AlfalfaGEDB | MsaG029569

M. sativa ssp. caerulea / MsaG029569

KEGG: -
GO: GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029569	XP_024640656.1	74.372	398	65	5	1	383	1	376	0.0	557

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029569	sp\|Q84WU6\|ARFQ_ARATH	32.982	379	181	11	9	331	16	377	8.02e-57	199

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029569	tr\|A0A396HRU8\|A0A396HRU8_MEDTR	74.372	398	65	5	1	383	1	376	0.0	557

TFs/TRs:

Gene ID	Type	Classification
MsaG029569	TF	B3-ARF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000237	MsaG029569	0.847337	2.327330e-59	1.152598e-56
MsaG001238	MsaG029569	0.853930	3.322223e-61	2.065924e-58
MsaG001322	MsaG029569	0.817948	4.409492e-52	9.191342e-50
MsaG001529	MsaG029569	0.821404	7.224849e-53	1.649128e-50
MsaG002353	MsaG029569	0.816432	9.629362e-52	1.930280e-49
MsaG003188	MsaG029569	0.819402	2.069614e-52	4.480563e-50
MsaG003190	MsaG029569	0.808770	4.482611e-50	7.431495e-48
MsaG004146	MsaG029569	0.858364	1.693549e-62	1.237860e-59
MsaG004903	MsaG029569	0.810848	1.609487e-50	2.805996e-48
MsaG004986	MsaG029569	0.807755	7.359520e-50	1.190631e-47
MsaG005476	MsaG029569	0.855164	1.466179e-61	9.527916e-59
MsaG005702	MsaG029569	0.876568	2.622203e-68	4.044072e-65
MsaG006048	MsaG029569	0.846599	3.696423e-59	1.785872e-56
MsaG006177	MsaG029569	0.815622	1.457536e-51	2.862281e-49
MsaG006837	MsaG029569	0.803269	6.358408e-49	9.260808e-47
MsaG006886	MsaG029569	0.805411	2.286931e-49	3.500339e-47
MsaG007072	MsaG029569	0.826153	5.642345e-54	1.465421e-51
MsaG007364	MsaG029569	0.820879	9.533875e-53	2.146156e-50
MsaG009061	MsaG029569	0.874174	1.712770e-67	2.375477e-64
MsaG009174	MsaG029569	0.837767	7.855475e-57	2.860555e-54
MsaG009366	MsaG029569	0.850334	3.458993e-60	1.896127e-57
MsaG010060	MsaG029569	0.818827	2.793911e-52	5.957843e-50
MsaG010365	MsaG029569	0.859082	1.035574e-62	7.776220e-60
MsaG010678	MsaG029569	0.838075	6.553666e-57	2.409211e-54
MsaG011109	MsaG029569	0.840258	1.791070e-57	7.048900e-55
MsaG011226	MsaG029569	0.843827	2.059684e-58	9.081462e-56
MsaG011952	MsaG029569	0.803455	5.821262e-49	8.514849e-47
MsaG012079	MsaG029569	0.806575	1.304818e-49	2.052743e-47
MsaG012555	MsaG029569	0.810353	2.056777e-50	3.542853e-48
MsaG012736	MsaG029569	0.891914	5.697990e-74	1.857591e-70
MsaG014153	MsaG029569	0.803379	6.035245e-49	8.812540e-47
MsaG015807	MsaG029569	0.860199	4.795250e-63	3.757116e-60
MsaG016835	MsaG029569	0.819420	2.050435e-52	4.441177e-50
MsaG017133	MsaG029569	0.850130	3.944779e-60	2.147222e-57
MsaG017259	MsaG029569	0.800790	2.044631e-48	2.814283e-46
MsaG018134	MsaG029569	0.801793	1.277029e-48	1.798075e-46
MsaG018658	MsaG029569	0.827918	2.144090e-54	5.849920e-52
MsaG018975	MsaG029569	0.806589	1.296355e-49	2.040057e-47
MsaG019234	MsaG029569	0.887727	2.408569e-72	6.317290e-69
