AlfalfaGEDB | MsaG029417

M. sativa ssp. caerulea / MsaG029417

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF01388.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029417	XP_003612426.2	79.618	157	17	3	1	148	1	151	3.85e-63	225
MsaG029417	XP_003612426.2	83.849	291	35	4	148	429	254	541	2.66e-163	483

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029417	sp\|Q940Y3\|ARID3_ARATH	53.307	257	92	7	188	429	480	723	5.29e-78	261

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029417	tr\|G7K2M1\|G7K2M1_MEDTR	79.618	157	17	3	1	148	1	151	1.84e-63	225
MsaG029417	tr\|G7K2M1\|G7K2M1_MEDTR	83.849	291	35	4	148	429	254	541	1.27e-163	483

TFs/TRs:

Gene ID	Type	Classification
MsaG029417	TR	ARID

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029417	MtrunA17_Chr5g0407561	83.849	291	35	4	148	429	254	541	2.44e-167	483
MsaG029417	MtrunA17_Chr5g0407561	79.618	157	17	3	1	148	1	151	3.54e-67	225
MsaG029417	MtrunA17_Chr3g0144341	45.646	333	131	11	116	429	7	308	8.11e-71	228

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029417	AT2G17410.2	54.118	255	87	7	188	429	480	717	4.56e-79	261
MsaG029417	AT2G17410.1	53.307	257	92	7	188	429	480	723	5.38e-79	261
MsaG029417	AT2G17410.3	53.307	257	92	7	188	429	480	723	5.38e-79	261
MsaG029417	AT1G76510.2	48.560	243	107	5	199	429	137	373	3.05e-61	205
MsaG029417	AT1G76510.4	48.560	243	107	5	199	429	137	373	3.05e-61	205
MsaG029417	AT1G76510.1	48.560	243	107	5	199	429	137	373	3.05e-61	205
MsaG029417	AT1G20910.1	46.914	243	111	5	199	429	101	337	5.95e-56	190
MsaG029417	AT1G20910.2	43.165	278	139	6	164	429	67	337	1.04e-55	189
MsaG029417	AT1G76510.3	44.361	266	107	6	199	429	137	396	3.64e-55	191

