AlfalfaGEDB | MsaG029709

M. sativa ssp. caerulea / MsaG029709

KEGG: K10523
GO: GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234
PFAM: PF00651.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029709	sp\|Q680K8\|Y1576_ARATH	41.846	325	154	9	20	322	8	319	3.04e-69	222

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029709	tr\|G7K4U5\|G7K4U5_MEDTR	90.997	311	20	2	20	322	8	318	0.0	570

TFs/TRs:

Gene ID	Type	Classification
MsaG029709	TR	TRAF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG002435	MsaG029709	0.813376	4.551407e-51	8.446480e-49
MsaG002826	MsaG029709	0.849790	4.903763e-60	2.638749e-57
MsaG002888	MsaG029709	0.837844	7.510303e-57	2.741210e-54
MsaG005434	MsaG029709	0.824126	1.691011e-53	4.153552e-51
MsaG005847	MsaG029709	0.821011	8.893923e-53	2.009227e-50
MsaG006759	MsaG029709	0.814699	2.331813e-51	4.473445e-49
MsaG008892	MsaG029709	0.841064	1.104012e-57	4.456690e-55
MsaG009484	MsaG029709	0.821903	5.547908e-53	1.283253e-50
MsaG010332	MsaG029709	0.835007	3.926691e-56	1.315621e-53
MsaG010334	MsaG029709	0.852446	8.804339e-61	5.195049e-58
MsaG010573	MsaG029709	0.841136	1.057759e-57	4.279490e-55
MsaG011229	MsaG029709	0.803206	6.550613e-49	9.526966e-47
MsaG011413	MsaG029709	0.840641	1.424251e-57	5.672847e-55
MsaG044568	MsaG029709	0.803490	5.724627e-49	8.380421e-47
MsaG044703	MsaG029709	0.871558	1.275083e-66	1.578814e-63
MsaG045139	MsaG029709	0.810513	1.900650e-50	3.286638e-48
MsaG045122	MsaG029709	0.818980	2.579317e-52	5.522656e-50
MsaG045348	MsaG029709	0.827940	2.117977e-54	5.782199e-52
MsaG046304	MsaG029709	0.800523	2.316005e-48	3.168599e-46
MsaG000781	MsaG029709	0.862101	1.272135e-63	1.071810e-60
MsaG013963	MsaG029709	0.830149	6.210649e-55	1.805109e-52
MsaG020089	MsaG029709	0.818339	3.600663e-52	7.581282e-50
MsaG018616	MsaG029709	0.887496	2.950359e-72	7.650007e-69
MsaG026757	MsaG029709	0.879816	1.929532e-69	3.453007e-66
MsaG029709	MsaG027799	0.808786	4.447396e-50	7.375901e-48
MsaG029709	MsaG031442	0.808514	5.081323e-50	8.372087e-48
MsaG013453	MsaG029709	0.802700	8.324785e-49	1.196668e-46
MsaG015621	MsaG029709	0.820431	1.206848e-52	2.684868e-50
MsaG015725	MsaG029709	0.804071	4.343005e-49	6.444192e-47
MsaG015769	MsaG029709	0.821361	7.392672e-53	1.685508e-50
MsaG020193	MsaG029709	0.805632	2.056508e-49	3.163985e-47
MsaG021799	MsaG029709	0.841043	1.118160e-57	4.510655e-55
MsaG022388	MsaG029709	0.816068	1.160426e-51	2.304702e-49
MsaG024762	MsaG029709	0.815493	1.556352e-51	3.046283e-49
MsaG028557	MsaG029709	0.850970	2.296328e-60	1.286907e-57
MsaG030382	MsaG029709	0.817241	6.352636e-52	1.300318e-49
MsaG030657	MsaG029709	0.813292	4.747628e-51	8.791848e-49
MsaG030768	MsaG029709	0.812172	8.324285e-51	1.499154e-48
MsaG030833	MsaG029709	0.846651	3.578773e-59	1.731974e-56
MsaG032531	MsaG029709	0.854909	1.736977e-61	1.118455e-58
MsaG033878	MsaG029709	0.872093	8.487303e-67	1.075207e-63
MsaG034933	MsaG029709	0.879647	2.213589e-69	3.930788e-66
MsaG036271	MsaG029709	0.821699	6.181250e-53	1.422048e-50
MsaG036689	MsaG029709	0.819861	1.627764e-52	3.566744e-50
MsaG037332	MsaG029709	0.862175	1.207335e-63	1.020195e-60
MsaG037333	MsaG029709	0.812976	5.564356e-51	1.022367e-48
MsaG040742	MsaG029709	0.801872	1.230268e-48	1.735397e-46
MsaG040955	MsaG029709	0.805841	1.859671e-49	2.875204e-47
MsaG041557	MsaG029709	0.869903	4.439881e-66	5.124072e-63
MsaG041550	MsaG029709	0.829212	1.047549e-54	2.963787e-52
MsaG041563	MsaG029709	0.810556	1.860563e-50	3.220662e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029709	MtrunA17_Chr5g0447191	95.092	163	8	0	160	322	21	183	1.69e-110	319
MsaG029709	MtrunA17_Chr5g0447111	43.385	325	149	10	20	322	10	321	3.64e-75	234
MsaG029709	MtrunA17_Chr3g0103031	43.807	331	150	9	20	327	8	325	3.44e-74	232
MsaG029709	MtrunA17_Chr3g0124921	34.513	339	182	11	16	329	1	324	2.50e-51	172
MsaG029709	MtrunA17_Chr1g0159831	32.326	331	182	10	20	322	6	322	5.58e-48	164
MsaG029709	MtrunA17_Chr4g0029841	35.047	214	117	3	116	322	76	274	4.77e-31	118

