AlfalfaGEDB | MsaG029449

M. sativa ssp. caerulea / MsaG029449

KEGG: K13412
GO: -
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029449	XP_003617547.2	96.852	540	14	2	1	537	1	540	0.0	1092

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029449	sp\|Q38868\|CDPK9_ARATH	73.188	552	122	5	1	537	1	541	0.0	830

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029449	tr\|G7K8K5\|G7K8K5_MEDTR	96.852	540	14	2	1	537	1	540	0.0	1092

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG029449	MtrunA17_Chr5g0444171	96.852	540	14	2	1	537	1	540	1092
MsaG029449	MtrunA17_Chr3g0098951	80.254	552	80	8	1	537	1	538	890
MsaG029449	MtrunA17_Chr4g0074811	79.051	506	102	1	32	537	38	539	848
MsaG029449	MtrunA17_Chr1g0157131	73.187	455	122	0	76	530	61	515	729
MsaG029449	MtrunA17_Chr8g0387671	67.546	493	147	2	47	529	17	506	705
MsaG029449	MtrunA17_Chr5g0441691	63.138	529	174	3	1	529	1	508	697
MsaG029449	MtrunA17_Chr5g0397101	69.375	480	140	3	50	529	34	506	691
MsaG029449	MtrunA17_Chr0c02g0489761	68.094	467	148	1	63	529	53	518	682
MsaG029449	MtrunA17_Chr4g0074791	65.339	502	151	6	42	537	49	533	674
MsaG029449	MtrunA17_Chr5g0448721	63.797	453	163	1	77	529	84	535	617

Showing 1 to 10 of 295 entries

Previous1 2 3 4 5…30Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG029449	AT3G20410.2	73.188	552	122	5	1	537	1	541	830
MsaG029449	AT3G20410.1	73.188	552	122	5	1	537	1	541	830
MsaG029449	AT1G50700.1	73.557	537	126	2	1	537	1	521	824
MsaG029449	AT1G50700.2	70.160	563	126	3	1	537	1	547	809
MsaG029449	AT4G04720.2	76.553	499	113	4	42	537	31	528	800
MsaG029449	AT4G04720.1	76.553	499	113	4	42	537	31	528	800
MsaG029449	AT4G21940.1	70.109	552	146	6	3	537	2	551	794
MsaG029449	AT4G21940.2	70.109	552	146	6	3	537	2	551	793
MsaG029449	AT1G61950.1	70.624	497	130	5	53	536	54	547	739
MsaG029449	AT1G50700.3	73.542	480	111	2	1	480	1	464	732

Showing 1 to 10 of 505 entries

Previous1 2 3 4 5…51Next

Find 101 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCAGTTCATGTTGTTA+TGG	0.340613	5:+77246341	MsaT029449.1:CDS
AAAGTATATCGGGATATAGT+TGG	0.472066	5:+77247593	MsaT029449.1:CDS
AAATTTCTTGTTGTCTAGTA+AGG	0.366128	5:+77246512	MsaT029449.1:CDS
AACATGGACACTGACAAAAG+TGG	0.627993	5:+77249042	MsaT029449.1:CDS
AACCGACAAGCCGAAATCAG+TGG	0.648079	5:-77246556	None:intergenic
AAGAGATGAGCATCTTTACA+AGG	0.602521	5:+77249310	MsaT029449.1:CDS
AAGCATATCAAACAGTGCTA+AGG	0.599621	5:+77247895	MsaT029449.1:CDS
AAGTGGTACAATCACATATG+AGG	0.521768	5:+77249059	MsaT029449.1:CDS
AAGTTCTACGCCGTAAATAT+GGG	0.479594	5:+77247639	MsaT029449.1:CDS
AATCACATATGAGGAATTAA+GGG	0.464140	5:+77249068	MsaT029449.1:CDS

Showing 1 to 10 of 101 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	77245862	77249958	77245862	ID=MsaG029449
Chr5	mRNA	77245862	77249958	77245862	ID=MsaT029449.1;Parent=MsaG029449
Chr5	exon	77245862	77246591	77245862	ID=MsaT029449.1.exon1;Parent=MsaT029449.1
Chr5	CDS	77245862	77246591	77245862	ID=cds.MsaT029449.1;Parent=MsaT029449.1
Chr5	exon	77247591	77247734	77247591	ID=MsaT029449.1.exon2;Parent=MsaT029449.1
Chr5	CDS	77247591	77247734	77247591	ID=cds.MsaT029449.1;Parent=MsaT029449.1
Chr5	exon	77247828	77247980	77247828	ID=MsaT029449.1.exon3;Parent=MsaT029449.1
Chr5	CDS	77247828	77247980	77247828	ID=cds.MsaT029449.1;Parent=MsaT029449.1
Chr5	exon	77248208	77248323	77248208	ID=MsaT029449.1.exon4;Parent=MsaT029449.1
Chr5	CDS	77248208	77248323	77248208	ID=cds.MsaT029449.1;Parent=MsaT029449.1
Chr5	exon	77248985	77249152	77248985	ID=MsaT029449.1.exon5;Parent=MsaT029449.1
Chr5	CDS	77248985	77249152	77248985	ID=cds.MsaT029449.1;Parent=MsaT029449.1
Chr5	exon	77249236	77249363	77249236	ID=MsaT029449.1.exon6;Parent=MsaT029449.1
Chr5	CDS	77249236	77249363	77249236	ID=cds.MsaT029449.1;Parent=MsaT029449.1
Chr5	exon	77249534	77249633	77249534	ID=MsaT029449.1.exon7;Parent=MsaT029449.1
Chr5	CDS	77249534	77249633	77249534	ID=cds.MsaT029449.1;Parent=MsaT029449.1
Chr5	exon	77249884	77249958	77249884	ID=MsaT029449.1.exon8;Parent=MsaT029449.1
Chr5	CDS	77249884	77249958	77249884	ID=cds.MsaT029449.1;Parent=MsaT029449.1