MsaG020968	MsaG029569	0.807800	7.199537e-50	1.166029e-47
MsaG021249	MsaG029569	0.811533	1.145194e-50	2.030325e-48
MsaG021530	MsaG029569	0.806181	1.578416e-49	2.460063e-47
MsaG022281	MsaG029569	0.803308	6.243322e-49	9.101228e-47
MsaG023025	MsaG029569	0.862971	6.890226e-64	6.006555e-61
MsaG023049	MsaG029569	0.840595	1.464172e-57	5.823572e-55
MsaG023885	MsaG029569	0.821011	8.892436e-53	2.008898e-50
MsaG023890	MsaG029569	0.813016	5.454003e-51	1.003101e-48
MsaG025492	MsaG029569	0.818239	3.791362e-52	7.962426e-50
MsaG027026	MsaG029569	0.806055	1.677758e-49	2.607056e-47
MsaG027524	MsaG029569	0.808948	4.109466e-50	6.842028e-48
MsaG027521	MsaG029569	0.817015	7.134927e-52	1.451966e-49
MsaG027720	MsaG029569	0.875190	7.758341e-68	1.125180e-64
MsaG028767	MsaG029569	0.837437	9.536863e-57	3.438073e-54
MsaG028937	MsaG029569	0.838928	3.957131e-57	1.493912e-54
MsaG029001	MsaG029569	0.837184	1.106419e-56	3.957768e-54
MsaG029046	MsaG029569	0.818771	2.876364e-52	6.124710e-50
MsaG029200	MsaG029569	0.800485	2.358143e-48	3.223438e-46
MsaG029232	MsaG029569	0.803426	5.901305e-49	8.626260e-47
MsaG029361	MsaG029569	0.802833	7.816986e-49	1.127087e-46
MsaG029424	MsaG029569	0.816220	1.073211e-51	2.139851e-49
MsaG029569	MsaG029626	0.803228	6.484006e-49	9.434821e-47
MsaG029569	MsaG033014	0.811932	9.384830e-51	1.680300e-48
MsaG029569	MsaG033632	0.807659	7.714639e-50	1.245177e-47
MsaG029569	MsaG033646	0.882189	2.731887e-70	5.462963e-67
MsaG029569	MsaG033698	0.821506	6.844291e-53	1.566530e-50
MsaG029569	MsaG033921	0.884911	2.752890e-71	6.277871e-68
MsaG029569	MsaG034285	0.810161	2.261890e-50	3.877764e-48
MsaG029569	MsaG034328	0.846241	4.623004e-59	2.207228e-56
MsaG029569	MsaG034444	0.813263	4.817597e-51	8.915258e-49
MsaG029569	MsaG034601	0.800874	1.966002e-48	2.711083e-46
MsaG029569	MsaG035051	0.826133	5.705117e-54	1.480883e-51
MsaG029569	MsaG035121	0.826806	3.948597e-54	1.044280e-51
MsaG029569	MsaG035198	0.852435	8.867004e-61	5.230153e-58
MsaG029569	MsaG039631	0.809282	3.488203e-50	5.854170e-48
MsaG029569	MsaG039872	0.810868	1.594175e-50	2.780560e-48
MsaG029569	MsaG044622	0.830222	5.964763e-55	1.737220e-52
MsaG029569	MsaG044752	0.835601	2.784043e-56	9.494986e-54
MsaG029569	MsaG045251	0.808997	4.012087e-50	6.687714e-48
MsaG029569	MsaG045375	0.816217	1.075032e-51	2.143296e-49
MsaG029569	MsaG046119	0.823960	1.849483e-53	4.522194e-51
MsaG029569	MsaG046136	0.821219	7.968864e-53	1.810110e-50
MsaG029569	MsaG046456	0.850756	2.635577e-60	1.466108e-57
MsaG029569	MsaG046473	0.803699	5.183585e-49	7.625225e-47
MsaG029569	MsaG046863	0.883239	1.134476e-70	2.386275e-67
MsaG029569	MsaG014581	0.823007	3.081634e-53	7.343126e-51
MsaG029569	MsaG012599	0.842914	3.600441e-58	1.541758e-55
MsaG029569	MsaG018096	0.822454	4.138863e-53	9.715728e-51
MsaG029569	MsaG030963	0.800277	2.598035e-48	3.534668e-46
