AlfalfaGEDB | MsaG029591

M. sativa ssp. caerulea / MsaG029591

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:1901360 GO:1901363
PFAM: PF02536.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029591	XP_003617710.2	98.990	396	2	1	2	395	108	503	0.0	796

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029591	sp\|Q9FM80\|MTEF9_ARATH	68.250	400	118	2	4	394	96	495	0.0	558

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029591	tr\|G7K4F3\|G7K4F3_MEDTR	98.990	396	2	1	2	395	108	503	0.0	796

TFs/TRs:

Gene ID	Type	Classification
MsaG029591	TR	mTERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG029591	0.801739	1.310037e-48	1.842296e-46
MsaG000180	MsaG029591	0.848765	9.428792e-60	4.899417e-57
MsaG001087	MsaG029591	0.807097	1.013545e-49	1.614153e-47
MsaG001276	MsaG029591	0.841813	7.028879e-58	2.905471e-55
MsaG001432	MsaG029591	0.801492	1.471120e-48	2.057221e-46
MsaG002029	MsaG029591	0.802739	8.175100e-49	1.176182e-46
MsaG003564	MsaG029591	0.810771	1.672084e-50	2.909664e-48
MsaG003679	MsaG029591	0.837940	7.094467e-57	2.597181e-54
MsaG004185	MsaG029591	0.810701	1.731537e-50	3.007864e-48
MsaG004648	MsaG029591	0.812535	6.942336e-51	1.261638e-48
MsaG005774	MsaG029591	0.813346	4.619338e-51	8.566111e-49
MsaG006081	MsaG029591	0.804270	3.949092e-49	5.886735e-47
MsaG006330	MsaG029591	0.802661	8.480764e-49	1.218047e-46
MsaG006855	MsaG029591	0.819821	1.662241e-52	3.638363e-50
MsaG007070	MsaG029591	0.808115	6.174679e-50	1.007642e-47
MsaG007131	MsaG029591	0.827600	2.553818e-54	6.906007e-52
MsaG007381	MsaG029591	0.808245	5.797008e-50	9.489690e-48
MsaG007568	MsaG029591	0.806038	1.691193e-49	2.626874e-47
MsaG008324	MsaG029591	0.802309	1.001440e-48	1.426766e-46
MsaG009477	MsaG029591	0.826239	5.383073e-54	1.401371e-51
MsaG009787	MsaG029591	0.824022	1.788832e-53	4.381512e-51
MsaG010290	MsaG029591	0.810222	2.194747e-50	3.768258e-48
MsaG011225	MsaG029591	0.832189	1.969573e-55	6.072233e-53
MsaG011314	MsaG029591	0.803271	6.353965e-49	9.254690e-47
MsaG011363	MsaG029591	0.828612	1.461365e-54	4.065582e-52
MsaG012170	MsaG029591	0.800048	2.890660e-48	3.912602e-46
MsaG015143	MsaG029591	0.800529	2.310320e-48	3.161209e-46
MsaG016058	MsaG029591	0.803182	6.626028e-49	9.631324e-47
MsaG016421	MsaG029591	0.801114	1.756423e-48	2.435257e-46
MsaG017501	MsaG029591	0.807479	8.420445e-50	1.353255e-47
MsaG017690	MsaG029591	0.834150	6.433044e-56	2.100640e-53
MsaG018712	MsaG029591	0.803987	4.519385e-49	6.692631e-47