Find 95 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCCATTCTCCATAAAATT+TGG	0.109421	5:-76822019	None:intergenic
AATCTTGCTGGTTTGGAATT+AGG	0.186518	5:+76821469	MsaT029417.1:CDS
CCACAGTTTCCTGGACTTTC+CGG	0.219944	5:+76823758	MsaT029417.1:CDS
AGGAGCTTGAAAACTTCTTT+AGG	0.247131	5:+76821971	MsaT029417.1:CDS
AACATGTTCTGCTGCGAATC+CGG	0.285848	5:-76821877	None:intergenic
CTTCTTTAGGGAGAGGAGTA+TGG	0.293766	5:+76821984	MsaT029417.1:CDS
GAAATATATGCTTTAGTTCC+TGG	0.296044	5:+76825608	MsaT029417.1:CDS
GGACTTGCACCACAGTTTCC+TGG	0.301953	5:+76823749	MsaT029417.1:intron
ACGTAAGAGCCCATCTTATA+TGG	0.307472	5:+76825141	MsaT029417.1:CDS
TATGAAAGGCATAACATAAA+AGG	0.325509	5:+76824095	MsaT029417.1:CDS
TATTGATAATCTTGCTGGTT+TGG	0.333193	5:+76821462	MsaT029417.1:CDS
GCCTGTGAATGTTGAAAATC+AGG	0.345539	5:+76824154	MsaT029417.1:CDS
GGAGCTTGAAAACTTCTTTA+GGG	0.352045	5:+76821972	MsaT029417.1:CDS
AGCCATTCTCCATAAAATTT+GGG	0.353493	5:-76822018	None:intergenic
ATTCCTGTCCTTGTATCATC+AGG	0.357516	5:-76821784	None:intergenic
TAAGATGGGCTCTTACGTTT+AGG	0.359154	5:-76825136	None:intergenic
TTCCAAACCCAGAAAATAGA+AGG	0.366855	5:-76824709	None:intergenic
CATAGGACCTTCTGCTGATT+GGG	0.368858	5:+76825464	MsaT029417.1:CDS
CAAAGTGGGTCAGGGTGTTC+CGG	0.378330	5:+76821360	MsaT029417.1:CDS
ACATAGGACCTTCTGCTGAT+TGG	0.380929	5:+76825463	MsaT029417.1:CDS
GTGTCAGATGATGTCAAAAC+TGG	0.381353	5:+76821580	MsaT029417.1:CDS
GAAGTTTCCTCTACAGTAAC+CGG	0.388879	5:-76821541	None:intergenic
ATGATTATTGATAATCTTGC+TGG	0.390384	5:+76821457	MsaT029417.1:CDS
TGTCTTAACTGTGGTCTTGA+AGG	0.397597	5:-76825193	None:intergenic
ACCTCCTCCCGCAGAAGGCC+AGG	0.415357	5:-76825626	None:intergenic
ACTGCATTATCCATATAAGA+TGG	0.421547	5:-76825151	None:intergenic
AGAAAACGACAAAGTGGGTC+AGG	0.425358	5:+76821351	MsaT029417.1:CDS
GGCCTTCTGCGGGAGGAGGT+TGG	0.443652	5:+76825629	MsaT029417.1:CDS
TGTTCAAGATACCCTTCATT+CGG	0.446726	5:+76821675	MsaT029417.1:CDS
ATACCTTCTGAAACAACCTT+GGG	0.449374	5:-76821640	None:intergenic
GATGCTGATCATTATTATGA+TGG	0.450037	5:+76821907	MsaT029417.1:CDS
ATGGAGAGCTGTGATGAGAT+TGG	0.450926	5:+76822167	MsaT029417.1:CDS
ACATGTTCTGCTGCGAATCC+GGG	0.460181	5:-76821876	None:intergenic
TTTAGTTCCTGGCCTTCTGC+GGG	0.466389	5:+76825619	MsaT029417.1:CDS
TCCTGGCCTTCTGCGGGAGG+AGG	0.468253	5:+76825625	MsaT029417.1:CDS
GATGCATCTTGAAGTTCAAC+CGG	0.489348	5:+76821522	MsaT029417.1:CDS
CAGAAAATAGAAGGAGTTCT+CGG	0.490353	5:-76824700	None:intergenic
TACAAAAGAAAACGACAAAG+TGG	0.494694	5:+76821345	MsaT029417.1:CDS
TCACCTTCTCATAAAATCTC+CGG	0.500478	5:-76823777	None:intergenic
AATACCTTCTGAAACAACCT+TGG	0.501857	5:-76821641	None:intergenic
