AlfalfaGEDB | MsaG029483

M. sativa ssp. caerulea / MsaG029483

KEGG: K12606 K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029483	XP_024627301.1	87.075	147	17	1	64	208	12	158	7.93e-76	239

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029483	sp\|Q6P819\|CNOT9_XENTR	64.463	121	43	0	85	205	28	148	4.99e-47	159

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029483	tr\|A0A396GV60\|A0A396GV60_MEDTR	87.075	147	17	1	64	208	12	158	6.68e-75	237

TFs/TRs:

Gene ID	Type	Classification
MsaG029483	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000192	MsaG029483	0.821187	8.104481e-53	1.839382e-50
MsaG000458	MsaG029483	0.843162	3.095443e-58	1.336041e-55
MsaG000476	MsaG029483	0.806804	1.168254e-49	1.847719e-47
MsaG000578	MsaG029483	0.861856	1.510539e-63	1.260646e-60
MsaG000687	MsaG029483	0.824334	1.511633e-53	3.734200e-51
MsaG001001	MsaG029483	0.898645	9.899906e-77	4.678897e-73
MsaG001086	MsaG029483	0.812803	6.069135e-51	1.110317e-48
MsaG002273	MsaG029483	0.808081	6.278415e-50	1.023730e-47
MsaG002458	MsaG029483	0.833184	1.118195e-55	3.549220e-53
MsaG002866	MsaG029483	0.802297	1.007261e-48	1.434649e-46
MsaG003192	MsaG029483	0.815528	1.529359e-51	2.996067e-49
MsaG003535	MsaG029483	0.821450	7.051886e-53	1.611606e-50
MsaG003929	MsaG029483	0.803705	5.170268e-49	7.606593e-47
MsaG004012	MsaG029483	0.824094	1.720287e-53	4.221772e-51
MsaG004185	MsaG029483	0.835345	3.229954e-56	1.093133e-53
MsaG004479	MsaG029483	0.853341	4.899768e-61	2.983539e-58
MsaG004641	MsaG029483	0.814240	2.942255e-51	5.579912e-49
MsaG004648	MsaG029483	0.837347	1.005797e-56	3.615600e-54
MsaG004760	MsaG029483	0.818199	3.871389e-52	8.122056e-50
MsaG004798	MsaG029483	0.813140	5.124652e-51	9.454322e-49
MsaG004976	MsaG029483	0.849999	4.289560e-60	2.324784e-57
MsaG005018	MsaG029483	0.849239	6.974884e-60	3.683531e-57
MsaG005092	MsaG029483	0.805095	2.662230e-49	4.044955e-47
MsaG005274	MsaG029483	0.845345	8.075300e-59	3.742481e-56
MsaG005277	MsaG029483	0.828353	1.686056e-54	4.656826e-52
MsaG005354	MsaG029483	0.808742	4.545968e-50	7.531530e-48
MsaG005442	MsaG029483	0.800912	1.930659e-48	2.664621e-46
MsaG005683	MsaG029483	0.803896	4.719628e-49	6.974263e-47
MsaG006133	MsaG029483	0.855800	9.587214e-62	6.375189e-59
MsaG006177	MsaG029483	0.819702	1.769443e-52	3.860876e-50
MsaG006274	MsaG029483	0.831758	2.513926e-55	7.654453e-53
MsaG006330	MsaG029483	0.814419	2.687207e-51	5.119259e-49
MsaG006774	MsaG029483	0.819753	1.722164e-52	3.762736e-50
MsaG006898	MsaG029483	0.806916	1.106332e-49	1.754393e-47