MsaG029569	MsaG031757	0.855466	1.198204e-61	7.872768e-59
MsaG029569	MsaG033428	0.874246	1.619732e-67	2.253558e-64
MsaG029569	MsaG034358	0.823372	2.534758e-53	6.100073e-51
MsaG029569	MsaG031379	0.841900	6.667165e-58	2.763929e-55
MsaG029569	MsaG033182	0.809611	2.965976e-50	5.017742e-48
MsaG029569	MsaG032668	0.803399	5.979087e-49	8.734436e-47
MsaG029569	MsaG035313	0.801107	1.762395e-48	2.443118e-46
MsaG029569	MsaG037513	0.811637	1.087696e-50	1.933267e-48
MsaG029569	MsaG035982	0.811999	9.079662e-51	1.628246e-48
MsaG029569	MsaG037076	0.823007	3.081050e-53	7.341855e-51
MsaG029569	MsaG037376	0.815625	1.455273e-51	2.858076e-49
MsaG029569	MsaG037822	0.902165	2.975067e-78	1.728998e-74
MsaG029569	MsaG038285	0.830167	6.150432e-55	1.788501e-52
MsaG029569	MsaG036473	0.874997	9.028530e-68	1.298306e-64
MsaG029569	MsaG046774	0.822257	4.596368e-53	1.073279e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029569	MtrunA17_Chr5g0425261	74.372	398	65	5	1	383	1	376	0.0	557
MsaG029569	MtrunA17_Chr5g0424801	73.858	394	74	4	1	383	1	376	0.0	555
MsaG029569	MtrunA17_Chr5g0424741	46.139	531	157	12	1	410	1	523	1.74e-125	372
MsaG029569	MtrunA17_Chr5g0424931	47.193	481	156	12	1	397	8	474	4.36e-123	367
MsaG029569	MtrunA17_Chr1g0178011	49.885	433	164	14	1	410	1	403	7.51e-121	358
MsaG029569	MtrunA17_Chr2g0289221	52.632	323	124	12	1	304	9	321	1.52e-94	288
MsaG029569	MtrunA17_Chr5g0417281	40.336	476	204	14	5	410	4	469	1.65e-91	285
MsaG029569	MtrunA17_Chr5g0417211	51.543	324	127	10	1	304	1	314	1.51e-88	274
MsaG029569	MtrunA17_Chr5g0436761	44.414	367	169	12	5	349	5	358	4.64e-84	264
MsaG029569	MtrunA17_Chr2g0277461	43.511	393	179	16	1	368	1	375	3.77e-81	256
MsaG029569	MtrunA17_Chr2g0277531	44.444	315	149	12	6	304	14	318	3.80e-73	231
MsaG029569	MtrunA17_Chr5g0425661	55.238	210	78	7	8	205	33	238	1.07e-63	204
MsaG029569	MtrunA17_Chr3g0115271	35.181	415	185	13	8	357	15	410	4.11e-61	207
MsaG029569	MtrunA17_Chr2g0326761	34.316	373	173	11	8	318	7	369	1.83e-53	189
MsaG029569	MtrunA17_Chr1g0181211	34.211	380	170	12	9	318	24	393	5.28e-50	179
MsaG029569	MtrunA17_Chr5g0424791	64.789	142	46	2	61	200	12	151	8.01e-49	162
MsaG029569	MtrunA17_Chr1g0199681	33.249	397	186	13	9	341	91	472	3.83e-48	174
MsaG029569	MtrunA17_Chr4g0028971	34.414	401	183	13	9	341	9	397	5.52e-48	174
MsaG029569	MtrunA17_Chr5g0425651	61.207	116	37	2	216	331	1	108	2.55e-40	139
MsaG029569	MtrunA17_Chr7g0264161	32.468	308	175	9	22	304	2	301	3.28e-38	139
MsaG029569	MtrunA17_Chr2g0276781	31.129	363	186	12	12	336	23	359	4.25e-38	145
MsaG029569	MtrunA17_Chr8g0385791	31.609	348	197	12	12	332	59	392	1.84e-37	144
MsaG029569	MtrunA17_Chr4g0009751	30.362	359	211	10	10	343	17	361	1.67e-36	140
MsaG029569	MtrunA17_Chr2g0285461	30.618	356	198	13	9	332	20	358	3.22e-36	141
MsaG029569	MtrunA17_Chr7g0239061	30.145	345	204	10	12	332	14	345	8.89e-36	139