TTGAAAACTTCTTTAGGGAG+AGG	0.501970	5:+76821977	MsaT029417.1:CDS
TGGAGAGCTGTGATGAGATT+GGG	0.502339	5:+76822168	MsaT029417.1:CDS
TATTATGATGGAAATGAGTC+GGG	0.503594	5:+76821919	MsaT029417.1:CDS
GAAAATGAAAATTCAAAACT+AGG	0.506491	5:+76821421	MsaT029417.1:CDS
TATGCCTTTCATAATCAAGA+AGG	0.508041	5:-76824085	None:intergenic
TCCTCTACATTAACATTCGC+CGG	0.508778	5:-76821379	None:intergenic
CTTTAGTTCCTGGCCTTCTG+CGG	0.509492	5:+76825618	MsaT029417.1:CDS
CAGCCGCCTCAACCGAATGA+AGG	0.516023	5:-76821687	None:intergenic
TCATATGTTGGACACAGCTA+AGG	0.516542	5:+76821714	MsaT029417.1:CDS
TTATTATGATGGAAATGAGT+CGG	0.516599	5:+76821918	MsaT029417.1:CDS
AATCATTCAACATAATAGAA+AGG	0.520780	5:-76822221	None:intergenic
AGATACCCTTCATTCGGTTG+AGG	0.521109	5:+76821681	MsaT029417.1:CDS
AGGCCCTTCTTGATTATGAA+AGG	0.535189	5:+76824081	MsaT029417.1:intron
GTCCTTGTATCATCAGGGGC+AGG	0.543099	5:-76821778	None:intergenic
CTCCAACCTCCTCCCGCAGA+AGG	0.545798	5:-76825631	None:intergenic
AGTTCCTGGCCTTCTGCGGG+AGG	0.546177	5:+76825622	MsaT029417.1:CDS
TTAGAAGTTGAAAGTAAGGA+CGG	0.547589	5:+76821817	MsaT029417.1:CDS
AAACCCAAGGTTGTTTCAGA+AGG	0.551480	5:+76821637	MsaT029417.1:CDS
ATAAAATCTCCGGAAAGTCC+AGG	0.551594	5:-76823767	None:intergenic
CTGCATTATCCATATAAGAT+GGG	0.554084	5:-76825150	None:intergenic
AGTTCAACCGGTTACTGTAG+AGG	0.554846	5:+76821534	MsaT029417.1:CDS
GAGGAAGCTGACCATGTCAT+TGG	0.555265	5:+76821397	MsaT029417.1:CDS
TTCCTGCCCCTGATGATACA+AGG	0.557681	5:+76821776	MsaT029417.1:CDS
GAGATTGGGAGGCTATGAGA+AGG	0.562330	5:+76822182	MsaT029417.1:CDS
TTCCTGTCCTTGTATCATCA+GGG	0.567796	5:-76821783	None:intergenic
TCAACATTCACAGGCTCTGG+AGG	0.570563	5:-76824146	None:intergenic
GCTCCTTCATAAAAGCTGCT+TGG	0.572842	5:-76821954	None:intergenic
GGCGGCTGATGCTCATATGT+TGG	0.573754	5:+76821702	MsaT029417.1:CDS
GGAACAGCTGTGGTTGACAT+AGG	0.574547	5:+76825447	MsaT029417.1:CDS
TACCCTTCATTCGGTTGAGG+CGG	0.575922	5:+76821684	MsaT029417.1:CDS
GCCCCTGATGATACAAGGAC+AGG	0.576326	5:+76821781	MsaT029417.1:CDS
AGCCGCCTCAACCGAATGAA+GGG	0.583777	5:-76821686	None:intergenic
CATTCTCCATAAAATTTGGG+AGG	0.584904	5:-76822015	None:intergenic
ATGCCTTTCATAATCAAGAA+GGG	0.589284	5:-76824084	None:intergenic
CATATGTTGGACACAGCTAA+GGG	0.591530	5:+76821715	MsaT029417.1:CDS
TGTCAAAACTGGGAAGGAAG+AGG	0.595392	5:+76821591	MsaT029417.1:CDS
GCCTGTAGATAATGAAAACC+CGG	0.601904	5:+76821858	MsaT029417.1:CDS
AGATGATGTCAAAACTGGGA+AGG	0.611191	5:+76821585	MsaT029417.1:CDS
GAAAACGACAAAGTGGGTCA+GGG	0.611750	5:+76821352	MsaT029417.1:CDS
AAATGAGTCGGGAACAGAAG+AGG	0.612300	5:+76821930	MsaT029417.1:CDS
TAGTCTAGATCAACCCGAAG+AGG	0.623353	5:+76824644	MsaT029417.1:intron