MsaG020467	MsaG029591	0.809523	3.097884e-50	5.229905e-48
MsaG021553	MsaG029591	0.805554	2.135042e-49	3.278702e-47
MsaG022804	MsaG029591	0.843734	2.180305e-58	9.585374e-56
MsaG023578	MsaG029591	0.811011	1.484477e-50	2.598364e-48
MsaG023761	MsaG029591	0.802856	7.732755e-49	1.115539e-46
MsaG023762	MsaG029591	0.822763	3.510463e-53	8.310093e-51
MsaG026192	MsaG029591	0.818427	3.439460e-52	7.258337e-50
MsaG026849	MsaG029591	0.809723	2.807404e-50	4.762245e-48
MsaG026830	MsaG029591	0.809345	3.380770e-50	5.682526e-48
MsaG026831	MsaG029591	0.824548	1.346902e-53	3.346653e-51
MsaG026962	MsaG029591	0.805718	1.972851e-49	3.041399e-47
MsaG027302	MsaG029591	0.804496	3.546192e-49	5.313693e-47
MsaG028634	MsaG029591	0.812463	7.198799e-51	1.305899e-48
MsaG028804	MsaG029591	0.816309	1.025645e-51	2.049639e-49
MsaG029487	MsaG029591	0.812156	8.392842e-51	1.510860e-48
MsaG029591	MsaG030546	0.803435	5.877714e-49	8.593438e-47
MsaG029591	MsaG031191	0.814125	3.118927e-51	5.897819e-49
MsaG029591	MsaG031652	0.805392	2.308019e-49	3.531059e-47
MsaG029591	MsaG032046	0.837186	1.105191e-56	3.953662e-54
MsaG029591	MsaG032064	0.821356	7.412839e-53	1.689880e-50
MsaG029591	MsaG032928	0.823313	2.615961e-53	6.285354e-51
MsaG029591	MsaG034207	0.810959	1.523601e-50	2.663444e-48
MsaG029591	MsaG034667	0.807166	9.803042e-50	1.563770e-47
MsaG029591	MsaG035162	0.804741	3.153466e-49	4.752198e-47
MsaG029591	MsaG035239	0.805449	2.246175e-49	3.441009e-47
MsaG029591	MsaG036241	0.811664	1.073136e-50	1.908658e-48
MsaG029591	MsaG039166	0.806595	1.292767e-49	2.034707e-47
MsaG029591	MsaG039467	0.811639	1.086289e-50	1.930887e-48
MsaG029591	MsaG039807	0.802280	1.015431e-48	1.445688e-46
MsaG029591	MsaG040649	0.807681	7.630951e-50	1.232334e-47
MsaG029591	MsaG042898	0.808796	4.426468e-50	7.342854e-48
MsaG029591	MsaG043000	0.845765	6.221970e-59	2.923999e-56
MsaG029591	MsaG043924	0.822017	5.220893e-53	1.211317e-50
MsaG029591	MsaG044333	0.805816	1.882477e-49	2.908701e-47
MsaG029591	MsaG044880	0.804576	3.411944e-49	5.122098e-47
MsaG029591	MsaG044889	0.829964	6.890338e-55	1.992088e-52
MsaG029591	MsaG045016	0.819940	1.561592e-52	3.429073e-50
MsaG029591	MsaG045536	0.826550	4.541821e-54	1.192643e-51
MsaG029591	MsaG045973	0.801651	1.365299e-48	1.916154e-46
MsaG029591	MsaG046472	0.816115	1.132826e-51	2.252603e-49
MsaG029591	MsaG046703	0.831530	2.858459e-55	8.645196e-53
MsaG029591	MsaG046930	0.809786	2.720985e-50	4.622831e-48
MsaG029591	MsaG001564	0.801872	1.230765e-48	1.736074e-46