MsaG029569	MtrunA17_Chr7g0264171	28.606	416	194	13	8	341	27	421	1.72e-35	137
MsaG029569	MtrunA17_Chr5g0433301	29.508	427	237	17	9	398	21	420	4.93e-35	137
MsaG029569	MtrunA17_Chr3g0109391	28.472	432	245	17	9	403	23	427	3.04e-34	135
MsaG029569	MtrunA17_Chr1g0156321	30.556	360	208	13	8	339	39	384	6.03e-34	134
MsaG029569	MtrunA17_Chr2g0282961	28.726	369	210	13	3	337	44	393	6.32e-34	133
MsaG029569	MtrunA17_Chr8g0376771	30.337	356	198	13	9	332	20	357	1.28e-33	133
MsaG029569	MtrunA17_Chr2g0301251	30.791	354	200	14	8	332	19	356	8.37e-33	131
MsaG029569	MtrunA17_Chr4g0070181	29.972	357	199	13	8	332	19	356	2.52e-32	129
MsaG029569	MtrunA17_Chr8g0346711	29.971	347	201	12	12	332	29	359	3.13e-32	129
MsaG029569	MtrunA17_Chr4g0046371	27.989	368	210	13	8	338	34	383	2.78e-30	123
MsaG029569	MtrunA17_Chr8g0389081	28.977	352	209	12	9	332	29	367	1.10e-27	115
MsaG029569	MtrunA17_Chr2g0326281	28.117	377	201	15	12	335	56	415	1.73e-25	108
MsaG029569	MtrunA17_Chr4g0029671	28.212	358	206	14	12	332	54	397	4.18e-23	102
MsaG029569	MtrunA17_Chr5g0419861	35.398	113	53	4	53	152	15	120	3.07e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029569	AT1G77850.1	32.982	379	181	11	9	331	16	377	8.15e-58	199
MsaG029569	AT1G77850.2	32.982	379	181	11	9	331	16	377	9.08e-58	199
MsaG029569	AT2G28350.2	32.282	412	200	14	3	346	1	401	4.96e-48	174
MsaG029569	AT2G28350.1	32.282	412	200	14	3	346	1	401	7.13e-48	174
MsaG029569	AT4G30080.1	33.666	401	193	13	8	346	15	404	1.70e-47	172
MsaG029569	AT3G61830.1	32.102	352	197	10	12	337	25	360	5.88e-42	156
MsaG029569	AT2G46530.1	31.792	346	196	9	12	332	21	351	1.94e-41	155
MsaG029569	AT2G46530.3	31.792	346	196	9	12	332	42	372	2.06e-41	155
MsaG029569	AT1G59750.4	31.054	351	194	12	12	332	22	354	2.02e-37	144
MsaG029569	AT1G59750.1	31.054	351	194	12	12	332	22	354	2.04e-37	144
MsaG029569	AT1G59750.3	31.054	351	194	12	12	332	22	354	2.04e-37	144
MsaG029569	AT1G59750.2	31.054	351	194	12	12	332	22	354	2.12e-37	144
MsaG029569	AT1G34390.1	31.412	347	188	11	12	331	27	350	1.42e-36	141
MsaG029569	AT5G37020.2	31.268	355	197	16	9	332	19	357	1.94e-36	142
MsaG029569	AT5G62000.4	30.352	369	196	16	12	342	61	406	1.97e-36	142
MsaG029569	AT5G62000.2	30.352	369	196	16	12	342	61	406	2.18e-36	142
MsaG029569	AT5G62000.5	30.352	369	196	16	12	342	61	406	2.18e-36	142
MsaG029569	AT5G62000.3	30.352	369	196	16	12	342	61	406	2.18e-36	142
MsaG029569	AT5G62000.1	30.352	369	196	16	12	342	61	406	2.18e-36	142
MsaG029569	AT5G37020.1	31.268	355	197	16	9	332	19	357	2.33e-36	141
MsaG029569	AT1G30330.3	30.986	355	198	13	9	332	22	360	1.04e-35	140
MsaG029569	AT1G30330.2	30.986	355	198	13	9	332	22	360	1.04e-35	140
MsaG029569	AT1G30330.1	30.986	355	198	13	9	332	20	358	1.10e-35	140
MsaG029569	AT1G34410.1	31.519	349	187	13	12	331	27	352	1.01e-34	135
MsaG029569	AT1G35520.1	31.232	349	188	14	12	331	27	352	4.33e-34	134