MsaG006886	MsaG029483	0.820383	1.238004e-52	2.750572e-50
MsaG007000	MsaG029483	0.824621	1.295470e-53	3.225067e-51
MsaG006998	MsaG029483	0.816506	9.269797e-52	1.861779e-49
MsaG007145	MsaG029483	0.829812	7.497909e-55	2.158257e-52
MsaG007168	MsaG029483	0.836546	1.607205e-56	5.639174e-54
MsaG007215	MsaG029483	0.805720	1.970875e-49	3.038478e-47
MsaG007287	MsaG029483	0.832554	1.601260e-55	4.989208e-53
MsaG007558	MsaG029483	0.827151	3.268697e-54	8.728218e-52
MsaG008525	MsaG029483	0.846615	3.660754e-59	1.769546e-56
MsaG009265	MsaG029483	0.823514	2.348858e-53	5.674373e-51
MsaG009477	MsaG029483	0.855437	1.221914e-61	8.019699e-59
MsaG009504	MsaG029483	0.808378	5.431072e-50	8.918939e-48
MsaG009703	MsaG029483	0.823898	1.912213e-53	4.667721e-51
MsaG009787	MsaG029483	0.831528	2.862590e-55	8.656982e-53
MsaG010066	MsaG029483	0.810306	2.105507e-50	3.622528e-48
MsaG010508	MsaG029483	0.808561	4.966789e-50	8.192622e-48
MsaG010571	MsaG029483	0.803843	4.840228e-49	7.143784e-47
MsaG010592	MsaG029483	0.806366	1.443909e-49	2.260302e-47
MsaG010667	MsaG029483	0.806961	1.082497e-49	1.718449e-47
MsaG010768	MsaG029483	0.816418	9.698620e-52	1.943498e-49
MsaG011039	MsaG029483	0.816750	8.178053e-52	1.652864e-49
MsaG011314	MsaG029483	0.807825	7.112423e-50	1.152608e-47
MsaG011357	MsaG029483	0.848614	1.038081e-59	5.366558e-57
MsaG011596	MsaG029483	0.810802	1.647278e-50	2.868629e-48
MsaG012170	MsaG029483	0.887126	4.073844e-72	1.036428e-68
MsaG012561	MsaG029483	0.813871	3.546063e-51	6.663107e-49
MsaG012893	MsaG029483	0.804818	3.039343e-49	4.588468e-47
MsaG013917	MsaG029483	0.812214	8.151095e-51	1.469486e-48
MsaG013962	MsaG029483	0.800057	2.878576e-48	3.897087e-46
MsaG014439	MsaG029483	0.800699	2.133287e-48	2.930335e-46
MsaG015081	MsaG029483	0.866726	4.642194e-65	4.701466e-62
MsaG015082	MsaG029483	0.800847	1.990747e-48	2.743527e-46
MsaG015176	MsaG029483	0.843169	3.080985e-58	1.330130e-55
MsaG015216	MsaG029483	0.831452	2.988079e-55	9.016321e-53
MsaG015184	MsaG029483	0.803776	4.997263e-49	7.364149e-47
MsaG015689	MsaG029483	0.808899	4.209062e-50	6.999611e-48
MsaG016293	MsaG029483	0.813760	3.750723e-51	7.027972e-49
MsaG016571	MsaG029483	0.864291	2.693252e-64	2.473680e-61
MsaG016674	MsaG029483	0.864730	1.965879e-64	1.837403e-61
MsaG016882	MsaG029483	0.860222	4.718552e-63	3.700335e-60
MsaG017269	MsaG029483	0.810540	1.874808e-50	3.244143e-48
MsaG017772	MsaG029483	0.805626	2.062580e-49	3.172850e-47
MsaG017798	MsaG029483	0.802891	7.607109e-49	1.098299e-46
MsaG018111	MsaG029483	0.825035	1.035707e-53	2.607861e-51
