AlfalfaGEDB | MsaG029483

M. sativa ssp. caerulea / MsaG029483

KEGG: K12606 K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029483	XP_024627301.1	87.075	147	17	1	64	208	12	158	7.93e-76	239

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029483	sp\|Q6P819\|CNOT9_XENTR	64.463	121	43	0	85	205	28	148	4.99e-47	159

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029483	tr\|A0A396GV60\|A0A396GV60_MEDTR	87.075	147	17	1	64	208	12	158	6.68e-75	237

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TFs/TRs:

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Gene ID	Type	Classification
MsaG029483	TR	Rcd1-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000192	MsaG029483	0.821187	8.104481e-53	1.839382e-50
MsaG000458	MsaG029483	0.843162	3.095443e-58	1.336041e-55
MsaG000476	MsaG029483	0.806804	1.168254e-49	1.847719e-47
MsaG000578	MsaG029483	0.861856	1.510539e-63	1.260646e-60
MsaG000687	MsaG029483	0.824334	1.511633e-53	3.734200e-51
MsaG001001	MsaG029483	0.898645	9.899906e-77	4.678897e-73
MsaG001086	MsaG029483	0.812803	6.069135e-51	1.110317e-48
MsaG002273	MsaG029483	0.808081	6.278415e-50	1.023730e-47
MsaG002458	MsaG029483	0.833184	1.118195e-55	3.549220e-53
MsaG002866	MsaG029483	0.802297	1.007261e-48	1.434649e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029483	MtrunA17_Chr7g0224601	87.075	147	17	1	64	208	12	158	1.29e-78	237
MsaG029483	MtrunA17_Chr8g0392781	72.535	142	39	0	64	205	22	163	9.59e-64	201
MsaG029483	MtrunA17_Chr1g0177151	68.310	142	45	0	66	207	20	161	5.08e-62	194
MsaG029483	MtrunA17_Chr3g0099561	74.603	126	32	0	80	205	26	151	5.37e-58	185
MsaG029483	MtrunA17_Chr6g0477171	71.429	105	30	0	101	205	45	149	1.23e-42	144
MsaG029483	MtrunA17_Chr3g0083821	60.909	110	39	1	96	205	14	119	5.85e-39	130
MsaG029483	MtrunA17_Chr5g0444621	75.581	86	21	0	120	205	60	145	1.54e-37	131
MsaG029483	MtrunA17_Chr5g0444631	84.615	52	8	0	154	205	4	55	4.59e-26	95.5
MsaG029483	MtrunA17_Chr6g0477181	81.579	38	7	0	64	101	22	59	1.12e-13	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029483	AT3G20800.1	65.734	143	49	0	63	205	22	164	1.32e-56	182
MsaG029483	AT5G12980.1	62.879	132	49	0	74	205	29	160	4.83e-51	167
MsaG029483	AT2G32550.2	40.517	116	64	1	95	205	67	182	2.15e-14	70.9
MsaG029483	AT2G32550.3	41.905	105	56	1	106	205	39	143	7.27e-14	68.9