MsaG029569	AT1G35240.1	31.519	349	187	13	12	331	27	352	5.37e-34	134
MsaG029569	AT4G23980.1	28.205	351	203	10	12	332	12	343	1.21e-33	133
MsaG029569	AT4G23980.2	28.205	351	203	10	12	332	12	343	1.27e-33	133
MsaG029569	AT1G34310.1	32.012	328	178	12	9	307	24	335	1.32e-33	132
MsaG029569	AT1G35540.1	30.571	350	189	14	12	331	27	352	1.16e-32	130
MsaG029569	AT2G33860.1	30.278	360	198	15	12	337	54	394	3.87e-31	125
MsaG029569	AT1G19850.1	30.194	361	211	12	7	339	49	396	1.16e-30	125
MsaG029569	AT1G19850.2	30.194	361	211	12	7	339	38	385	1.30e-30	125
MsaG029569	AT5G20730.1	29.213	356	202	12	9	332	21	358	1.42e-30	125
MsaG029569	AT5G20730.3	29.213	356	202	12	9	332	21	358	1.49e-30	124
MsaG029569	AT1G19220.1	28.895	353	206	12	9	332	20	356	2.06e-30	124
MsaG029569	AT5G20730.2	29.494	356	200	13	9	332	21	357	4.13e-30	123
MsaG029569	AT3G61830.2	30.990	313	178	9	47	337	13	309	5.61e-29	119
MsaG029569	AT5G60450.2	27.500	360	212	14	8	332	37	382	8.64e-27	113
MsaG029569	AT5G60450.1	27.528	356	209	14	12	332	65	406	1.80e-26	112
MsaG029569	AT1G34170.1	28.329	353	195	13	12	331	25	352	5.30e-26	110
MsaG029569	AT1G43950.1	32.843	204	117	6	12	203	27	222	4.36e-24	99.8
MsaG029569	AT2G46530.2	31.557	244	130	8	111	332	36	264	1.70e-22	99.8
MsaG029569	AT5G37020.3	30.882	272	149	14	85	332	6	262	1.50e-20	94.4
MsaG029569	AT1G34170.3	31.429	210	119	7	12	204	25	226	1.35e-19	91.3
MsaG029569	AT1G34170.2	31.429	210	119	7	12	204	25	226	1.69e-19	90.9
MsaG029569	AT2G33860.2	29.555	247	138	10	114	337	4	237	8.33e-19	88.6

Find 114 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGCGCATTTCTGCCATATTT+TGG	0.133941	5:+78972336	None:intergenic
CTACTTCCCACAAGGTAATT+TGG	0.157056	5:-78972272	MsaT029569.1:CDS
TCTCTTTATCATAGGTTAAC+TGG	0.215844	5:-78970822	MsaT029569.1:intron
ATTCTTCTAATGTACCTAAT+TGG	0.268826	5:-78971463	MsaT029569.1:CDS
TGTTTCCATTGTCGGCTTCT+TGG	0.269207	5:+78972068	None:intergenic
TTGGCTCATTGGACCTATTA+TGG	0.290349	5:+78970358	None:intergenic
GGTTTGGATTCTGTGGGATA+TGG	0.299940	5:+78970770	None:intergenic
TTTGGATTCTGTGGGATATT+AGG	0.307838	5:+78970793	None:intergenic
TCACTTGGTGCTTGGCTCAT+TGG	0.308376	5:+78970347	None:intergenic
TGCCAAGTATTGACTAGGTT+TGG	0.312049	5:+78970754	None:intergenic
GATCTTGCCCAAGCTTGATT+TGG	0.314401	5:-78971966	MsaT029569.1:CDS
TCCATTGTCGGCTTCTTGGC+CGG	0.335590	5:+78972072	None:intergenic
ATGAAGATTGGTTGGAAATC+TGG	0.337904	5:-78971581	MsaT029569.1:CDS
CTTCTGTGGACCCCAAAATA+TGG	0.347094	5:-78972348	MsaT029569.1:CDS
CGTTGCCTCATAACCATAAT+AGG	0.348120	5:-78970371	MsaT029569.1:CDS
CTTGGTCAGTTACGGGAGTT+AGG	0.352495	5:+78972116	None:intergenic
CCATTGTCGGCTTCTTGGCC+GGG	0.370880	5:+78972073	None:intergenic
TAAACTTTAGAGTGAACCTT+TGG	0.372785	5:+78972295	None:intergenic
ACAAAAGAGATTGTCCCTTT+AGG	0.373244	5:+78971494	None:intergenic
ATGAATCTGATACAGATAAA+TGG	0.381071	5:+78970508	None:intergenic