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029709	AT1G55760.1	41.846	325	154	9	20	322	8	319	3.09e-70	222
MsaG029709	AT1G21780.2	36.615	325	170	11	20	322	6	316	1.67e-55	184
MsaG029709	AT1G21780.1	36.615	325	170	11	20	322	6	316	1.67e-55	184

Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCTCAATATCTAGTGGAATT+TGG	0.233852	5:-80440627	MsaT029709.1:CDS
AAAACCAATGAACCATTTCT+TGG	0.257328	5:-80444106	None:intergenic
TGATTAAATGCACGTACATT+TGG	0.280709	5:+80441230	None:intergenic
TTGGTAAAATACATGAAATC+TGG	0.300649	5:-80440608	MsaT029709.1:CDS
GGTTTGCAGTCTTGAGATCT+AGG	0.312817	5:+80441252	None:intergenic
TCAAGATATCTAAATGGAAT+TGG	0.352470	5:-80442198	MsaT029709.1:intron
GCGAAACTGATGCATTTAAC+TGG	0.358814	5:-80441328	MsaT029709.1:CDS
AAGCTTTCAAGATATCTAAA+TGG	0.359355	5:-80442204	MsaT029709.1:CDS
GATTAAATGCACGTACATTT+GGG	0.365879	5:+80441231	None:intergenic
TATGTTTGCACAAGATTCTA+AGG	0.372257	5:-80440913	MsaT029709.1:CDS
GCATATAATTTGATAGTAAC+CGG	0.381945	5:+80441915	None:intergenic
TTTAGATATCTTGAAAGCTT+CGG	0.402228	5:+80442207	None:intergenic
GAATCATAGTTTCGAGCTAT+TGG	0.408610	5:-80440790	MsaT029709.1:CDS
ATGAATGCTTGACAAACTTC+AGG	0.409567	5:+80440852	None:intergenic
TCATCCAAGAAATGGTTCAT+TGG	0.410202	5:+80444102	None:intergenic
ATCTAGCTGTTCTTGCTGCC+CGG	0.416939	5:-80440953	MsaT029709.1:CDS
CGGAATTTGAAAGATGCAAT+TGG	0.422404	5:+80441870	None:intergenic
GACCATCATCATCCAAGAAA+TGG	0.432953	5:+80444094	None:intergenic
CCGTGGGTTACGTCGCTCAA+TGG	0.441645	5:-80442282	MsaT029709.1:CDS
GATAGTAACCGGACTGGAAA+GGG	0.453381	5:+80441926	None:intergenic
TGCAATTGGTGGATTATTTG+TGG	0.455591	5:+80441884	None:intergenic
TTCCGATAGAGTCAAGAATA+CGG	0.466943	5:+80441850	None:intergenic
TTCCGTATTCTTGACTCTAT+CGG	0.469882	5:-80441852	MsaT029709.1:CDS
GAGGGATTCCCTTTCCAGTC+CGG	0.470003	5:-80441934	MsaT029709.1:CDS
TGGTAAAATACATGAAATCT+GGG	0.484453	5:-80440607	MsaT029709.1:CDS
TTGGTTGCTGCTGAGAAATA+CGG	0.484832	5:-80440771	MsaT029709.1:CDS
TGGAATAACCTTCGCAGAGA+CGG	0.491897	5:-80441823	MsaT029709.1:CDS
GGAATAACCTTCGCAGAGAC+GGG	0.508589	5:-80441822	MsaT029709.1:intron
AATTTGAAAGATGCAATTGG+TGG	0.524532	5:+80441873	None:intergenic
AACCATTTCTTGGATGATGA+TGG	0.525067	5:-80444096	MsaT029709.1:CDS
ACACAGGATGTTGTAACATC+AGG	0.530431	5:+80441287	None:intergenic
GTTAAATGCATCAGTTTCGC+TGG	0.535589	5:+80441331	None:intergenic
TATATTCAAACATAGGTGAC+CGG	0.536701	5:+80440934	None:intergenic
