 AT3G62340.1 62.353 85 32 0 135 219 96 180 1.45e-33 124
MsaG029355 AT4G39410.1 67.073 82 27 0 132 213 198 279 2.17e-33 125
MsaG029355 AT2G46130.1 67.500 80 26 0 136 215 9 88 4.04e-33 118
MsaG029355 AT2G44745.1 64.286 84 29 1 130 213 119 201 5.61e-33 121
MsaG029355 AT2G03340.1 40.719 167 85 3 57 217 317 475 5.47e-32 124
MsaG029355 AT2G03340.1 59.091 66 25 2 157 222 250 313 2.44e-17 82.8
MsaG029355 AT1G13960.2 62.025 79 30 0 138 216 237 315 3.41e-30 117
MsaG029355 AT1G13960.2 59.701 67 25 2 157 222 76 141 9.24e-18 83.2
MsaG029355 AT4G26640.5 43.571 140 65 3 84 218 136 266 4.86e-30 117
MsaG029355 AT4G26640.5 52.857 70 32 1 157 226 35 103 4.88e-15 75.5
MsaG029355 AT4G26640.6 43.571 140 65 3 84 218 136 266 4.86e-30 117
MsaG029355 AT4G26640.6 52.857 70 32 1 157 226 35 103 4.88e-15 75.5
MsaG029355 AT4G26640.4 43.571 140 65 3 84 218 136 266 4.86e-30 117
MsaG029355 AT4G26640.4 52.857 70 32 1 157 226 35 103 4.88e-15 75.5
MsaG029355 AT4G26640.3 43.571 140 65 3 84 218 136 266 4.86e-30 117
MsaG029355 AT4G26640.3 52.857 70 32 1 157 226 35 103 4.88e-15 75.5
MsaG029355 AT1G13960.1 62.025 79 30 0 138 216 390 468 5.87e-30 119
MsaG029355 AT1G13960.1 59.701 67 25 2 157 222 229 294 6.26e-18 84.3
MsaG029355 AT5G41570.1 53.763 93 43 0 123 215 64 156 7.54e-30 112
MsaG029355 AT4G26640.1 43.571 140 65 3 84 218 240 370 1.14e-29 118
MsaG029355 AT4G26640.1 52.857 70 32 1 157 226 139 207 5.36e-15 75.5
MsaG029355 AT4G26640.7 43.571 140 65 3 84 218 272 402 1.22e-29 118
MsaG029355 AT4G26640.7 52.857 70 32 1 157 226 171 239 5.19e-15 75.9
MsaG029355 AT1G64000.1 60.000 85 33 1 131 215 89 172 1.51e-29 112
MsaG029355 AT4G26640.2 43.571 140 65 3 84 218 312 442 1.73e-29 118
MsaG029355 AT4G26640.2 52.857 70 32 1 157 226 211 279 5.21e-15 75.9
MsaG029355 AT5G26170.1 64.286 70 25 0 144 213 100 169 4.85e-29 109
MsaG029355 AT3G01080.2 52.747 91 43 0 126 216 313 403 1.22e-28 114
MsaG029355 AT3G01080.2 54.412 68 30 1 157 224 205 271 6.00e-17 81.3
MsaG029355 AT3G01970.1 62.857 70 26 0 144 213 52 121 1.34e-28 107
MsaG029355 AT3G01080.1 52.747 91 43 0 126 216 275 365 2.01e-28 114
MsaG029355 AT3G01080.1 54.412 68 30 1 157 224 167 233 7.53e-17 80.9
MsaG029355 AT2G38470.1 59.302 86 34 1 138 223 343 427 2.35e-28 114
MsaG029355 AT2G38470.1 58.333 60 24 1 157 216 184 242 1.91e-14 73.9
MsaG029355 AT2G30250.1 62.651 83 31 0 138 220 309 391 2.89e-28 112
MsaG029355 AT2G30250.1 39.423 104 57 2 127 230 141 238 6.80e-13 68.9