Gene Sequence

>MsaT029449.1

ATGGGTGGTTGTTTGAGTAAAAAGGAATCAGAGCCAGATCATAGACATGTTGGTGTTTCTGGTATGCACAATCATAATCACAATCACAATCATAATCATAATCACAATCACAAGAATCATGAACCTTATTTGAATCAATCAAAAACCCCTTCTCAACAACCTTACCAATTACCAAACAAACATGCCCCAAGTCCAAAACCAAATGTTCAAAGATCAAATGAAAACACAATTCTTGGTAAACAATTTGAAGATGTGAAACAAGTTTACACACTTGGGAAAGAATTAGGAAGAGGACAATTTGGTGTGACTTATCTTTGTACTGAGAATTCAACTGGATTGAAATATGCATGCAAATCAATTTCAAAGAGGAAACTTGTTAGTAAATCTGATAAAGAAGATATAAAGAGGGAGATTCAAATCATGCAACATATGAGTGGACAACCAAATATTGTTGAGTTTAAAGGTGCTTATGAGGATAAAAACTCAGTTCATGTTGTTATGGAACTTTGTGCTGGTGGTGAACTTTTTGACAGGATTATTGCTAAGGGAAAGTATAGTGAAAGAGCTGCAGCTTCAATTTGTAGACAAATTGTTAATGTTGTTCATATTTGTCATTTTATGGGTGTGATGCATAGAGATTTGAAGCCAGAAAATTTCTTGTTGTCTAGTAAGGATGATAAGGCAACTATCAAGGCCACTGATTTCGGCTTGTCGGTTTTCATCGAAGAAGGAAAAGTATATCGGGATATAGTTGGCAGTGCTTATTATGTTGCGCCAGAAGTTCTACGCCGTAAATATGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATATTGTACATCTTACTTTGTGGTGTGCCTCCATTTTGGGCAGAGACGGAAAAGGGAATATTTGATGCCATATTGCAAGGTCATGTTGACTTTGAAAGTCGTCCATGGCCAAGCATATCAAACAGTGCTAAGGATCTTGTTAGTAGGATGCTTACACAAGATCCAAAGAAACGTATCACAGCTTCTCAGGTTCTAGATCACCCTTGGCTTAAAGAAGGTGGAAATGCTTCCGACAAACCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCGATGAATAAACTAAAAAAACTCGCCCTCAAGGTTATTGCTGAGAATCTTTCTTCAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAACATGGACACTGACAAAAGTGGTACAATCACATATGAGGAATTAAGGGCAGGATTGCAAAGACTCGGTTCAAAGCTTACTGAAGCGGAAGTGCGGCAGCTTATGGAAGCTGCTGATGTAGATGGAAATGGAACAATTGACTACATAGAATTCATCACCGCGACAATGCACAGACACCGGTTAGAAAGAGATGAGCATCTTTACAAGGCCTTCCAATATTTTGATAAAGACAATAGTGGTTTTATTACAAGAGATGAACTGGAAACAGCCATGAAAGAATACGGTATGGGCGACGAAGACACAATCAGGGAAATCATATCGGAAGTTGATACGGATAATGATGGTAGAATTAACTATGAAGAATTTTGTGCAATGATGAGGAGTGGAGTCCAACAACAAGGCAAGCTATTCTAA

Protein sequence

>MsaT029449.1

MGGCLSKKESEPDHRHVGVSGMHNHNHNHNHNHNHNHKNHEPYLNQSKTPSQQPYQLPNKHAPSPKPNVQRSNENTILGKQFEDVKQVYTLGKELGRGQFGVTYLCTENSTGLKYACKSISKRKLVSKSDKEDIKREIQIMQHMSGQPNIVEFKGAYEDKNSVHVVMELCAGGELFDRIIAKGKYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDDKATIKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRKYGKEIDIWSAGVILYILLCGVPPFWAETEKGIFDAILQGHVDFESRPWPSISNSAKDLVSRMLTQDPKKRITASQVLDHPWLKEGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSSEEIQGLKAMFTNMDTDKSGTITYEELRAGLQRLGSKLTEAEVRQLMEAADVDGNGTIDYIEFITATMHRHRLERDEHLYKAFQYFDKDNSGFITRDELETAMKEYGMGDEDTIREIISEVDTDNDGRINYEEFCAMMRSGVQQQGKLF*