MsaG029591	MsaG000837	0.803812	4.912064e-49	7.244690e-47
MsaG029591	MsaG002984	0.835527	2.907158e-56	9.892913e-54
MsaG029591	MsaG002433	0.830800	4.312785e-55	1.277035e-52
MsaG029591	MsaG008854	0.817732	4.928960e-52	1.021697e-49
MsaG029591	MsaG013406	0.802335	9.891558e-49	1.410126e-46
MsaG029591	MsaG011633	0.818258	3.754974e-52	7.889678e-50
MsaG029591	MsaG025855	0.801415	1.525217e-48	2.129185e-46
MsaG029591	MsaG032663	0.837567	8.838980e-57	3.199010e-54
MsaG029591	MsaG034613	0.845687	6.528428e-59	3.060194e-56
MsaG029591	MsaG033153	0.811453	1.191675e-50	2.108610e-48
MsaG029591	MsaG032342	0.821058	8.675326e-53	1.962244e-50
MsaG029591	MsaG033405	0.821096	8.503049e-53	1.925158e-50
MsaG029591	MsaG033504	0.817123	6.750968e-52	1.377641e-49
MsaG029591	MsaG035918	0.802938	7.438906e-49	1.075195e-46
MsaG029591	MsaG042524	0.810043	2.397029e-50	4.097706e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029591	MtrunA17_Chr5g0445491	98.990	396	2	1	2	395	108	503	0.0	796
MsaG029591	MtrunA17_Chr2g0294671	32.456	228	139	7	122	343	215	433	8.83e-27	111
MsaG029591	MtrunA17_Chr2g0294671	27.556	225	134	6	77	295	277	478	9.03e-18	85.1
MsaG029591	MtrunA17_Chr2g0294671	30.102	196	126	5	150	341	207	395	1.06e-17	84.7
MsaG029591	MtrunA17_Chr5g0428941	25.000	328	201	7	84	373	172	492	1.46e-26	111
MsaG029591	MtrunA17_Chr5g0428941	23.932	234	169	5	113	343	134	361	2.68e-11	65.1
MsaG029591	MtrunA17_Chr2g0311181	26.639	244	161	6	119	361	70	296	4.55e-26	107
MsaG029591	MtrunA17_Chr4g0043941	28.571	266	176	6	80	340	42	298	4.81e-25	104
MsaG029591	MtrunA17_Chr4g0043941	27.948	229	161	2	118	343	41	268	5.82e-20	90.1
MsaG029591	MtrunA17_Chr5g0417641	29.319	191	132	1	153	343	88	275	9.04e-22	94.7
MsaG029591	MtrunA17_Chr6g0448821	24.465	327	194	5	85	370	49	363	1.61e-21	95.1
MsaG029591	MtrunA17_Chr4g0034981	24.080	299	185	6	79	341	274	566	4.09e-20	92.4
MsaG029591	MtrunA17_Chr4g0034981	24.476	286	198	7	68	342	184	462	2.97e-13	71.2
MsaG029591	MtrunA17_Chr1g0212691	23.636	275	199	7	68	338	161	428	1.38e-18	87.4
MsaG029591	MtrunA17_Chr1g0212691	24.254	268	187	8	86	349	81	336	8.25e-16	79.0
MsaG029591	MtrunA17_Chr8g0391881	27.064	218	152	4	122	337	162	374	9.88e-18	84.0
MsaG029591	MtrunA17_Chr8g0391881	25.000	216	153	5	86	300	59	266	3.51e-14	73.6
MsaG029591	MtrunA17_Chr7g0250261	25.984	254	173	7	117	367	42	283	4.88e-17	80.9
MsaG029591	MtrunA17_Chr0c29g0494001	25.984	254	173	7	117	367	42	283	4.88e-17	80.9
MsaG029591	MtrunA17_Chr2g0304101	23.767	223	155	4	119	337	70	281	6.00e-17	80.9