MsaG029355 AT2G46130.2 62.500 80 26 1 136 215 9 84 9.12e-28 104
MsaG029355 AT5G56270.1 56.790 81 35 0 138 218 468 548 1.28e-27 113
MsaG029355 AT5G56270.1 61.667 60 22 1 157 216 273 331 1.35e-16 80.9
MsaG029355 AT5G13080.1 64.286 70 25 0 144 213 54 123 4.27e-27 103
MsaG029355 AT5G64810.1 49.533 107 48 3 127 229 76 180 7.79e-27 104
MsaG029355 AT4G26440.1 45.600 125 56 2 123 237 328 450 2.08e-25 106
MsaG029355 AT4G26440.1 56.667 60 25 1 157 216 178 236 1.15e-14 74.7
MsaG029355 AT2G04880.2 51.648 91 44 0 137 227 263 353 5.45e-25 104
MsaG029355 AT2G04880.2 53.030 66 28 2 156 221 110 172 1.12e-13 71.6
MsaG029355 AT2G04880.1 51.648 91 44 0 137 227 287 377 7.02e-25 104
MsaG029355 AT2G04880.1 46.154 91 44 4 156 246 110 195 1.71e-14 74.3
MsaG029355 AT2G37260.3 47.154 123 55 5 119 238 233 348 3.82e-24 100
MsaG029355 AT2G37260.3 48.315 89 40 3 158 241 86 173 7.37e-16 77.4
MsaG029355 AT2G37260.2 47.154 123 55 5 119 238 231 346 3.87e-24 100
MsaG029355 AT2G37260.2 48.315 89 40 3 158 241 84 171 7.27e-16 77.4
MsaG029355 AT2G37260.1 47.899 119 52 5 119 234 313 424 6.96e-24 101
MsaG029355 AT2G37260.1 54.286 70 28 2 158 224 166 234 9.62e-16 77.8
MsaG029355 AT2G21900.1 41.905 105 57 2 130 230 78 182 1.40e-23 96.3
MsaG029355 AT4G04450.2 42.373 118 61 2 121 231 162 279 1.93e-23 100
MsaG029355 AT4G04450.1 42.373 118 61 2 121 231 256 373 6.02e-23 99.4
MsaG029355 AT4G30935.1 44.118 102 51 2 141 240 315 412 1.84e-21 94.7
MsaG029355 AT4G31800.2 48.750 80 40 1 156 234 110 189 2.88e-21 90.9
MsaG029355 AT4G31800.1 48.750 80 40 1 156 234 175 254 4.80e-21 91.7
MsaG029355 AT1G62300.1 35.570 149 85 3 79 216 224 372 1.27e-20 92.4
MsaG029355 AT1G68150.1 43.689 103 55 2 141 242 219 319 1.44e-20 91.3
MsaG029355 AT2G25000.2 56.452 62 26 1 156 216 102 163 1.54e-20 88.6
MsaG029355 AT2G25000.4 56.452 62 26 1 156 216 102 163 1.54e-20 88.6
MsaG029355 AT2G30590.1 41.228 114 63 3 104 213 257 370 1.60e-20 91.3
MsaG029355 AT1G55600.1 53.425 73 34 0 144 216 294 366 1.66e-20 92.0
MsaG029355 AT4G22070.4 48.148 81 41 1 137 216 277 357 2.30e-20 91.7
MsaG029355 AT4G22070.3 48.148 81 41 1 137 216 277 357 2.30e-20 91.7
MsaG029355 AT4G22070.2 48.148 81 41 1 137 216 277 357 2.30e-20 91.7
MsaG029355 AT4G22070.1 48.148 81 41 1 137 216 277 357 2.30e-20 91.7
MsaG029355 AT2G25000.3 56.452 62 26 1 156 216 124 185 2.71e-20 88.6
MsaG029355 AT2G25000.1 56.452 62 26 1 156 216 145 206 3.99e-20 88.6