CCACAGGAGGAGGAGGTTCT+TGG	0.381303	5:+78972098	None:intergenic
AACAAGATTGTTTCCATTGT+CGG	0.382825	5:+78972060	None:intergenic
AGATTTCCAACCAATCTTCA+TGG	0.383662	5:+78971583	None:intergenic
GATAAGCATGACGGATTCAC+TGG	0.385768	5:-78970471	MsaT029569.1:CDS
AGGAGGTTCTTGGTCAGTTA+CGG	0.395498	5:+78972108	None:intergenic
CCTCCTCCTCCTGTGGTTCC+CGG	0.396767	5:-78972091	MsaT029569.1:CDS
ACCTTTGGAATCTCGACGTC+GGG	0.402652	5:+78972310	None:intergenic
CTCTTTATCATAGGTTAACT+GGG	0.403608	5:-78970821	MsaT029569.1:intron
GGAGGTTCTTGGTCAGTTAC+GGG	0.408872	5:+78972109	None:intergenic
ATGGTGATTGTGGCAGCATT+AGG	0.410282	5:+78972232	None:intergenic
GGATTCTGTGGGATATGGTT+TGG	0.411156	5:+78970775	None:intergenic
ACCTCAAGCATGCGCCAATT+AGG	0.414075	5:+78971449	None:intergenic
TTCCTCCTTCATTCCTATGC+AGG	0.431062	5:-78970550	MsaT029569.1:CDS
GACTCGTCCAAATCAAGCTT+GGG	0.438970	5:+78971959	None:intergenic
TCATTCCTATGCAGGGAGTC+AGG	0.445797	5:-78970542	MsaT029569.1:CDS
TTGGACCTATTATGGTTATG+AGG	0.446632	5:+78970366	None:intergenic
TGGAATCTCGACGTCGGGGC+CGG	0.458091	5:+78972315	None:intergenic
TACGGGAGTTAGGAGCAGTT+TGG	0.459974	5:+78972126	None:intergenic
TGGCCGGGAACCACAGGAGG+AGG	0.465408	5:+78972088	None:intergenic
CATGTTCCAAATTACCTTGT+GGG	0.465475	5:+78972266	None:intergenic
CAATCTGCCAAGTATTGACT+AGG	0.474525	5:+78970749	None:intergenic
AATGAAAACAACAGAATCGT+TGG	0.475212	5:+78971817	None:intergenic
GTTGACGATGCCATGAAGAT+TGG	0.477758	5:-78971593	MsaT029569.1:CDS
TATAAGTGTACCTCCATTCT+CGG	0.482427	5:+78971906	None:intergenic
GGGATATGGTTTGGATTCTG+TGG	0.482821	5:+78970784	None:intergenic
GAAGATTCATCTTTCTTCAA+AGG	0.488166	5:+78971542	None:intergenic
TCTTCCTCAGCCACCTTCTG+TGG	0.490509	5:-78972362	MsaT029569.1:CDS
AGACTCGTCCAAATCAAGCT+TGG	0.490804	5:+78971958	None:intergenic
TGACATATTCTCAGCCTAAA+GGG	0.490948	5:-78971508	MsaT029569.1:CDS
CCGGGAACCACAGGAGGAGG+AGG	0.492789	5:+78972091	None:intergenic
GCTTCTTGGCCGGGAACCAC+AGG	0.493522	5:+78972082	None:intergenic
ATGACATATTCTCAGCCTAA+AGG	0.493756	5:-78971509	MsaT029569.1:CDS
ATCCAAACCTAGTCAATACT+TGG	0.494257	5:-78970756	MsaT029569.1:CDS
TTATCATAGGTTAACTGGGA+TGG	0.500782	5:-78970817	MsaT029569.1:intron
TTGACTAGGTTTGGATTCTG+TGG	0.502251	5:+78970763	None:intergenic
TGACTAGGTTTGGATTCTGT+GGG	0.503890	5:+78970764	None:intergenic
CGATATTTGTCGGAATTCAC+AGG	0.503905	5:-78971778	MsaT029569.1:CDS
TGCTTCATCCGTAGTGAAGT+TGG	0.506448	5:+78971751	None:intergenic
AAGATACCTCACTTGGTGCT+TGG	0.507669	5:+78970339	None:intergenic
AATTCCGACAAATATCGTTC+CGG	0.511703	5:+78971784	None:intergenic
GACTCCCTGCATAGGAATGA+AGG	0.513722	5:+78970545	None:intergenic
GGATATGGTTTGGATTCTGT+GGG	0.517038	5:+78970785	None:intergenic
ACTGGGAATAGTTCAATGGC+AGG	0.519560	5:-78970453	MsaT029569.1:CDS
TCCTCCTTCATTCCTATGCA+GGG	0.528220	5:-78970549	MsaT029569.1:CDS