MsaG018123	MsaG029483	0.845389	7.857590e-59	3.647076e-56
MsaG018290	MsaG029483	0.812241	8.044975e-51	1.451271e-48
MsaG018565	MsaG029483	0.837860	7.437294e-57	2.715878e-54
MsaG018636	MsaG029483	0.833456	9.576874e-56	3.063973e-53
MsaG018712	MsaG029483	0.813749	3.770118e-51	7.062474e-49
MsaG018821	MsaG029483	0.804727	3.174775e-49	4.782700e-47
MsaG018961	MsaG029483	0.818338	3.601605e-52	7.583122e-50
MsaG019221	MsaG029483	0.841742	7.333744e-58	3.024637e-55
MsaG019265	MsaG029483	0.862374	1.050221e-63	8.942897e-61
MsaG019628	MsaG029483	0.808898	4.211699e-50	7.003771e-48
MsaG019862	MsaG029483	0.834540	5.140331e-56	1.698288e-53
MsaG020029	MsaG029483	0.814051	3.236557e-51	6.108969e-49
MsaG020296	MsaG029483	0.835828	2.441157e-56	8.382068e-54
MsaG020338	MsaG029483	0.814738	2.285579e-51	4.389053e-49
MsaG020487	MsaG029483	0.830675	4.627505e-55	1.365248e-52
MsaG020828	MsaG029483	0.812130	8.504669e-51	1.529987e-48
MsaG020874	MsaG029483	0.808759	4.507565e-50	7.470884e-48
MsaG020875	MsaG029483	0.801246	1.651683e-48	2.296796e-46
MsaG021238	MsaG029483	0.818611	3.124839e-52	6.626297e-50
MsaG021286	MsaG029483	0.808661	4.729605e-50	7.820378e-48
MsaG021553	MsaG029483	0.859240	9.290118e-63	7.018196e-60
MsaG021665	MsaG029483	0.804931	2.879253e-49	4.358110e-47
MsaG022116	MsaG029483	0.802133	1.088013e-48	1.543807e-46
MsaG022079	MsaG029483	0.800944	1.902308e-48	2.627386e-46
MsaG022243	MsaG029483	0.832017	2.171319e-55	6.661224e-53
MsaG023133	MsaG029483	0.826957	3.635855e-54	9.656385e-52
MsaG023396	MsaG029483	0.810910	1.561322e-50	2.726065e-48
MsaG023762	MsaG029483	0.824165	1.656463e-53	4.072794e-51
MsaG026721	MsaG029483	0.828733	1.366676e-54	3.814836e-52
MsaG026841	MsaG029483	0.839738	2.444046e-57	9.462776e-55
MsaG026863	MsaG029483	0.807238	9.463110e-50	1.512108e-47
MsaG027093	MsaG029483	0.802908	7.547490e-49	1.090109e-46
MsaG027361	MsaG029483	0.801371	1.557471e-48	2.171995e-46
MsaG027650	MsaG029483	0.806879	1.126267e-49	1.784499e-47
MsaG027749	MsaG029483	0.820563	1.125798e-52	2.513185e-50
MsaG028634	MsaG029483	0.806868	1.132663e-49	1.794124e-47
MsaG028758	MsaG029483	0.823783	2.034076e-53	4.949917e-51
MsaG028855	MsaG029483	0.813510	4.252801e-51	7.919152e-49
MsaG028951	MsaG029483	0.806059	1.674316e-49	2.601958e-47
MsaG029232	MsaG029483	0.804839	3.008915e-49	4.544748e-47
MsaG029335	MsaG029483	0.839486	2.839487e-57	1.090742e-54
MsaG029483	MsaG029567	0.806535	1.330574e-49	2.091234e-47
MsaG029483	MsaG029593	0.800296	2.574718e-48	3.504451e-46
MsaG029483	MsaG029704	0.820930	9.280749e-53	2.092039e-50
