AlfalfaGEDB | MsaG029709

M. sativa ssp. caerulea / MsaG029709

KEGG: K10523
GO: GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029709	sp\|Q680K8\|Y1576_ARATH	41.846	325	154	9	20	322	8	319	3.04e-69	222

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029709	tr\|G7K4U5\|G7K4U5_MEDTR	90.997	311	20	2	20	322	8	318	0.0	570

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TFs/TRs:

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Gene ID	Type	Classification
MsaG029709	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000781	MsaG029709	0.862101	1.272135e-63	1.071810e-60
MsaG002435	MsaG029709	0.813376	4.551407e-51	8.446480e-49
MsaG002826	MsaG029709	0.849790	4.903763e-60	2.638749e-57
MsaG002888	MsaG029709	0.837844	7.510303e-57	2.741210e-54
MsaG005434	MsaG029709	0.824126	1.691011e-53	4.153552e-51
MsaG005847	MsaG029709	0.821011	8.893923e-53	2.009227e-50
MsaG006759	MsaG029709	0.814699	2.331813e-51	4.473445e-49
MsaG008892	MsaG029709	0.841064	1.104012e-57	4.456690e-55
MsaG009484	MsaG029709	0.821903	5.547908e-53	1.283253e-50
MsaG010332	MsaG029709	0.835007	3.926691e-56	1.315621e-53

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029709	MtrunA17_Chr5g0447191	95.092	163	8	0	160	322	21	183	1.69e-110	319
MsaG029709	MtrunA17_Chr5g0447111	43.385	325	149	10	20	322	10	321	3.64e-75	234
MsaG029709	MtrunA17_Chr3g0103031	43.807	331	150	9	20	327	8	325	3.44e-74	232
MsaG029709	MtrunA17_Chr3g0124921	34.513	339	182	11	16	329	1	324	2.50e-51	172
MsaG029709	MtrunA17_Chr1g0159831	32.326	331	182	10	20	322	6	322	5.58e-48	164
MsaG029709	MtrunA17_Chr4g0029841	35.047	214	117	3	116	322	76	274	4.77e-31	118

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029709	AT1G55760.1	41.846	325	154	9	20	322	8	319	3.09e-70	222
MsaG029709	AT1G21780.2	36.615	325	170	11	20	322	6	316	1.67e-55	184
MsaG029709	AT1G21780.1	36.615	325	170	11	20	322	6	316	1.67e-55	184

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Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAATGAACCATTTCT+TGG	0.257328	5:-80444106	None:intergenic
AAAGGCACATATCATTCTCG+AGG	0.636899	5:-80441953	MsaT029709.1:intron
AACCATTTCTTGGATGATGA+TGG	0.525067	5:-80444096	MsaT029709.1:CDS
AAGCTTTCAAGATATCTAAA+TGG	0.359355	5:-80442204	MsaT029709.1:CDS
AAGGCACATATCATTCTCGA+GGG	0.667706	5:-80441952	MsaT029709.1:CDS
AATTTGAAAGATGCAATTGG+TGG	0.524532	5:+80441873	None:intergenic
ACACAGGATGTTGTAACATC+AGG	0.530431	5:+80441287	None:intergenic
AGCGCAACTAATCTTCAAGT+AGG	0.555426	5:+80440647	None:intergenic
ATACTTTCTCTTTCGAACAA+GGG	0.607778	5:+80441029	None:intergenic
ATATTCAAACATAGGTGACC+GGG	0.654376	5:+80440935	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	80440515	80444121	80440515	ID=MsaG029709
Chr5	mRNA	80440515	80444121	80440515	ID=MsaT029709.1;Parent=MsaG029709
Chr5	exon	80440515	80441065	80440515	ID=MsaT029709.1.exon5;Parent=MsaT029709.1
Chr5	CDS	80440515	80441065	80440515	ID=cds.MsaT029709.1;Parent=MsaT029709.1
Chr5	exon	80441243	80441374	80441243	ID=MsaT029709.1.exon4;Parent=MsaT029709.1
Chr5	CDS	80441243	80441374	80441243	ID=cds.MsaT029709.1;Parent=MsaT029709.1
Chr5	exon	80441823	80441971	80441823	ID=MsaT029709.1.exon3;Parent=MsaT029709.1
Chr5	CDS	80441823	80441971	80441823	ID=cds.MsaT029709.1;Parent=MsaT029709.1
Chr5	exon	80442199	80442310	80442199	ID=MsaT029709.1.exon2;Parent=MsaT029709.1
Chr5	CDS	80442199	80442310	80442199	ID=cds.MsaT029709.1;Parent=MsaT029709.1
Chr5	exon	80444064	80444121	80444064	ID=MsaT029709.1.exon1;Parent=MsaT029709.1
Chr5	CDS	80444064	80444121	80444064	ID=cds.MsaT029709.1;Parent=MsaT029709.1