MsaG029355 AT4G01250.1 40.217 92 52 2 126 216 99 188 2.53e-19 86.7
MsaG029355 AT1G18860.1 48.718 78 39 1 140 216 222 299 2.98e-19 88.6
MsaG029355 AT1G29280.1 56.452 62 26 1 158 218 75 136 5.50e-19 85.1
MsaG029355 AT5G15130.2 36.641 131 74 2 96 225 132 254 7.62e-19 87.0
MsaG029355 AT1G80840.1 41.667 96 51 2 132 222 117 212 7.71e-19 85.5
MsaG029355 AT5G15130.1 36.641 131 74 2 96 225 174 296 8.41e-19 87.0
MsaG029355 AT3G58710.1 42.857 105 55 2 119 218 29 133 1.34e-18 84.3
MsaG029355 AT4G01720.1 34.615 130 81 2 88 216 173 299 2.32e-18 85.5
MsaG029355 AT4G23550.1 54.545 66 29 1 152 216 135 200 3.38e-18 83.6
MsaG029355 AT3G58710.2 43.810 105 53 3 119 218 29 132 1.13e-17 81.6
MsaG029355 AT5G52830.1 57.377 61 25 1 158 217 166 226 1.15e-17 82.8
MsaG029355 AT3G01080.3 54.412 68 30 1 157 224 205 271 1.90e-17 81.6
MsaG029355 AT5G45050.4 43.564 101 54 3 126 225 1011 1109 2.23e-17 83.2
MsaG029355 AT5G45050.1 44.000 100 53 3 126 224 1150 1247 2.24e-17 83.2
MsaG029355 AT5G45050.2 45.745 94 48 3 132 224 1128 1219 2.25e-17 83.2
MsaG029355 AT4G31550.2 41.975 81 46 1 134 213 222 302 2.38e-17 81.6
MsaG029355 AT5G43290.1 58.621 58 24 0 157 214 114 171 2.52e-17 80.9
MsaG029355 AT2G34830.1 56.667 60 25 1 158 216 216 275 3.67e-17 82.0
MsaG029355 AT2G34830.2 56.667 60 25 1 158 216 225 284 3.95e-17 81.6
MsaG029355 AT2G23320.1 45.679 81 43 1 134 213 217 297 4.68e-17 80.5
MsaG029355 AT4G31550.1 40.964 83 48 1 132 213 221 303 5.12e-17 80.5
MsaG029355 AT5G28650.1 41.573 89 51 1 126 213 231 319 1.01e-16 79.7
MsaG029355 AT1G30650.1 55.000 60 26 1 158 216 218 277 1.61e-16 80.1
MsaG029355 AT4G24240.1 43.373 83 45 2 133 213 256 338 2.48e-16 79.0
MsaG029355 AT2G24570.1 40.476 84 49 1 132 214 218 301 2.71e-16 78.6
MsaG029355 AT3G04670.1 40.449 89 52 1 126 213 231 319 5.24e-16 77.8
MsaG029355 AT1G69810.2 45.570 79 41 2 140 216 128 206 4.93e-15 75.1
MsaG029355 AT1G69810.1 45.570 79 41 2 140 216 186 264 5.21e-15 75.5
MsaG029355 AT2G46400.1 40.816 98 52 3 121 215 69 163 2.21e-14 72.8
MsaG029355 AT2G40750.1 32.877 146 83 5 106 239 99 241 6.24e-14 72.0
MsaG029355 AT4G12020.3 38.400 125 67 3 56 177 544 661 1.14e-13 72.4
MsaG029355 AT4G12020.3 43.421 76 42 1 156 231 467 541 7.81e-12 66.6
MsaG029355 AT4G12020.2 38.400 125 67 3 56 177 544 661 1.15e-13 72.4
MsaG029355 AT4G12020.2 43.421 76 42 1 156 231 467 541 8.48e-12 66.6
MsaG029355 AT4G12020.4 38.400 125 67 3 56 177 544 661 1.16e-13 72.0
MsaG029355 AT4G12020.4 43.421 76 42 1 156 231 467 541 8.71e-12 66.6