MsaG029483	MsaG029745	0.828924	1.229007e-54	3.449070e-52
MsaG029483	MsaG029763	0.816658	8.573811e-52	1.728678e-49
MsaG029483	MsaG029829	0.823542	2.314026e-53	5.594488e-51
MsaG029483	MsaG029863	0.819376	2.097917e-52	4.538880e-50
MsaG029483	MsaG030359	0.833381	9.991112e-56	3.189478e-53
MsaG029483	MsaG030546	0.824618	1.297257e-53	3.229273e-51
MsaG029483	MsaG030679	0.803143	6.752064e-49	9.805317e-47
MsaG029483	MsaG030801	0.809194	3.641416e-50	6.098553e-48
MsaG029483	MsaG031062	0.800010	2.941817e-48	3.978599e-46
MsaG029483	MsaG031652	0.812465	7.190185e-51	1.304410e-48
MsaG029483	MsaG032062	0.802487	9.206078e-49	1.316952e-46
MsaG029483	MsaG033613	0.801349	1.573425e-48	2.193163e-46
MsaG029483	MsaG034079	0.814708	2.320594e-51	4.452924e-49
MsaG029483	MsaG034837	0.802145	1.082133e-48	1.535868e-46
MsaG029483	MsaG034946	0.800454	2.392677e-48	3.268357e-46
MsaG029483	MsaG034996	0.812589	6.756140e-51	1.229456e-48
MsaG029483	MsaG035054	0.806437	1.394973e-49	2.187451e-47
MsaG029483	MsaG035529	0.853425	4.635532e-61	2.831322e-58
MsaG029483	MsaG035860	0.825913	6.429625e-54	1.658809e-51
MsaG029483	MsaG036324	0.820658	1.071154e-52	2.397130e-50
MsaG029483	MsaG036973	0.817297	6.170217e-52	1.264814e-49
MsaG029483	MsaG037910	0.831103	3.637021e-55	1.086369e-52
MsaG029483	MsaG039160	0.847218	2.507984e-59	1.237186e-56
MsaG029483	MsaG040026	0.830540	4.991558e-55	1.466974e-52
MsaG029483	MsaG040350	0.809495	3.140038e-50	5.297601e-48
MsaG029483	MsaG040425	0.832683	1.488015e-55	4.653668e-53
MsaG029483	MsaG040546	0.840804	1.291594e-57	5.170772e-55
MsaG029483	MsaG040649	0.806392	1.425617e-49	2.233067e-47
MsaG029483	MsaG040669	0.824957	1.080115e-53	2.713873e-51
MsaG029483	MsaG041112	0.815520	1.535350e-51	3.007222e-49
MsaG029483	MsaG041285	0.824507	1.377431e-53	3.418595e-51
MsaG029483	MsaG041335	0.808550	4.993056e-50	8.233727e-48
MsaG029483	MsaG042898	0.807477	8.426819e-50	1.354220e-47
MsaG029483	MsaG042968	0.808404	5.362805e-50	8.812183e-48
MsaG029483	MsaG043000	0.804980	2.813062e-49	4.262721e-47
MsaG029483	MsaG043177	0.826109	5.777782e-54	1.498760e-51
MsaG029483	MsaG043227	0.848505	1.112503e-59	5.729564e-57
MsaG029483	MsaG044002	0.806899	1.115557e-49	1.768340e-47
MsaG029483	MsaG044333	0.817131	6.723269e-52	1.372264e-49
MsaG029483	MsaG044411	0.831962	2.239451e-55	6.859154e-53
MsaG029483	MsaG044386	0.835399	3.130474e-56	1.061170e-53
MsaG029483	MsaG044387	0.832203	1.953964e-55	6.026516e-53
MsaG029483	MsaG044501	0.832831	1.367691e-55	4.295941e-53
MsaG029483	MsaG044885	0.848834	9.028345e-60	4.702035e-57