MsaG029591	MtrunA17_Chr2g0304101	30.570	193	126	6	117	308	100	285	6.76e-13	68.9
MsaG029591	MtrunA17_Chr3g0094341	22.404	183	128	5	119	300	32	201	4.02e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029591	AT5G55580.1	68.250	400	118	2	4	394	96	495	0.0	558
MsaG029591	AT5G55580.2	73.950	357	89	1	38	394	37	389	0.0	554
MsaG029591	AT5G55580.3	64.548	299	97	2	4	293	96	394	2.27e-134	390
MsaG029591	AT2G21710.1	26.148	283	199	5	87	366	320	595	1.64e-26	112
MsaG029591	AT2G21710.1	23.975	317	221	8	68	373	191	498	5.69e-13	70.9
MsaG029591	AT4G02990.2	24.316	329	202	6	84	373	180	500	8.02e-25	106
MsaG029591	AT4G02990.1	24.316	329	202	6	84	373	180	500	8.02e-25	106
MsaG029591	AT4G38160.4	26.545	275	188	6	72	340	34	300	1.10e-23	100
MsaG029591	AT4G38160.4	29.741	232	155	6	118	343	41	270	1.93e-21	94.7
MsaG029591	AT4G38160.1	26.545	275	188	6	72	340	34	300	1.10e-23	100
MsaG029591	AT4G38160.1	29.741	232	155	6	118	343	41	270	1.93e-21	94.7
MsaG029591	AT4G38160.2	26.545	275	188	6	72	340	34	300	1.31e-23	101
MsaG029591	AT4G38160.2	29.741	232	155	6	118	343	41	270	2.23e-21	95.1
MsaG029591	AT4G38160.3	26.545	275	188	6	72	340	34	300	2.13e-23	100
MsaG029591	AT4G38160.3	29.741	232	155	6	118	343	41	270	3.20e-21	94.7
MsaG029591	AT1G78930.1	27.650	217	153	3	124	340	342	554	4.82e-23	101
MsaG029591	AT1G78930.1	28.485	165	110	3	112	273	397	556	1.78e-14	75.5
MsaG029591	AT2G03050.1	26.339	224	155	5	119	340	33	248	2.04e-21	93.6
MsaG029591	AT2G03050.2	26.339	224	155	5	119	340	34	249	2.05e-21	93.6
MsaG029591	AT4G14605.2	26.484	219	154	5	122	340	236	447	8.92e-21	94.4
MsaG029591	AT4G14605.2	26.222	225	137	6	77	295	262	463	1.89e-14	75.1
MsaG029591	AT4G14605.1	26.484	219	154	5	122	340	236	447	8.92e-21	94.4
MsaG029591	AT4G14605.1	26.222	225	137	6	77	295	262	463	1.89e-14	75.1
MsaG029591	AT2G44020.1	26.421	299	174	7	84	342	145	437	1.46e-20	94.0
MsaG029591	AT2G44020.1	26.786	224	148	7	123	343	88	298	2.83e-12	68.6
MsaG029591	AT2G34620.1	26.606	218	146	4	152	365	85	292	1.56e-20	91.7
MsaG029591	AT2G21710.2	24.481	241	175	4	87	324	320	556	2.64e-20	93.2
MsaG029591	AT2G21710.2	23.975	317	221	8	68	373	191	498	6.49e-13	70.5
MsaG029591	AT2G21710.3	24.268	239	174	4	87	322	320	554	1.20e-19	91.3
MsaG029591	AT2G21710.3	23.975	317	221	8	68	373	191	498	5.93e-13	70.9
MsaG029591	AT2G36000.2	27.200	250	158	8	119	362	74	305	1.83e-19	89.0
MsaG029591	AT2G36000.1	27.200	250	158	8	119	362	74	305	2.43e-19	88.6
MsaG029591	AT3G18870.1	25.197	254	132	8	122	367	69	272	4.23e-17	81.3