TGATAGTAACCGGACTGGAA+AGG	0.543693	5:+80441925	None:intergenic
GATACTTTCTCTTTCGAACA+AGG	0.552217	5:+80441028	None:intergenic
AGCGCAACTAATCTTCAAGT+AGG	0.555426	5:+80440647	None:intergenic
TCTTGAAAGCTTCGGATGTG+TGG	0.556978	5:+80442215	None:intergenic
TCCATTCAAAGTGGAATCCG+TGG	0.560598	5:-80442299	MsaT029709.1:intron
GCAAACATATATTCAAACAT+AGG	0.563128	5:+80440927	None:intergenic
CGAAACTGATGCATTTAACT+GGG	0.567854	5:-80441327	MsaT029709.1:CDS
TAATTTGATAGTAACCGGAC+TGG	0.592751	5:+80441920	None:intergenic
GCGCAACTAATCTTCAAGTA+GGG	0.602481	5:+80440648	None:intergenic
TAGGAATTCAACTTCAACAC+AGG	0.603549	5:+80441271	None:intergenic
CCATTGAGCGACGTAACCCA+CGG	0.604930	5:+80442282	None:intergenic
CGGCGTTAATGATTTGAGAG+AGG	0.605267	5:-80440751	MsaT029709.1:CDS
ATACTTTCTCTTTCGAACAA+GGG	0.607778	5:+80441029	None:intergenic
GGATGTGTGGATAAAACTGT+GGG	0.608090	5:+80442228	None:intergenic
TAGTTGCGCTCAATATCTAG+TGG	0.608180	5:-80440634	MsaT029709.1:CDS
CCATTCAAAGTGGAATCCGT+GGG	0.610952	5:-80442298	MsaT029709.1:intron
ATTGATAGAAATATGCAGCA+TGG	0.618155	5:+80440673	None:intergenic
AAAGGCACATATCATTCTCG+AGG	0.636899	5:-80441953	MsaT029709.1:intron
CGGATGTGTGGATAAAACTG+TGG	0.637469	5:+80442227	None:intergenic
ATATTCAAACATAGGTGACC+GGG	0.654376	5:+80440935	None:intergenic
AAGGCACATATCATTCTCGA+GGG	0.667706	5:-80441952	MsaT029709.1:CDS
GCTTGATTGTAGCGTCTGTG+TGG	0.704769	5:+80441006	None:intergenic
GATGTGTGGATAAAACTGTG+GGG	0.837656	5:+80442229	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	80440515	80444121	80440515	ID=MsaG029709
Chr5	mRNA	80440515	80444121	80440515	ID=MsaT029709.1;Parent=MsaG029709
Chr5	exon	80440515	80441065	80440515	ID=MsaT029709.1.exon5;Parent=MsaT029709.1
Chr5	CDS	80440515	80441065	80440515	ID=cds.MsaT029709.1;Parent=MsaT029709.1
Chr5	exon	80441243	80441374	80441243	ID=MsaT029709.1.exon4;Parent=MsaT029709.1
Chr5	CDS	80441243	80441374	80441243	ID=cds.MsaT029709.1;Parent=MsaT029709.1
Chr5	exon	80441823	80441971	80441823	ID=MsaT029709.1.exon3;Parent=MsaT029709.1
Chr5	CDS	80441823	80441971	80441823	ID=cds.MsaT029709.1;Parent=MsaT029709.1
Chr5	exon	80442199	80442310	80442199	ID=MsaT029709.1.exon2;Parent=MsaT029709.1
Chr5	CDS	80442199	80442310	80442199	ID=cds.MsaT029709.1;Parent=MsaT029709.1
Chr5	exon	80444064	80444121	80444064	ID=MsaT029709.1.exon1;Parent=MsaT029709.1
Chr5	CDS	80444064	80444121	80444064	ID=cds.MsaT029709.1;Parent=MsaT029709.1