MsaG029483	MsaG044934	0.803915	4.676757e-49	6.914087e-47
MsaG029483	MsaG045021	0.813233	4.889837e-51	9.042344e-49
MsaG029483	MsaG045072	0.837228	1.078240e-56	3.862027e-54
MsaG029483	MsaG045078	0.864151	2.976163e-64	2.718255e-61
MsaG029483	MsaG045106	0.803624	5.371978e-49	7.888388e-47
MsaG029483	MsaG045109	0.840037	2.044559e-57	7.990926e-55
MsaG029483	MsaG045403	0.810904	1.565656e-50	2.733266e-48
MsaG029483	MsaG045404	0.806284	1.502378e-49	2.347298e-47
MsaG029483	MsaG045536	0.827247	3.101351e-54	8.303655e-52
MsaG029483	MsaG045576	0.818582	3.172379e-52	6.721931e-50
MsaG029483	MsaG045810	0.806178	1.580736e-49	2.463514e-47
MsaG029483	MsaG045974	0.847218	2.507984e-59	1.237186e-56
MsaG029483	MsaG046126	0.883255	1.119744e-70	2.356949e-67
MsaG029483	MsaG046226	0.851481	1.649553e-60	9.409488e-58
MsaG029483	MsaG046251	0.821115	8.416526e-53	1.906530e-50
MsaG029483	MsaG046430	0.820238	1.336059e-52	2.957171e-50
MsaG029483	MsaG046554	0.800539	2.298928e-48	3.146371e-46
MsaG029483	MsaG046703	0.803519	5.648137e-49	8.273948e-47
MsaG029483	MsaG046746	0.830704	4.551813e-55	1.344020e-52
MsaG029483	MsaG046802	0.877414	1.338087e-68	2.143839e-65
MsaG029483	MsaG046862	0.808513	5.084888e-50	8.377672e-48
MsaG029483	MsaG047067	0.800814	2.021925e-48	2.784450e-46
MsaG029483	MsaG047194	0.806891	1.120122e-49	1.775208e-47
MsaG029483	MsaG002437	0.801817	1.262889e-48	1.779166e-46
MsaG029483	MsaG000837	0.857313	3.459300e-62	2.431555e-59
MsaG029483	MsaG001986	0.816068	1.160367e-51	2.304590e-49
MsaG029483	MsaG002984	0.812117	8.559108e-51	1.539308e-48
MsaG029483	MsaG002433	0.823206	2.769838e-53	6.635711e-51
MsaG029483	MsaG003009	0.810442	1.968338e-50	3.397913e-48
MsaG029483	MsaG003742	0.845931	5.609001e-59	2.650358e-56
MsaG029483	MsaG008854	0.866338	6.158174e-65	6.137909e-62
MsaG029483	MsaG007366	0.831529	2.860526e-55	8.651077e-53
MsaG029483	MsaG013401	0.821281	7.709258e-53	1.754078e-50
MsaG029483	MsaG015244	0.895437	2.160136e-75	8.518163e-72
MsaG029483	MsaG013406	0.822933	3.205449e-53	7.622898e-51
MsaG029483	MsaG014449	0.834473	5.342854e-56	1.761716e-53
MsaG029483	MsaG014358	0.821280	7.713952e-53	1.755092e-50
MsaG029483	MsaG011654	0.824810	1.169461e-53	2.926539e-51
MsaG029483	MsaG014180	0.827409	2.836909e-54	7.630274e-52
MsaG029483	MsaG014177	0.816076	1.155824e-51	2.296030e-49
MsaG029483	MsaG013405	0.819071	2.459318e-52	5.278318e-50
MsaG029483	MsaG013372	0.821823	5.785945e-53	1.335479e-50
MsaG029483	MsaG015300	0.822153	4.858213e-53	1.131286e-50
MsaG029483	MsaG011352	0.809698	2.841884e-50	4.817859e-48