Gene Sequence

>MsaT029709.1

ATGAACCATTTCTTGGATGATGATGGTCCTCTGTCCAAAAATGAGGTGGTAGACCTAGTGGAATCCGTGGGTTACGTCGCTCAATGGAGACTCAGCTTTAAGAGCATGAATATGATTCCCCACAGTTTTATCCACACATCCGAAGCTTTCAAGATATCTAAATGGAATTGGCACATATCATTCTCGAGGGATTCCCTTTCCAGTCCGGTTACTATCAAATTATATGCAGAAGAGTCCACAAATAATCCACCAATTGCATCTTTCAAATTCCGTATTCTTGACTCTATCGGAAAAAATGGAATAACCTTCGCAGAGACGGAAGAAAAAGACAAGCTTTTCACCAGCGAAACTGATGCATTTAACTGGGAGTTTGATGTTCGACTACCTGATGTTACAACATCCTGTGTTGAAGTTGAATTCCTAGATCTCAAGACTGCAAACCCAAATGTACGAAAAGATCAACAACCCTTGTTCGAAAGAGAAAGTATCCACACAGACGCTACAATCAAGCTCGTATCATCAGATAAAATCATAAGAGTTCATCTAGCTGTTCTTGCTGCCCGGTCACCTATGTTTGAATATATGTTTGCACAAGATTCTAAGGAGAATAACATGTCTGTTATTAACATCTCAGATATGTCACCTGAAGTTTGTCAAGCATTCATAGATTATCTATATGACAACATCGACGATGAAGAACTTGCGAATCATAGTTTCGAGCTATTGGTTGCTGCTGAGAAATACGGCGTTAATGATTTGAGAGAGGAGTGTGAAAAGAGTCTTCAAGAAGATATCAACAGAAAAAATATACTTGAGAGGCTCCATGCTGCATATTTCTATCAATTGCCCTACTTGAAGATTAGTTGCGCTCAATATCTAGTGGAATTTGGTAAAATACATGAAATCTGGGATGATTTTCTTGCCTTCCTAAAATTGGCAGATGATGATGTAATTTGCGAAATTTTCTTAGTTAAACTAGGTTTGAGTACCTTTCAGTTTTGA

Protein sequence

>MsaT029709.1

MNHFLDDDGPLSKNEVVDLVESVGYVAQWRLSFKSMNMIPHSFIHTSEAFKISKWNWHISFSRDSLSSPVTIKLYAEESTNNPPIASFKFRILDSIGKNGITFAETEEKDKLFTSETDAFNWEFDVRLPDVTTSCVEVEFLDLKTANPNVRKDQQPLFERESIHTDATIKLVSSDKIIRVHLAVLAARSPMFEYMFAQDSKENNMSVINISDMSPEVCQAFIDYLYDNIDDEELANHSFELLVAAEKYGVNDLREECEKSLQEDINRKNILERLHAAYFYQLPYLKISCAQYLVEFGKIHEIWDDFLAFLKLADDDVICEIFLVKLGLSTFQF*