MsaG029355 AT4G12020.6 38.400 125 67 3 56 177 544 661 1.17e-13 72.0
MsaG029355 AT4G12020.6 43.421 76 42 1 156 231 467 541 7.75e-12 66.6
MsaG029355 AT4G12020.8 38.400 125 67 3 56 177 544 661 1.17e-13 72.0
MsaG029355 AT4G12020.8 43.421 76 42 1 156 231 467 541 7.75e-12 66.6
MsaG029355 AT4G12020.10 38.400 125 67 3 56 177 544 661 1.18e-13 72.0
MsaG029355 AT4G12020.10 43.421 76 42 1 156 231 467 541 7.88e-12 66.6
MsaG029355 AT1G66560.1 51.724 58 25 1 157 211 103 160 1.20e-13 70.1
MsaG029355 AT4G12020.1 38.400 125 67 3 56 177 544 661 1.20e-13 72.0
MsaG029355 AT4G12020.1 43.421 76 42 1 156 231 467 541 8.51e-12 66.6
MsaG029355 AT4G12020.9 38.400 125 67 3 56 177 544 661 1.20e-13 72.0
MsaG029355 AT4G12020.9 43.421 76 42 1 156 231 467 541 8.51e-12 66.6
MsaG029355 AT4G12020.11 38.400 125 67 3 56 177 544 661 1.22e-13 72.0
MsaG029355 AT4G12020.11 43.421 76 42 1 156 231 467 541 8.75e-12 66.2
MsaG029355 AT4G12020.7 38.400 125 67 3 56 177 544 661 1.24e-13 72.0
MsaG029355 AT4G12020.7 43.421 76 42 1 156 231 467 541 8.74e-12 66.6
MsaG029355 AT4G12020.5 38.400 125 67 3 56 177 477 594 1.29e-13 72.0
MsaG029355 AT4G12020.5 43.421 76 42 1 156 231 400 474 8.92e-12 66.6
MsaG029355 AT3G56400.1 38.400 125 67 5 95 215 61 179 4.17e-13 68.9
MsaG029355 AT1G80590.1 43.662 71 37 1 158 225 86 156 1.12e-12 67.0
MsaG029355 AT1G66600.1 50.847 59 26 1 156 211 102 160 1.53e-12 66.6
MsaG029355 AT4G11070.2 50.000 58 26 1 157 211 109 166 5.01e-12 65.5
MsaG029355 AT4G11070.1 50.000 58 26 1 157 211 141 198 5.41e-12 65.9
MsaG029355 AT1G66550.2 49.123 57 26 1 158 211 104 160 1.53e-11 63.9
MsaG029355 AT2G40740.1 42.500 80 40 2 157 230 173 252 1.54e-11 64.3
MsaG029355 AT5G01900.1 50.877 57 25 1 158 211 111 167 1.61e-11 63.9
MsaG029355 AT1G66550.1 49.123 57 26 1 158 211 109 165 1.76e-11 63.5
MsaG029355 AT2G40740.3 42.500 80 40 2 157 230 182 261 2.04e-11 63.9
MsaG029355 AT5G45260.1 38.532 109 60 4 123 225 1172 1279 4.88e-11 64.3
MsaG029355 AT5G24110.1 45.763 59 29 1 156 211 112 170 6.76e-11 62.4

Find 51 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGATAAGCAGCCAAAATT+AGG 0.162626 5:-76067640 MsaT029355.1:CDS
CCATCTTCACACCCTAATTT+TGG 0.163856 5:+76067628 None:intergenic
GAGGATGATTCTGAAGATTT+TGG 0.268686 5:+76067703 None:intergenic
GATGAGGTTGTGGAAGATTT+TGG 0.287257 5:+76065760 None:intergenic
TATGTTGTCATCACAATTGA+TGG 0.321462 5:+76065963 None:intergenic