MsaG029483	MsaG013014	0.813057	5.343184e-51	9.837423e-49
MsaG029483	MsaG019027	0.815776	1.346947e-51	2.655383e-49
MsaG029483	MsaG026431	0.815963	1.224256e-51	2.425089e-49
MsaG029483	MsaG029575	0.816013	1.193448e-51	2.366983e-49
MsaG029483	MsaG028127	0.815052	1.948230e-51	3.770976e-49
MsaG029483	MsaG032410	0.817712	4.981996e-52	1.032118e-49
MsaG029483	MsaG032342	0.836809	1.377919e-56	4.873222e-54
MsaG029483	MsaG030924	0.832474	1.674953e-55	5.206811e-53
MsaG029483	MsaG031734	0.826541	4.566332e-54	1.198746e-51
MsaG029483	MsaG030190	0.838803	4.261391e-57	1.602468e-54
MsaG029483	MsaG031290	0.816116	1.132379e-51	2.251759e-49
MsaG029483	MsaG030000	0.811562	1.128647e-50	2.002417e-48
MsaG029483	MsaG040848	0.847191	2.550630e-59	1.257028e-56
MsaG029483	MsaG036784	0.875005	8.968230e-68	1.289993e-64
MsaG029483	MsaG036873	0.844414	1.436103e-58	6.454516e-56
MsaG029483	MsaG037271	0.829189	1.061046e-54	2.999985e-52
MsaG029483	MsaG037249	0.811860	9.730028e-51	1.738953e-48
MsaG029483	MsaG037156	0.833161	1.133376e-55	3.595002e-53
MsaG029483	MsaG040777	0.830287	5.748798e-55	1.677469e-52
MsaG029483	MsaG038711	0.866751	4.555725e-65	4.618768e-62
MsaG029483	MsaG036671	0.815112	1.889620e-51	3.663056e-49
MsaG029483	MsaG036984	0.802860	7.718229e-49	1.113549e-46
MsaG029483	MsaG044032	0.832780	1.408054e-55	4.416322e-53
MsaG029483	MsaG042524	0.854674	2.030295e-61	1.296438e-58
MsaG029483	MsaG042698	0.863425	4.992812e-64	4.431192e-61
MsaG029483	MsaG042234	0.808917	4.172314e-50	6.941416e-48
MsaG029483	MsaG042299	0.835530	2.901331e-56	9.873988e-54

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029483	MtrunA17_Chr7g0224601	87.075	147	17	1	64	208	12	158	1.29e-78	237
MsaG029483	MtrunA17_Chr8g0392781	72.535	142	39	0	64	205	22	163	9.59e-64	201
MsaG029483	MtrunA17_Chr1g0177151	68.310	142	45	0	66	207	20	161	5.08e-62	194
MsaG029483	MtrunA17_Chr3g0099561	74.603	126	32	0	80	205	26	151	5.37e-58	185
MsaG029483	MtrunA17_Chr6g0477171	71.429	105	30	0	101	205	45	149	1.23e-42	144
MsaG029483	MtrunA17_Chr3g0083821	60.909	110	39	1	96	205	14	119	5.85e-39	130
MsaG029483	MtrunA17_Chr5g0444621	75.581	86	21	0	120	205	60	145	1.54e-37	131
MsaG029483	MtrunA17_Chr5g0444631	84.615	52	8	0	154	205	4	55	4.59e-26	95.5
MsaG029483	MtrunA17_Chr6g0477181	81.579	38	7	0	64	101	22	59	1.12e-13	64.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029483	AT3G20800.1	65.734	143	49	0	63	205	22	164	1.32e-56	182
MsaG029483	AT5G12980.1	62.879	132	49	0	74	205	29	160	4.83e-51	167
MsaG029483	AT2G32550.2	40.517	116	64	1	95	205	67	182	2.15e-14	70.9