GGCAGAGACGATGCATGGAA+TGG	0.529105	5:+78972189	None:intergenic
GAGACGATGCATGGAATGGA+TGG	0.532282	5:+78972193	None:intergenic
AAGGAGGAAGTTGACGGTGG+AGG	0.544243	5:+78970564	None:intergenic
AAACTCAGTAGCTTACATAC+TGG	0.544769	5:-78971875	MsaT029569.1:CDS
CAAAGGTTTAGCTCTATGTC+AGG	0.548025	5:+78970414	None:intergenic
CCAAGAACCTCCTCCTCCTG+TGG	0.552145	5:-78972098	MsaT029569.1:CDS
ACCTAATTGGCGCATGCTTG+AGG	0.556653	5:-78971450	MsaT029569.1:intron
ACGATGCCATGAAGATTGGT+TGG	0.558168	5:-78971589	MsaT029569.1:CDS
AACTTCACTACGGATGAAGC+AGG	0.561010	5:-78971749	MsaT029569.1:intron
TCTTGGCCGGGAACCACAGG+AGG	0.561393	5:+78972085	None:intergenic
GTGTATTATCCGACAGCTAG+TGG	0.562344	5:-78971647	MsaT029569.1:CDS
AAAATATGGCAGAAATGCGC+CGG	0.563934	5:-78972334	MsaT029569.1:CDS
GGGTCCACAGAAGGTGGCTG+AGG	0.567295	5:+78972358	None:intergenic
AGTTCAATGGCAGGGTTGAG+TGG	0.576646	5:-78970444	MsaT029569.1:CDS
TCTGCCGGAACGATATTTGT+CGG	0.582098	5:-78971788	MsaT029569.1:CDS
TCATGCCTGACTCCCTGCAT+AGG	0.582427	5:+78970537	None:intergenic
ATTCACTGGGAATAGTTCAA+TGG	0.583674	5:-78970457	MsaT029569.1:CDS
TGGACGGTAACGATCAAGAA+TGG	0.583957	5:+78972213	None:intergenic
GCATGTTCCAAATTACCTTG+TGG	0.586505	5:+78972265	None:intergenic
CCGACCTTAAAATCCGAGAA+TGG	0.590215	5:-78971919	MsaT029569.1:CDS
ATGAAGGAGGAAGTTGACGG+TGG	0.590817	5:+78970561	None:intergenic
TCAGTAGCTTACATACTGGC+TGG	0.593404	5:-78971871	MsaT029569.1:CDS
TCAACGGCAGAGACGATGCA+TGG	0.604313	5:+78972184	None:intergenic
GCCAATGAAGATACCTCACT+TGG	0.608165	5:+78970332	None:intergenic
ACGATCAAGAATGGTGATTG+TGG	0.610673	5:+78972222	None:intergenic
CCCGGCCAAGAAGCCGACAA+TGG	0.614065	5:-78972073	MsaT029569.1:CDS
TGTTGATCCTCACACCGAAG+AGG	0.618279	5:-78972155	MsaT029569.1:CDS
CGATGCATGGAATGGATGGA+CGG	0.620709	5:+78972197	None:intergenic
CTGGGAATAGTTCAATGGCA+GGG	0.622015	5:-78970452	MsaT029569.1:CDS
GGAATGAAGGAGGAAGTTGA+CGG	0.626658	5:+78970558	None:intergenic
CAGGAATACCAACTTCACTA+CGG	0.628890	5:-78971759	MsaT029569.1:CDS
CAGCACCTCTAGGACTGCAA+AGG	0.629336	5:+78970397	None:intergenic
ATAAGCATGACGGATTCACT+GGG	0.631573	5:-78970470	MsaT029569.1:CDS
TCTCGCCAACCACTAGCTGT+CGG	0.633969	5:+78971638	None:intergenic
ATTATCCGACAGCTAGTGGT+TGG	0.634972	5:-78971643	MsaT029569.1:CDS
AACCTTTGGAATCTCGACGT+CGG	0.636840	5:+78972309	None:intergenic
CTAAACCTTTGCAGTCCTAG+AGG	0.637629	5:-78970402	MsaT029569.1:CDS
GGCAACGAGTCAGCACCTCT+AGG	0.637822	5:+78970387	None:intergenic
TTTAGATGCAGCGGAACTGG+CGG	0.639406	5:-78971693	MsaT029569.1:CDS
TAAGCTACTGAGTTTCGCGT+AGG	0.640847	5:+78971883	None:intergenic
CCCCGACGTCGAGATTCCAA+AGG	0.652414	5:-78972311	MsaT029569.1:CDS
AATGAGCCAAGCACCAAGTG+AGG	0.655123	5:-78970345	None:intergenic
AGGATCAACAAAGAGATCAA+CGG	0.658354	5:+78972168	None:intergenic
ACCTTAAAATCCGAGAATGG+AGG	0.663409	5:-78971916	MsaT029569.1:CDS
AAAGTTTACTACTTCCCACA+AGG	0.669890	5:-78972280	MsaT029569.1:CDS