TGCTAGGTCGGGAACAGCTG+TGG	0.627055	5:+76825437	MsaT029417.1:intron
TCCTGTCCTTGTATCATCAG+GGG	0.629902	5:-76821782	None:intergenic
ACAAAAGAAAACGACAAAGT+GGG	0.644226	5:+76821346	MsaT029417.1:CDS
TGAAGATGCTTCTGATGTGA+AGG	0.653690	5:+76821738	MsaT029417.1:CDS
GGCTCTGGAGGAGATGCGAT+AGG	0.659024	5:-76824134	None:intergenic
TCCGGCGAATGTTAATGTAG+AGG	0.660878	5:+76821378	MsaT029417.1:CDS
GAAAGGCATAACATAAAAGG+CGG	0.672469	5:+76824098	MsaT029417.1:CDS
AGATGCTTCTGATGTGAAGG+TGG	0.677639	5:+76821741	MsaT029417.1:CDS
CCGGAAAGTCCAGGAAACTG+TGG	0.685217	5:-76823758	None:intergenic
TGTCAGATGATGTCAAAACT+GGG	0.691161	5:+76821581	MsaT029417.1:CDS
GGATGAAAATGTGAAACCCA+AGG	0.695062	5:+76821624	MsaT029417.1:CDS
GAAGGAAGAGGTGCATGCTG+AGG	0.698279	5:+76821603	MsaT029417.1:CDS
ATAATGCAGTCAAAGCAGCA+CGG	0.717518	5:+76825164	MsaT029417.1:CDS
AGAGCTGTGATGAGATTGGG+AGG	0.730490	5:+76822171	MsaT029417.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	76821337	76825691	76821337	ID=MsaG029417
Chr5	mRNA	76821337	76825691	76821337	ID=MsaT029417.1;Parent=MsaG029417
Chr5	exon	76821337	76822052	76821337	ID=MsaT029417.1.exon1;Parent=MsaT029417.1
Chr5	CDS	76821337	76822052	76821337	ID=cds.MsaT029417.1;Parent=MsaT029417.1
Chr5	exon	76822164	76822232	76822164	ID=MsaT029417.1.exon2;Parent=MsaT029417.1
Chr5	CDS	76822164	76822232	76822164	ID=cds.MsaT029417.1;Parent=MsaT029417.1
Chr5	exon	76823004	76823030	76823004	ID=MsaT029417.1.exon3;Parent=MsaT029417.1
Chr5	CDS	76823004	76823030	76823004	ID=cds.MsaT029417.1;Parent=MsaT029417.1
Chr5	exon	76823750	76823795	76823750	ID=MsaT029417.1.exon4;Parent=MsaT029417.1
Chr5	CDS	76823750	76823795	76823750	ID=cds.MsaT029417.1;Parent=MsaT029417.1
Chr5	exon	76824083	76824175	76824083	ID=MsaT029417.1.exon5;Parent=MsaT029417.1
Chr5	CDS	76824083	76824175	76824083	ID=cds.MsaT029417.1;Parent=MsaT029417.1
Chr5	exon	76824647	76824733	76824647	ID=MsaT029417.1.exon6;Parent=MsaT029417.1
Chr5	CDS	76824647	76824733	76824647	ID=cds.MsaT029417.1;Parent=MsaT029417.1
Chr5	exon	76824976	76825027	76824976	ID=MsaT029417.1.exon7;Parent=MsaT029417.1
Chr5	CDS	76824976	76825027	76824976	ID=cds.MsaT029417.1;Parent=MsaT029417.1
Chr5	exon	76825131	76825206	76825131	ID=MsaT029417.1.exon8;Parent=MsaT029417.1
Chr5	CDS	76825131	76825206	76825131	ID=cds.MsaT029417.1;Parent=MsaT029417.1
Chr5	exon	76825443	76825509	76825443	ID=MsaT029417.1.exon9;Parent=MsaT029417.1
Chr5	CDS	76825443	76825509	76825443	ID=cds.MsaT029417.1;Parent=MsaT029417.1
Chr5	exon	76825596	76825691	76825596	ID=MsaT029417.1.exon10;Parent=MsaT029417.1
Chr5	CDS	76825596	76825691	76825596	ID=cds.MsaT029417.1;Parent=MsaT029417.1