MsaG029483	AT2G32550.3	41.905	105	56	1	106	205	39	143	7.27e-14	68.9

Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAGACCTTGCACCTTTATTA+TGG	0.198406	5:-77625740	MsaT029483.1:CDS
CAAGTCTTAAATGCTCAAAT+TGG	0.237750	5:+77621039	None:intergenic
AACTCAGCAATCCTGATCTA+AGG	0.276656	5:-77627258	MsaT029483.1:CDS
CCTTTATTATGGAATTCTTA+TGG	0.279542	5:-77625729	MsaT029483.1:CDS
CAATGTTCTGGCACTACTTC+AGG	0.316358	5:-77621638	MsaT029483.1:intron
AGTTGTTGCGGCTGGATTGC+TGG	0.331413	5:-77634459	MsaT029483.1:intron
CCATAAGAATTCCATAATAA+AGG	0.371929	5:+77625729	None:intergenic
CATAATAAAGGTGCAAGGTC+TGG	0.376558	5:+77625741	None:intergenic
AAGGTTGACGTCGTTCTTCA+AGG	0.407633	5:-77634077	MsaT029483.1:intron
CATTTAAGACTTGCTAGTCT+TGG	0.419357	5:-77621029	MsaT029483.1:CDS
CTAACTCGCTTGTCGTTTGA+AGG	0.424446	5:+77621063	None:intergenic
TTGTGCAGTGGTGCTAGATT+GGG	0.436163	5:+77627312	None:intergenic
TCGCTTGTCGTTTGAAGGAA+TGG	0.449153	5:+77621068	None:intergenic
TTTGTGCAGTGGTGCTAGAT+TGG	0.458174	5:+77627311	None:intergenic
AACTCGTGTGTGCAATGTTC+TGG	0.463403	5:-77621650	MsaT029483.1:CDS
TGTGCTGGAGTTGTTGCGGC+TGG	0.480169	5:-77634467	MsaT029483.1:CDS
CTGGCGGTCAAGCATCGGCT+TGG	0.481552	5:-77634129	MsaT029483.1:CDS
TGCTCTTCGTGTTCTCTCCA+AGG	0.482455	5:-77627230	MsaT029483.1:intron
CCTCTCTGGCGGTCAAGCAT+CGG	0.484432	5:-77634134	MsaT029483.1:CDS
AAGTCTTAAATGCTCAAATT+GGG	0.487572	5:+77621040	None:intergenic
TGCACAAAGCATGGCATCCA+TGG	0.501829	5:-77627296	MsaT029483.1:CDS
TTCAAGAACAAGGCGTTCCA+TGG	0.504073	5:+77627279	None:intergenic
AGATTCAACAGCGGTAGAGT+AGG	0.549429	5:+77621688	None:intergenic
GATACGTTCGACGGTTGTGC+TGG	0.558179	5:-77634482	MsaT029483.1:CDS
ATCTGACACATCTCATTATG+CGG	0.559158	5:+77634167	None:intergenic
GGATGCCATGCTTTGTGCAG+TGG	0.561228	5:+77627300	None:intergenic
ACTCAGCAATCCTGATCTAA+GGG	0.564912	5:-77627257	MsaT029483.1:CDS
CTTGCTAGTCTTGGAGTCAT+CGG	0.568027	5:-77621020	MsaT029483.1:CDS
TCTGACACATCTCATTATGC+GGG	0.579718	5:+77634168	None:intergenic
TAGCACCACTGCACAAAGCA+TGG	0.592070	5:-77627305	MsaT029483.1:CDS
AGTCATCGGTGCGTTAGTGA+AGG	0.630469	5:-77621006	MsaT029483.1:intron
TACCGCCACTGTCATCCTCA+AGG	0.630654	5:-77634096	MsaT029483.1:CDS
CGGTTGTGCTGGAGTTGTTG+CGG	0.636159	5:-77634471	MsaT029483.1:CDS
GAAGAACGACGTCAACCTTG+AGG	0.650785	5:+77634081	None:intergenic
AATTCCATAATAAAGGTGCA+AGG	0.655845	5:+77625736	None:intergenic
TTGAGGATGACAGTGGCGGT+AGG	0.663707	5:+77634098	None:intergenic
CCGATGCTTGACCGCCAGAG+AGG	0.670253	5:+77634134	None:intergenic
GATTGCTGAGTTCAAGAACA+AGG	0.671470	5:+77627269	None:intergenic