GGATATAGATGGAGAAAATA+TGG 0.326911 5:-76067024 MsaT029355.1:CDS
CCATTGAAGTGGAAGCAAAT+AGG 0.331270 5:+76065862 None:intergenic
CCTATTTGCTTCCACTTCAA+TGG 0.351388 5:-76065862 MsaT029355.1:CDS
TTCCAACTTCGTCGTGACTA+TGG 0.365043 5:-76065705 MsaT029355.1:CDS
CTTTGTGTTGTTGTCATCAA+TGG 0.382924 5:+76067774 None:intergenic
TGCTTCCACTTCAATGGGAT+TGG 0.385569 5:-76065856 MsaT029355.1:CDS
CATTGAAGTGGAAGCAAATA+GGG 0.387044 5:+76065863 None:intergenic
TTACTACCATCATCATTTCC+TGG 0.387601 5:-76065669 MsaT029355.1:CDS
TCATCACAATTGATGGATCT+TGG 0.397918 5:+76065970 None:intergenic
CTATTTGCTTCCACTTCAAT+GGG 0.415381 5:-76065861 MsaT029355.1:CDS
GCATTACCCCTAAGTGTTGC+TGG 0.415723 5:+76065915 None:intergenic
AAGATAAGCAGCCAAAATTA+GGG 0.416196 5:-76067639 MsaT029355.1:CDS
GGAGACTTATCATCACTAGT+AGG 0.425549 5:-76067739 MsaT029355.1:CDS
GAAACTGAGAAAAGAAATCT+TGG 0.441450 5:+76065820 None:intergenic
TGATAGGGTGTTATAGTCCA+TGG 0.453460 5:+76067840 None:intergenic
AGAAGTGCATTGTGAAGAAA+AGG 0.456809 5:-76066007 MsaT029355.1:CDS
TCACTGTCCAGCAACACTTA+GGG 0.468430 5:-76065922 MsaT029355.1:CDS
TGCTGTTGCTGATGAGGTTG+TGG 0.472117 5:+76065750 None:intergenic
GGATCACTTTGGCTATAAGT+TGG 0.478377 5:+76065795 None:intergenic
ATCACTGTCCAGCAACACTT+AGG 0.489854 5:-76065923 MsaT029355.1:CDS
GAGATTGATCATCTTGAAGA+TGG 0.494596 5:-76067045 MsaT029355.1:CDS
AAATAATTTAACCTTGGGTA+CGG 0.496177 5:+76066979 None:intergenic
CCAAAATTAGGGTGTGAAGA+TGG 0.502839 5:-76067628 MsaT029355.1:CDS
ATCTTGAAGATGGATATAGA+TGG 0.508856 5:-76067035 MsaT029355.1:CDS
AAACTTGTACTATGAGAAGA+AGG 0.513903 5:+76067883 None:intergenic
AACCATAGTCACGACGAAGT+TGG 0.520777 5:+76065703 None:intergenic
TGACTACTTACAAGGTTCCA+TGG 0.522130 5:-76067857 MsaT029355.1:CDS
TTGCTCCAATCCCATTGAAG+TGG 0.528723 5:+76065851 None:intergenic
GGAAAATTTGTGGATCACTT+TGG 0.533405 5:+76065784 None:intergenic
TGTTGTTGCTGTTGCTGATG+AGG 0.533557 5:+76065744 None:intergenic
TTGAGTTCATCGTGATAGAA+AGG 0.543194 5:+76067949 None:intergenic
ATTGTGATGACAACATATGA+AGG 0.558492 5:-76065957 MsaT029355.1:CDS
TATGACAGCTTCATTAGATG+AGG 0.578389 5:+76067684 None:intergenic
ATCATGATTCTCATTAGCCA+TGG 0.579134 5:+76067972 None:intergenic
GAGACTTATCATCACTAGTA+GGG 0.580015 5:-76067738 MsaT029355.1:CDS
AACACAAAGAAATCTAGTGC+AGG 0.593942 5:-76067760 MsaT029355.1:CDS
CACTGTCCAGCAACACTTAG+GGG 0.611634 5:-76065921 MsaT029355.1:CDS
TGAAGAACAAGACAAGTCAA+AGG 0.626003 5:+76067813 None:intergenic
TCAAGAATAGTCCGTACCCA+AGG 0.626808 5:-76066990 MsaT029355.1:intron