Find 74 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTAAGCACCTTTGGAATTA+AGG	0.140140	5:+79139248	MsaT029591.1:CDS
AGCAATAATTTGCCCTATTT+TGG	0.169836	5:-79139487	None:intergenic
GACTCACGTTGCTTTCTTAA+TGG	0.188627	5:+79139446	MsaT029591.1:CDS
CATCTTCACAATGCTCTCTT+TGG	0.219102	5:-79139703	None:intergenic
TGACTTCAATCTCTTGTCTT+TGG	0.225373	5:-79138378	None:intergenic
CGTTGCTTTCTTAATGGGCT+TGG	0.237557	5:+79139452	MsaT029591.1:CDS
GGATGCTATTCTCTGACTTT+TGG	0.242258	5:-79138749	None:intergenic
ACATGTGCCTCTCATAAATT+TGG	0.244120	5:-79139284	None:intergenic
CTCCTTAGGAAATTTATTCT+TGG	0.307382	5:-79139777	None:intergenic
TCCAACGTATTGACATTTCA+TGG	0.312784	5:+79139640	MsaT029591.1:CDS
ATCTTCACAATGCTCTCTTT+GGG	0.327138	5:-79139702	None:intergenic
GCTAAGGTACATCGGGTATT+TGG	0.329609	5:-79140103	None:intergenic
CCAAGAGGAAATGGTCCTTT+TGG	0.331786	5:-79140186	None:intergenic
CTTGATTACTTAAGCACCTT+TGG	0.335021	5:+79139240	MsaT029591.1:CDS
TCGTCCTCGTCATAAGTTCT+TGG	0.344950	5:+79140146	MsaT029591.1:CDS
ACTCACGTTGCTTTCTTAAT+GGG	0.345489	5:+79139447	MsaT029591.1:CDS
GATGTACCTTAGCTTGTCTT+TGG	0.348758	5:+79140113	MsaT029591.1:CDS
GGCGTACCTAGTACCAAAAT+AGG	0.359195	5:+79139474	MsaT029591.1:CDS
TAGATTACTTGATGAGTCTT+GGG	0.360371	5:+79139346	MsaT029591.1:CDS
GTTGCTTTCTTAATGGGCTT+GGG	0.365837	5:+79139453	MsaT029591.1:CDS
GTTGTCTGAAGAGATTCTTT+TGG	0.368169	5:+79139197	MsaT029591.1:CDS
TTGAAGTCAAAGACAGTTGC+AGG	0.386479	5:+79138392	MsaT029591.1:CDS
GAATTTGTGGTTGCCTCAAA+AGG	0.421558	5:-79139395	None:intergenic
ATAGATTACTTGATGAGTCT+TGG	0.425881	5:+79139345	MsaT029591.1:CDS
CTGCATTACAGTATTGATGA+TGG	0.426933	5:+79139747	MsaT029591.1:CDS
ACCGTGTATTCTAGAATTTG+TGG	0.436537	5:-79139408	None:intergenic
AGATATTTAATTGAGGAAGT+TGG	0.438021	5:+79139564	MsaT029591.1:CDS
GCAGGTGCTATCTCTGTCCT+TGG	0.454121	5:+79140014	MsaT029591.1:intron
CAAAGAGAGCATTGTGAAGA+TGG	0.456446	5:+79139704	MsaT029591.1:CDS
ACTAGAGATCCAAGAGGAAA+TGG	0.462060	5:-79140195	None:intergenic
TAGACAACAAGAAAAGGAAA+AGG	0.464265	5:+79138687	MsaT029591.1:CDS
CCAAAAGGACCATTTCCTCT+TGG	0.467379	5:+79140186	MsaT029591.1:CDS
TGACAAAAGGATTCATCAGT+TGG	0.470816	5:-79140219	None:intergenic
TTCGATGGAGAAAAGATATC+CGG	0.473213	5:+79139173	MsaT029591.1:CDS
TATGACGAGGACGAATTCTC+TGG	0.474277	5:-79140137	None:intergenic
TCCAGCCCATCGTTGACAAA+AGG	0.483266	5:-79140232	None:intergenic
AATTGAGGAAGTTGGCATCA+AGG	0.486070	5:+79139572	MsaT029591.1:CDS
TCAATTAAATATCTTACTGT+TGG	0.487640	5:-79139555	None:intergenic
GATGTTTCTTAACAAAGAGT+TGG	0.488384	5:+79139674	MsaT029591.1:CDS
TACAGATAGACAACAAGAAA+AGG	0.490910	5:+79138681	MsaT029591.1:intron
TTCCAAGAATAAATTTCCTA+AGG	0.495242	5:+79139775	MsaT029591.1:CDS
AAAGCCGAAGTATTTGTACT+TGG	0.508230	5:+79140047	MsaT029591.1:CDS
GCGTACCTAGTACCAAAATA+GGG	0.510052	5:+79139475	MsaT029591.1:CDS
AACAGTAAGATATTTAATTG+AGG	0.516231	5:+79139557	MsaT029591.1:CDS