AGGTGGCTGAGGAAGAGACA+TGG	0.686110	5:+78972369	None:intergenic
TCCCTGCATAGGAATGAAGG+AGG	0.687917	5:+78970548	None:intergenic
CCTTTGGAATCTCGACGTCG+GGG	0.690099	5:+78972311	None:intergenic
TTGTGTGAGAGTCTTGACAC+AGG	0.695384	5:+78972036	None:intergenic
ATCAAGTCAGAGCATTCACG+AGG	0.745454	5:+78971986	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	78970347	78972389	78970347	ID=MsaG029569
Chr5	mRNA	78970347	78972389	78970347	ID=MsaT029569.1;Parent=MsaG029569
Chr5	exon	78970347	78970586	78970347	ID=MsaT029569.1.exon4;Parent=MsaT029569.1
Chr5	CDS	78970347	78970586	78970347	ID=cds.MsaT029569.1;Parent=MsaT029569.1
Chr5	exon	78970747	78970830	78970747	ID=MsaT029569.1.exon3;Parent=MsaT029569.1
Chr5	CDS	78970747	78970830	78970747	ID=cds.MsaT029569.1;Parent=MsaT029569.1
Chr5	exon	78971451	78971719	78971451	ID=MsaT029569.1.exon2;Parent=MsaT029569.1
Chr5	CDS	78971451	78971719	78971451	ID=cds.MsaT029569.1;Parent=MsaT029569.1
Chr5	exon	78971750	78972389	78971750	ID=MsaT029569.1.exon1;Parent=MsaT029569.1
Chr5	CDS	78971750	78972389	78971750	ID=cds.MsaT029569.1;Parent=MsaT029569.1

Gene Sequence

>MsaT029569.1

ATGTCTCTTCCTCAGCCACCTTCTGTGGACCCCAAAATATGGCAGAAATGCGCCGGCCCCGACGTCGAGATTCCAAAGGTTCACTCTAAAGTTTACTACTTCCCACAAGGTAATTTGGAACATGCATGTTCTTCGCCTAATGCTGCCACAATCACCATTCTTGATCGTTACCGTCCATCCATTCCATGCATCGTCTCTGCCGTTGATCTCTTTGTTGATCCTCACACCGAAGAGGTTTTTGCCAAACTGCTCCTAACTCCCGTAACTGACCAAGAACCTCCTCCTCCTGTGGTTCCCGGCCAAGAAGCCGACAATGGAAACAATCTTGTTTCCTGTGTCAAGACTCTCACACAATCTGATTGTACAAGAGTATTATGTGTACCTCGTGAATGCTCTGACTTGATCTTGCCCAAGCTTGATTTGGACGAGTCTCAGAGCATCACAGTCACCGACCTTAAAATCCGAGAATGGAGGTACACTTATACCTACGCGAAACTCAGTAGCTTACATACTGGCTGGTCTTACTTTGTACGAGAGAAGAAACTCGTCGCCAACGATTCTGTTGTTTTCATTAAAAACTCTGCCGGAACGATATTTGTCGGAATTCACAGGAATACCAACTTCACTACGGATGAAGCAGTGGTTTTAGATGCAGCGGAACTGGCGGAGAAGAACACAGCGTTTAAAGTTGTGTATTATCCGACAGCTAGTGGTTGGCGAGATTTTGTGGTGGATGCTAAGACTGTTGACGATGCCATGAAGATTGGTTGGAAATCTGGAATGAGAGTGAAGCTTCCTTTGAAGAAAGATGAATCTTCAAATTCAAAGATGACATATTCTCAGCCTAAAGGGACAATCTCTTTTGTCTTTGATGATTCTTCTAATGTACCTAATTGGCGCATGCTTGAGGTTAACTGGGATGGACCTAATATCCCACAGAATCCAAACCATATCCCACAGAATCCAAACCTAGTCAATACTTGGCAGATTGAACCTCCACCGTCAACTTCCTCCTTCATTCCTATGCAGGGAGTCAGGCATGAGCATGACCATTTATCTGTATCAGATTCATCAAAAGTTTTGAATGATAAGCATGACGGATTCACTGGGAATAGTTCAATGGCAGGGTTGAGTGGTACTTTGCCTGACATAGAGCTAAACCTTTGCAGTCCTAGAGGTGCTGACTCGTTGCCTCATAACCATAATAGGTCCAATGAGCCAAGCACCAAGTGA

Protein sequence

>MsaT029569.1

MSLPQPPSVDPKIWQKCAGPDVEIPKVHSKVYYFPQGNLEHACSSPNAATITILDRYRPSIPCIVSAVDLFVDPHTEEVFAKLLLTPVTDQEPPPPVVPGQEADNGNNLVSCVKTLTQSDCTRVLCVPRECSDLILPKLDLDESQSITVTDLKIREWRYTYTYAKLSSLHTGWSYFVREKKLVANDSVVFIKNSAGTIFVGIHRNTNFTTDEAVVLDAAELAEKNTAFKVVYYPTASGWRDFVVDAKTVDDAMKIGWKSGMRVKLPLKKDESSNSKMTYSQPKGTISFVFDDSSNVPNWRMLEVNWDGPNIPQNPNHIPQNPNLVNTWQIEPPPSTSSFIPMQGVRHEHDHLSVSDSSKVLNDKHDGFTGNSSMAGLSGTLPDIELNLCSPRGADSLPHNHNRSNEPSTK*