Gene Sequence

>MsaT029417.1

ATGAGTGATACAAAAGAAAACGACAAAGTGGGTCAGGGTGTTCCGGCGAATGTTAATGTAGAGGAAGCTGACCATGTCATTGGTGAAAATGAAAATTCAAAACTAGGAGATGATCATGAGATGATTATTGATAATCTTGCTGGTTTGGAATTAGGAGATGATCATGAGATGATTATTGTTCAAGAGATGCATCTTGAAGTTCAACCGGTTACTGTAGAGGAAACTTCAAAGAATGTTGAAAATGTGTCAGATGATGTCAAAACTGGGAAGGAAGAGGTGCATGCTGAGGATGAAAATGTGAAACCCAAGGTTGTTTCAGAAGGTATTTCACAAGAAAATGTTCAAGATACCCTTCATTCGGTTGAGGCGGCTGATGCTCATATGTTGGACACAGCTAAGGGTGAAGATGCTTCTGATGTGAAGGTGGACGCCAAAAAACTTCCTGCCCCTGATGATACAAGGACAGGAATTAAGAATGTTTTAGAAGTTGAAAGTAAGGACGGTGAAGAGCAAGTTGCTGAGCCTGTAGATAATGAAAACCCGGATTCGCAGCAGAACATGTTTTTCTTGGATGCTGATCATTATTATGATGGAAATGAGTCGGGAACAGAAGAGGACCAAGCAGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGTATGGACTTCAAACCTCCCAAATTTTATGGAGAATGGCTTAATTGCCTTAAGTTATGGAGAGCTGTGATGAGATTGGGAGGCTATGAGAAGGTATTCATTTATTTTTTCCTTTCTATTATTGTGGGAGAGTCTTTCAAACTCCCAAAGACTTGCACCACAGTTTCCTGGACTTTCCGGAGATTTTATGAGAAGGCCCTTCTTGATTATGAAAGGCATAACATAAAAGGCGGCGATCTGAATGTACCTATCGCATCTCCTCCAGAGCCTGTGAATGTTGAAAATCAGTCTAGATCAACCCGAAGAGGTATGCATAAAAGTATTTTCCCCCAAGGCAAAATCCGAGAACTCCTTCTATTTTCTGGGTTTGGAAAAGATAGGAATGCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAGAGCATCAATGTACCTAAACGTAAGAGCCCATCTTATATGGATAATGCAGTCAAAGCAGCACGGAGTAAACCTTCAAGACCACAGTCGGGAACAGCTGTGGTTGACATAGGACCTTCTGCTGATTGGGTAAAAGTCAATGTTCAAAAAACTAAAGATTGTTTCGAAATATATGCTTTAGTTCCTGGCCTTCTGCGGGAGGAGGTTGGAGAATGCCGAGAAGAAGAAGAAGAAGAAGGAAGCAAGTAA

Protein sequence

>MsaT029417.1

MSDTKENDKVGQGVPANVNVEEADHVIGENENSKLGDDHEMIIDNLAGLELGDDHEMIIVQEMHLEVQPVTVEETSKNVENVSDDVKTGKEEVHAEDENVKPKVVSEGISQENVQDTLHSVEAADAHMLDTAKGEDASDVKVDAKKLPAPDDTRTGIKNVLEVESKDGEEQVAEPVDNENPDSQQNMFFLDADHYYDGNESGTEEDQAAFMKELENFFRERSMDFKPPKFYGEWLNCLKLWRAVMRLGGYEKVFIYFFLSIIVGESFKLPKTCTTVSWTFRRFYEKALLDYERHNIKGGDLNVPIASPPEPVNVENQSRSTRRGMHKSIFPQGKIRELLLFSGFGKDRNAVSVQKREKQLKSINVPKRKSPSYMDNAVKAARSKPSRPQSGTAVVDIGPSADWVKVNVQKTKDCFEIYALVPGLLREEVGECREEEEEEGSK*