TTGTGATTCCTTAATTCCAA+AGG	0.518718	5:-79139256	None:intergenic
TCTTTGGCATTAAGATCAGT+AGG	0.525087	5:-79138362	None:intergenic
AATAAATGTATGTTCTGCAC+AGG	0.526298	5:+79139317	MsaT029591.1:CDS
CGGCTTTAGATTAGCTTCCA+AGG	0.526666	5:-79140031	None:intergenic
ATAAATTTCCTAAGGAGCAT+AGG	0.526985	5:+79139783	MsaT029591.1:CDS
TTTACCAAGTACAAATACTT+CGG	0.532246	5:-79140051	None:intergenic
AAGACAAGCTAAGGTACATC+GGG	0.535136	5:-79140110	None:intergenic
GTAGTTTCGTAGAAATTCGA+TGG	0.537172	5:+79139158	MsaT029591.1:intron
GTACATCGGGTATTTGGTCA+AGG	0.541793	5:-79140097	None:intergenic
TCCCTAAAGAAAGCTCCAAA+AGG	0.551170	5:+79140171	MsaT029591.1:CDS
TCTGGTCCAAAGACAAGCTA+AGG	0.551617	5:-79140119	None:intergenic
AGACAACAAGAAAAGGAAAA+GGG	0.551962	5:+79138688	MsaT029591.1:CDS
ATACGTTGGACAAGAATTTG+AGG	0.570242	5:-79139627	None:intergenic
ATGTATGTTCTGCACAGGAA+AGG	0.582720	5:+79139322	MsaT029591.1:CDS
AGATTACTTGATGAGTCTTG+GGG	0.589186	5:+79139347	MsaT029591.1:CDS
AAAGACAAGCTAAGGTACAT+CGG	0.593674	5:-79140111	None:intergenic
AGAATCTCTTCAGACAACTC+CGG	0.598051	5:-79139192	None:intergenic
GTGCTTAAGTAATCAAGAAG+TGG	0.598694	5:-79139234	None:intergenic
ATACTGTAATGCAGAAGCTG+AGG	0.609678	5:-79139738	None:intergenic
ACAAGAAAATAACAGTGCAA+AGG	0.615006	5:+79138774	MsaT029591.1:CDS
TACTGTAATGCAGAAGCTGA+GGG	0.620289	5:-79139737	None:intergenic
TCCATGAAATGTCAATACGT+TGG	0.626915	5:-79139641	None:intergenic
GGTAAATGAGCTTCACAATG+AGG	0.633064	5:+79140068	MsaT029591.1:CDS
GGTGTGAGATCTCTTAACAA+TGG	0.634820	5:+79138709	MsaT029591.1:CDS
AATTCATCCAAATTTATGAG+AGG	0.636805	5:+79139277	MsaT029591.1:CDS
AATCTTGACTAGCCTTACAC+AGG	0.642412	5:+79139830	MsaT029591.1:CDS
ACCACAAATTCTAGAATACA+CGG	0.657650	5:+79139407	MsaT029591.1:CDS
GTTGGAACTAGAGATCCAAG+AGG	0.745944	5:-79140201	None:intergenic
GAAACCAAGAACTTATGACG+AGG	0.752928	5:-79140150	None:intergenic
ACAAATTCTAGAATACACGG+TGG	0.791192	5:+79139410	MsaT029591.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	79138261	79140335	79138261	ID=MsaG029591
Chr5	mRNA	79138261	79140335	79138261	ID=MsaT029591.1;Parent=MsaG029591
Chr5	exon	79138261	79138263	79138261	ID=MsaT029591.1.exon1;Parent=MsaT029591.1
Chr5	CDS	79138261	79138263	79138261	ID=cds.MsaT029591.1;Parent=MsaT029591.1
Chr5	exon	79138347	79138413	79138347	ID=MsaT029591.1.exon2;Parent=MsaT029591.1
Chr5	CDS	79138347	79138413	79138347	ID=cds.MsaT029591.1;Parent=MsaT029591.1
Chr5	exon	79138686	79138795	79138686	ID=MsaT029591.1.exon3;Parent=MsaT029591.1
Chr5	CDS	79138686	79138795	79138686	ID=cds.MsaT029591.1;Parent=MsaT029591.1
Chr5	exon	79139162	79139851	79139162	ID=MsaT029591.1.exon4;Parent=MsaT029591.1
Chr5	CDS	79139162	79139851	79139162	ID=cds.MsaT029591.1;Parent=MsaT029591.1
Chr5	exon	79140018	79140335	79140018	ID=MsaT029591.1.exon5;Parent=MsaT029591.1
Chr5	CDS	79140018	79140335	79140018	ID=cds.MsaT029591.1;Parent=MsaT029591.1