AACCTTGAGGATGACAGTGG+CGG	0.692981	5:+77634094	None:intergenic
GTCAACCTTGAGGATGACAG+TGG	0.746342	5:+77634091	None:intergenic
GCTTGAGTAAGATTCAACAG+CGG	0.799751	5:+77621679	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	77620859	77634522	77620859	ID=MsaG029483
Chr5	mRNA	77620859	77634522	77620859	ID=MsaT029483.1;Parent=MsaG029483
Chr5	exon	77620859	77620873	77620859	ID=MsaT029483.1.exon8;Parent=MsaT029483.1
Chr5	CDS	77620859	77620873	77620859	ID=cds.MsaT029483.1;Parent=MsaT029483.1
Chr5	exon	77621007	77621113	77621007	ID=MsaT029483.1.exon7;Parent=MsaT029483.1
Chr5	CDS	77621007	77621113	77621007	ID=cds.MsaT029483.1;Parent=MsaT029483.1
Chr5	exon	77621406	77621448	77621406	ID=MsaT029483.1.exon6;Parent=MsaT029483.1
Chr5	CDS	77621406	77621448	77621406	ID=cds.MsaT029483.1;Parent=MsaT029483.1
Chr5	exon	77621639	77621728	77621639	ID=MsaT029483.1.exon5;Parent=MsaT029483.1
Chr5	CDS	77621639	77621728	77621639	ID=cds.MsaT029483.1;Parent=MsaT029483.1
Chr5	exon	77625707	77625778	77625707	ID=MsaT029483.1.exon4;Parent=MsaT029483.1
Chr5	CDS	77625707	77625778	77625707	ID=cds.MsaT029483.1;Parent=MsaT029483.1
Chr5	exon	77627231	77627343	77627231	ID=MsaT029483.1.exon3;Parent=MsaT029483.1
Chr5	CDS	77627231	77627343	77627231	ID=cds.MsaT029483.1;Parent=MsaT029483.1
Chr5	exon	77634078	77634204	77634078	ID=MsaT029483.1.exon2;Parent=MsaT029483.1
Chr5	CDS	77634078	77634204	77634078	ID=cds.MsaT029483.1;Parent=MsaT029483.1
Chr5	exon	77634460	77634522	77634460	ID=MsaT029483.1.exon1;Parent=MsaT029483.1
Chr5	CDS	77634460	77634522	77634460	ID=cds.MsaT029483.1;Parent=MsaT029483.1

Gene Sequence

>MsaT029483.1

ATGTTTCGTGTTTTCTGCGATACGTTCGACGGTTGTGCTGGAGTTGTTGCGGCTGGATTGCTGTTTTCAGTTGTTTACCCGCATAATGAGATGTGTCAGATTAGACGTTTTCCTCTCTGGCGGTCAAGCATCGGCTTGGATTCTCAACCTACCGCCACTGTCATCCTCAAGGTTGACGTCGTTCTTCAAGGTGCTTCTTCCCAATCTAGCACCACTGCACAAAGCATGGCATCCATGGAACGCCTTGTTCTTGAACTCAGCAATCCTGATCTAAGGGAAAATGCTCTTCGTGTTCTCTCCAAGAGGAACAGGTTATTTCCAGACCTTGCACCTTTATTATGGAATTCTTATGGTACTATTGCAATATTTTTACAGGAAATAACTTCAATATATCCTACTCTACCGCTGTTGAATCTTACTCAAGCACAATCAACTCGTGTGTGCAATGTTCTGGCACTACTTCAGTGTGTGGCATCTCATCCTGATACAAAAATGGAATTTCTCAATGCTAACATGCCTTTATATTTTTATCCATTCCTTCAAACGACAAGCGAGTTAGCCCAATTTGAGCATTTAAGACTTGCTAGTCTTGGAGTCATCGGTGCGTTAGTGAAGAGAAAAATCTTGTAA

Protein sequence

>MsaT029483.1

MFRVFCDTFDGCAGVVAAGLLFSVVYPHNEMCQIRRFPLWRSSIGLDSQPTATVILKVDVVLQGASSQSSTTAQSMASMERLVLELSNPDLRENALRVLSKRNRLFPDLAPLLWNSYGTIAIFLQEITSIYPTLPLLNLTQAQSTRVCNVLALLQCVASHPDTKMEFLNANMPLYFYPFLQTTSELAQFEHLRLASLGVIGALVKRKIL*