Gene Sequence

>MsaT029709.1

ATGAACCATTTCTTGGATGATGATGGTCCTCTGTCCAAAAATGAGGTGGTAGACCTAGTGGAATCCGTGGGTTACGTCGCTCAATGGAGACTCAGCTTTAAGAGCATGAATATGATTCCCCACAGTTTTATCCACACATCCGAAGCTTTCAAGATATCTAAATGGAATTGGCACATATCATTCTCGAGGGATTCCCTTTCCAGTCCGGTTACTATCAAATTATATGCAGAAGAGTCCACAAATAATCCACCAATTGCATCTTTCAAATTCCGTATTCTTGACTCTATCGGAAAAAATGGAATAACCTTCGCAGAGACGGAAGAAAAAGACAAGCTTTTCACCAGCGAAACTGATGCATTTAACTGGGAGTTTGATGTTCGACTACCTGATGTTACAACATCCTGTGTTGAAGTTGAATTCCTAGATCTCAAGACTGCAAACCCAAATGTACGAAAAGATCAACAACCCTTGTTCGAAAGAGAAAGTATCCACACAGACGCTACAATCAAGCTCGTATCATCAGATAAAATCATAAGAGTTCATCTAGCTGTTCTTGCTGCCCGGTCACCTATGTTTGAATATATGTTTGCACAAGATTCTAAGGAGAATAACATGTCTGTTATTAACATCTCAGATATGTCACCTGAAGTTTGTCAAGCATTCATAGATTATCTATATGACAACATCGACGATGAAGAACTTGCGAATCATAGTTTCGAGCTATTGGTTGCTGCTGAGAAATACGGCGTTAATGATTTGAGAGAGGAGTGTGAAAAGAGTCTTCAAGAAGATATCAACAGAAAAAATATACTTGAGAGGCTCCATGCTGCATATTTCTATCAATTGCCCTACTTGAAGATTAGTTGCGCTCAATATCTAGTGGAATTTGGTAAAATACATGAAATCTGGGATGATTTTCTTGCCTTCCTAAAATTGGCAGATGATGATGTAATTTGCGAAATTTTCTTAGTTAAACTAGGTTTGAGTACCTTTCAGTTTTGA

Protein sequence

>MsaT029709.1

MNHFLDDDGPLSKNEVVDLVESVGYVAQWRLSFKSMNMIPHSFIHTSEAFKISKWNWHISFSRDSLSSPVTIKLYAEESTNNPPIASFKFRILDSIGKNGITFAETEEKDKLFTSETDAFNWEFDVRLPDVTTSCVEVEFLDLKTANPNVRKDQQPLFERESIHTDATIKLVSSDKIIRVHLAVLAARSPMFEYMFAQDSKENNMSVINISDMSPEVCQAFIDYLYDNIDDEELANHSFELLVAAEKYGVNDLREECEKSLQEDINRKNILERLHAAYFYQLPYLKISCAQYLVEFGKIHEIWDDFLAFLKLADDDVICEIFLVKLGLSTFQF*