Gene Sequence

>MsaT029591.1

ATGGACGGATTTGCTGAGCCTACTGATCTTAATGCCAAAGACAAGAGATTGAAGTCAAAGACAGTTGCAGATAGACAACAAGAAAAGGAAAAGGGTGTGAGATCTCTTAACAATGGACAGAGCAAAAGATTGCCCAAAAGTCAGAGAATAGCATCCTTACAAGAAAATAACAGTGCAAAGTTTCGTAGAAATTCGATGGAGAAAAGATATCCGGAGTTGTCTGAAGAGATTCTTTTGGATGAGAAATGGTTACCACTTCTTGATTACTTAAGCACCTTTGGAATTAAGGAATCACAATTCATCCAAATTTATGAGAGGCACATGTCGTCATTTCAAATAAATGTATGTTCTGCACAGGAAAGGATAGATTACTTGATGAGTCTTGGGGTTAAACATAAAGATATAAGAAGAATCCTTTTGAGGCAACCACAAATTCTAGAATACACGGTGGAGAACAATTTGAAGACTCACGTTGCTTTCTTAATGGGCTTGGGCGTACCTAGTACCAAAATAGGGCAAATTATTGCTTCTACTCCGTCCCTTTTTTCTTACAGTGTTGAGAAATCGTTAAAACCAACAGTAAGATATTTAATTGAGGAAGTTGGCATCAAGGAAAAAGATTTGGGTAAAGTCATTCAACTGAGTCCTCAAATTCTTGTCCAACGTATTGACATTTCATGGAATACTCGATTGATGTTTCTTAACAAAGAGTTGGATGCACCCAAAGAGAGCATTGTGAAGATGGTGACGAAACACCCTCAGCTTCTGCATTACAGTATTGATGATGGATTGCTTCCAAGAATAAATTTCCTAAGGAGCATAGGAATGAAAAATGCGGACATCTTGAAAATCTTGACTAGCCTTACACAGGTGCTATCTCTGTCCTTGGAAGCTAATCTAAAGCCGAAGTATTTGTACTTGGTAAATGAGCTTCACAATGAGGTGCAAACCTTGACCAAATACCCGATGTACCTTAGCTTGTCTTTGGACCAGAGAATTCGTCCTCGTCATAAGTTCTTGGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCTCTTGGATCTCTAGTTCCAACTGATGAATCCTTTTGTCAACGATGGGCTGGAACTACTCTTGATGAATATGCTGCATTTCGACAGAGATTATTGCTCAAAAAACTTGCTGAGAAATATGACAGAAAAATGTGA

Protein sequence

>MsaT029591.1

MDGFAEPTDLNAKDKRLKSKTVADRQQEKEKGVRSLNNGQSKRLPKSQRIASLQENNSAKFRRNSMEKRYPELSEEILLDEKWLPLLDYLSTFGIKESQFIQIYERHMSSFQINVCSAQERIDYLMSLGVKHKDIRRILLRQPQILEYTVENNLKTHVAFLMGLGVPSTKIGQIIASTPSLFSYSVEKSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRLMFLNKELDAPKESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLEANLKPKYLYLVNELHNEVQTLTKYPMYLSLSLDQRIRPRHKFLVSLKKAPKGPFPLGSLVPTDESFCQRWAGTTLDEYAAFRQRLLLKKLAEKYDRKM*