TAAGTGTTGCTGGACAGTGA+TGG 0.643871 5:+76065925 None:intergenic
GAAGTGCATTGTGAAGAAAA+GGG 0.651750 5:-76066006 MsaT029355.1:CDS
GAAGTGGAAGCAAATAGGGA+TGG 0.655945 5:+76065867 None:intergenic
GTGCATTGTGAAGAAAAGGG+TGG 0.664530 5:-76066003 MsaT029355.1:CDS
TGGTGATGATGACAACAACA+TGG 0.706923 5:+76065887 None:intergenic
TTAGTCAAGAATGCAAACCG+TGG 0.731382 5:+76067072 None:intergenic
TGATGATGACAACAACATGG+AGG 0.818574 5:+76065890 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 76065653 76067992 76065653 ID=MsaG029355
Chr5 mRNA 76065653 76067992 76065653 ID=MsaT029355.1;Parent=MsaG029355
Chr5 exon 76065653 76066052 76065653 ID=MsaT029355.1.exon3;Parent=MsaT029355.1
Chr5 CDS 76065653 76066052 76065653 ID=cds.MsaT029355.1;Parent=MsaT029355.1
Chr5 exon 76066991 76067131 76066991 ID=MsaT029355.1.exon2;Parent=MsaT029355.1
Chr5 CDS 76066991 76067131 76066991 ID=cds.MsaT029355.1;Parent=MsaT029355.1
Chr5 exon 76067604 76067992 76067604 ID=MsaT029355.1.exon1;Parent=MsaT029355.1
Chr5 CDS 76067604 76067992 76067604 ID=cds.MsaT029355.1;Parent=MsaT029355.1
Gene Sequence

>MsaT029355.1

ATGGCTAATGAGAATCATGATCCTTTCTATCACGATGAACTCAATCACTCTAACTTTTCATTTTCACAAAACTTTCAAGGATTTGATCCTTCTTCTCATAGTACAAGTTTTAGTGACTACTTACAAGGTTCCATGGACTATAACACCCTATCAAAAGCCTTTGACTTGTCTTGTTCTTCATCTGAAGTGATTTCTTCCATTGATGACAACAACACAAAGAAATCTAGTGCAGGAGACTTATCATCACTAGTAGGGATTAGTGAGACACCAAAATCTTCAGAATCATCCTCATCTAATGAAGCTGTCATAGAAGAAAACTCAACCAACAAAAAAGATAAGCAGCCAAAATTAGGGTGTGAAGATGGAGATGATGAAAAGTCTAAGAAAGAGAACAAGGCTAAAAAGAAAGAGAAAAAGGTAAAAGAGCCACGGTTTGCATTCTTGACTAAAAGTGAGATTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAAGCAGTCAAGAATAGTCCGTACCCAAGGAGCTATTATAGATGCACAAGTCAGAAGTGCATTGTGAAGAAAAGGGTGGAAAGATCATACCAAGATCCATCAATTGTGATGACAACATATGAAGGACAACACAACCATCACTGTCCAGCAACACTTAGGGGTAATGCTTCCTCCATGTTGTTGTCATCATCACCATCCCTATTTGCTTCCACTTCAATGGGATTGGAGCAAAGATTACACCAAGATTTCTTTTCTCAGTTTCTTCCAACTTATAGCCAAAGTGATCCACAAATTTTCCACCAAAATCTTCCACAACCTCATCAGCAACAGCAACAACAACATCAGCAGCAGCAGTTCCAACTTCGTCGTGACTATGGTTTGTTGCAAGATTTACTACCATCATCATTTCCTGGAAAACAAGAGCCTTGA
Protein sequence

>MsaT029355.1

MANENHDPFYHDELNHSNFSFSQNFQGFDPSSHSTSFSDYLQGSMDYNTLSKAFDLSCSSSEVISSIDDNNTKKSSAGDLSSLVGISETPKSSESSSSNEAVIEENSTNKKDKQPKLGCEDGDDEKSKKENKAKKKEKKVKEPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCIVKKRVERSYQDPSIVMTTYEGQHNHHCPATLRGNASSMLLSSSPSLFASTSMGLEQRLHQDFFSQFLPTYSQSDPQIFHQNLPQPHQQQQQQHQQQQFQLRRDYGLLQDLLPSSFPGKQEP*