AlfalfaGEDB | MsaG029698

M. sativa ssp. caerulea / MsaG029698

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029698	AET00849.1	58.537	123	49	2	1	122	1	122	2.50e-45	153

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029698	tr\|G7K4S9\|G7K4S9_MEDTR	58.537	123	49	2	1	122	1	122	1.20e-45	153

TFs/TRs:

Gene ID	Type	Classification
MsaG029698	TF	MYB-related

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001506	MsaG029698	0.803352	6.113798e-49	8.921552e-47
MsaG003406	MsaG029698	0.801226	1.666936e-48	2.316979e-46
MsaG007688	MsaG029698	0.818366	3.549451e-52	7.478780e-50
MsaG011625	MsaG029698	0.811738	1.033844e-50	1.842153e-48
MsaG012470	MsaG029698	0.807719	7.489317e-50	1.210605e-47
MsaG015511	MsaG029698	0.816291	1.035235e-51	2.067837e-49
MsaG017629	MsaG029698	0.810720	1.714822e-50	2.980285e-48
MsaG021695	MsaG029698	0.815388	1.641895e-51	3.205268e-49
MsaG029606	MsaG029698	0.829181	1.065580e-54	3.012185e-52
MsaG029698	MsaG031047	0.810512	1.901425e-50	3.287894e-48
MsaG029698	MsaG044724	0.818673	3.025843e-52	6.426610e-50
MsaG029698	MsaG019521	0.819747	1.728429e-52	3.775762e-50
MsaG029698	MsaG024981	0.835556	2.857577e-56	9.732928e-54
MsaG029698	MsaG032707	0.816743	8.209635e-52	1.658944e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029698	MtrunA17_Chr5g0447061	58.537	123	49	2	1	122	1	122	2.30e-49	153

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 24 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTATATTCCTTCTTGCTTC+TGG	0.212854	5:+80266351	None:intergenic
ATCAAGGAGGAGTTGGAAAT+TGG	0.290061	5:-80266464	MsaT029698.1:CDS
TTTGTTCCACCACAAAATTA+TGG	0.333981	5:-80266282	MsaT029698.1:CDS
TTTCTTTAGGCTATTACTCA+TGG	0.421485	5:-80265986	MsaT029698.1:intron
AAGAACCTGTGGTTTGTCTC+AGG	0.425780	5:+80266393	None:intergenic
CACCACAAAATTATGGAGCT+TGG	0.430852	5:-80266275	MsaT029698.1:CDS
TGTTGGTGCGGTAACGGTCT+CGG	0.455039	5:+80265890	None:intergenic
AATCACCAGGGAGCTCTTCA+AGG	0.457956	5:+80266313	None:intergenic
TTCTTTAGGCTATTACTCAT+GGG	0.494106	5:-80265985	MsaT029698.1:intron
CATATCTGTTGGTGCGGTAA+CGG	0.499015	5:+80265884	None:intergenic
ATGGCAAATCAAGGAGGAGT+TGG	0.501152	5:-80266471	MsaT029698.1:CDS
CTGAAACTCTCAAGAACCTG+TGG	0.518744	5:+80266382	None:intergenic
CTAGAGAGATTGTGTTGACG+AGG	0.558612	5:-80265927	MsaT029698.1:CDS
ACAAATTGCTCGAAATCACC+AGG	0.563161	5:+80266300	None:intergenic
AACCTGTGGTTTGTCTCAGG+TGG	0.578043	5:+80266396	None:intergenic
ACCGCACCAACAGATATGCT+TGG	0.580278	5:-80265879	MsaT029698.1:CDS
CACTACCTTGAAGAGCTCCC+TGG	0.582630	5:-80266318	MsaT029698.1:CDS
GTTCATCCAAGCATATCTGT+TGG	0.609345	5:+80265873	None:intergenic
TCCAAGCATATCTGTTGGTG+CGG	0.624491	5:+80265878	None:intergenic
TTTACGGCCGAAAATGGACG+CGG	0.649194	5:-80265954	MsaT029698.1:CDS
TGGAGCTTGGAGTAATGATG+AGG	0.655946	5:-80266262	MsaT029698.1:CDS
TTCCACCTGAGACAAACCAC+AGG	0.670730	5:-80266398	MsaT029698.1:CDS
TTCACAATGGCAAATCAAGG+AGG	0.686222	5:-80266477	None:intergenic
CAAATTGCTCGAAATCACCA+GGG	0.727892	5:+80266301	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	80265867	80266493	80265867	ID=MsaG029698
Chr5	mRNA	80265867	80266493	80265867	ID=MsaT029698.1;Parent=MsaG029698
Chr5	exon	80265867	80265999	80265867	ID=MsaT029698.1.exon2;Parent=MsaT029698.1
Chr5	CDS	80265867	80265999	80265867	ID=cds.MsaT029698.1;Parent=MsaT029698.1
Chr5	exon	80266258	80266493	80266258	ID=MsaT029698.1.exon1;Parent=MsaT029698.1
Chr5	CDS	80266258	80266493	80266258	ID=cds.MsaT029698.1;Parent=MsaT029698.1

Gene Sequence	>MsaT029698.1 ATGGCAAATCAAGGAGGAGTTGGAAATTGGAACGTAGATGATACATTGATGCTTAGACAAGCAATGATAATATTTCCACCTGAGACAAACCACAGGTTCTTGAGAGTTTCAGAAATTTTTCCAGAAGCAAGAAGGAATATAACTCTTTTGCAACACTACCTTGAAGAGCTCCCTGGTGATTTCGAGCAATTTGTTCCACCACAAAATTATGGAGCTTGGAGTAATGATGAGGATCAGCTATTACTCATGGGATTGAGATTTTACGGCCGAAAATGGACGCGGATTTCTAGAGAGATTGTGTTGACGAGGAACGCATCGCAATGCCGAGACCGTTACCGCACCAACAGATATGCTTGGATGAACTTTTAG
Protein sequence	>MsaT029698.1 MANQGGVGNWNVDDTLMLRQAMIIFPPETNHRFLRVSEIFPEARRNITLLQHYLEELPGDFEQFVPPQNYGAWSNDEDQLLLMGLRFYGRKWTRISREIVLTRNASQCRDRYRTNRYAWMNF*