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Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTGAGGATGACAGTGG+CGG	0.692981	5:+77634094	None:intergenic
AACTCAGCAATCCTGATCTA+AGG	0.276656	5:-77627258	MsaT029483.1:CDS
AACTCGTGTGTGCAATGTTC+TGG	0.463403	5:-77621650	MsaT029483.1:CDS
AAGGTTGACGTCGTTCTTCA+AGG	0.407633	5:-77634077	MsaT029483.1:intron
AAGTCTTAAATGCTCAAATT+GGG	0.487572	5:+77621040	None:intergenic
AATTCCATAATAAAGGTGCA+AGG	0.655845	5:+77625736	None:intergenic
ACTCAGCAATCCTGATCTAA+GGG	0.564912	5:-77627257	MsaT029483.1:CDS
AGATTCAACAGCGGTAGAGT+AGG	0.549429	5:+77621688	None:intergenic
AGTCATCGGTGCGTTAGTGA+AGG	0.630469	5:-77621006	MsaT029483.1:intron
AGTTGTTGCGGCTGGATTGC+TGG	0.331413	5:-77634459	MsaT029483.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	77620859	77634522	77620859	ID=MsaG029483
Chr5	mRNA	77620859	77634522	77620859	ID=MsaT029483.1;Parent=MsaG029483
Chr5	exon	77620859	77620873	77620859	ID=MsaT029483.1.exon8;Parent=MsaT029483.1
Chr5	CDS	77620859	77620873	77620859	ID=cds.MsaT029483.1;Parent=MsaT029483.1
Chr5	exon	77621007	77621113	77621007	ID=MsaT029483.1.exon7;Parent=MsaT029483.1
Chr5	CDS	77621007	77621113	77621007	ID=cds.MsaT029483.1;Parent=MsaT029483.1
Chr5	exon	77621406	77621448	77621406	ID=MsaT029483.1.exon6;Parent=MsaT029483.1
Chr5	CDS	77621406	77621448	77621406	ID=cds.MsaT029483.1;Parent=MsaT029483.1
Chr5	exon	77621639	77621728	77621639	ID=MsaT029483.1.exon5;Parent=MsaT029483.1
Chr5	CDS	77621639	77621728	77621639	ID=cds.MsaT029483.1;Parent=MsaT029483.1
Chr5	exon	77625707	77625778	77625707	ID=MsaT029483.1.exon4;Parent=MsaT029483.1
Chr5	CDS	77625707	77625778	77625707	ID=cds.MsaT029483.1;Parent=MsaT029483.1
Chr5	exon	77627231	77627343	77627231	ID=MsaT029483.1.exon3;Parent=MsaT029483.1
Chr5	CDS	77627231	77627343	77627231	ID=cds.MsaT029483.1;Parent=MsaT029483.1
Chr5	exon	77634078	77634204	77634078	ID=MsaT029483.1.exon2;Parent=MsaT029483.1
Chr5	CDS	77634078	77634204	77634078	ID=cds.MsaT029483.1;Parent=MsaT029483.1
Chr5	exon	77634460	77634522	77634460	ID=MsaT029483.1.exon1;Parent=MsaT029483.1
Chr5	CDS	77634460	77634522	77634460	ID=cds.MsaT029483.1;Parent=MsaT029483.1

Gene Sequence

>MsaT029483.1

ATGTTTCGTGTTTTCTGCGATACGTTCGACGGTTGTGCTGGAGTTGTTGCGGCTGGATTGCTGTTTTCAGTTGTTTACCCGCATAATGAGATGTGTCAGATTAGACGTTTTCCTCTCTGGCGGTCAAGCATCGGCTTGGATTCTCAACCTACCGCCACTGTCATCCTCAAGGTTGACGTCGTTCTTCAAGGTGCTTCTTCCCAATCTAGCACCACTGCACAAAGCATGGCATCCATGGAACGCCTTGTTCTTGAACTCAGCAATCCTGATCTAAGGGAAAATGCTCTTCGTGTTCTCTCCAAGAGGAACAGGTTATTTCCAGACCTTGCACCTTTATTATGGAATTCTTATGGTACTATTGCAATATTTTTACAGGAAATAACTTCAATATATCCTACTCTACCGCTGTTGAATCTTACTCAAGCACAATCAACTCGTGTGTGCAATGTTCTGGCACTACTTCAGTGTGTGGCATCTCATCCTGATACAAAAATGGAATTTCTCAATGCTAACATGCCTTTATATTTTTATCCATTCCTTCAAACGACAAGCGAGTTAGCCCAATTTGAGCATTTAAGACTTGCTAGTCTTGGAGTCATCGGTGCGTTAGTGAAGAGAAAAATCTTGTAA

Protein sequence

>MsaT029483.1

MFRVFCDTFDGCAGVVAAGLLFSVVYPHNEMCQIRRFPLWRSSIGLDSQPTATVILKVDVVLQGASSQSSTTAQSMASMERLVLELSNPDLRENALRVLSKRNRLFPDLAPLLWNSYGTIAIFLQEITSIYPTLPLLNLTQAQSTRVCNVLALLQCVASHPDTKMEFLNANMPLYFYPFLQTTSELAQFEHLRLASLGVIGALVKRKIL*