AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG029771

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG029771 MtrunA17_Chr5g0447701 92.583 391 24 1 1 386 1 391 0.0 724
MsaG029771 MtrunA17_Chr5g0447711 53.312 317 131 4 1 317 1 300 5.36e-108 319
MsaG029771 MtrunA17_Chr7g0243891 45.923 233 116 5 85 310 208 437 2.06e-56 193
MsaG029771 MtrunA17_Chr3g0106491 41.288 264 128 5 80 323 185 441 2.08e-53 184
MsaG029771 MtrunA17_Chr5g0432161 45.000 240 110 6 93 310 245 484 6.69e-53 184
MsaG029771 MtrunA17_Chr5g0432161 46.067 89 47 1 218 306 215 302 7.17e-16 79.3
MsaG029771 MtrunA17_Chr3g0101131 41.700 247 119 5 84 309 235 477 3.90e-52 183
MsaG029771 MtrunA17_Chr3g0101131 45.455 88 47 1 219 306 215 301 3.38e-15 77.4
MsaG029771 MtrunA17_Chr5g0445311 42.105 247 128 4 91 325 199 442 7.17e-52 181
MsaG029771 MtrunA17_Chr5g0418191 38.571 280 149 5 52 309 104 382 5.35e-50 174
MsaG029771 MtrunA17_Chr5g0418191 48.485 66 33 1 90 154 318 383 4.61e-12 67.0
MsaG029771 MtrunA17_Chr7g0249311 39.427 279 111 5 89 309 176 454 1.14e-49 177
MsaG029771 MtrunA17_Chr4g0004911 40.927 259 131 6 86 329 176 427 1.42e-49 174
MsaG029771 MtrunA17_Chr7g0218081 37.370 289 125 6 84 327 220 497 1.44e-48 172
MsaG029771 MtrunA17_Chr4g0042831 40.359 223 109 4 88 309 141 340 9.47e-46 161
MsaG029771 MtrunA17_Chr4g0042831 45.570 79 37 2 82 154 263 341 7.43e-13 69.3
MsaG029771 MtrunA17_Chr7g0263531 38.462 234 121 4 93 306 190 420 5.75e-45 160
MsaG029771 MtrunA17_Chr7g0263531 34.921 126 70 3 248 370 190 306 5.49e-15 76.3
MsaG029771 MtrunA17_Chr7g0263531 40.217 92 49 2 70 155 334 425 3.99e-13 70.5
MsaG029771 MtrunA17_Chr4g0074001 34.694 245 110 6 93 303 187 415 6.59e-35 134
MsaG029771 MtrunA17_Chr4g0074001 45.161 62 33 1 90 150 357 418 7.89e-12 66.6
MsaG029771 MtrunA17_Chr4g0009881 55.238 105 46 1 76 180 1 104 2.21e-31 115
MsaG029771 MtrunA17_Chr3g0079691 58.000 100 41 1 210 309 459 557 1.24e-29 120
MsaG029771 MtrunA17_Chr3g0079691 61.667 60 23 0 91 150 279 338 1.97e-20 93.2
MsaG029771 MtrunA17_Chr3g0079691 46.465 99 40 4 215 306 246 338 2.98e-14 74.3
MsaG029771 MtrunA17_Chr3g0079691 45.833 72 38 1 90 160 493 564 2.20e-12 68.6
MsaG029771 MtrunA17_Chr7g0249301 51.579 95 46 0 234 328 279 373 1.71e-28 114
MsaG029771 MtrunA17_Chr7g0249301 56.757 74 29 1 89 159 59 132 4.76e-20 90.9
MsaG029771 MtrunA17_Chr7g0249301 51.562 64 30 1 90 152 290 353 9.68e-13 68.9
MsaG029771 MtrunA17_Chr7g0249301 37.143 105 64 2 202 306 18 120 9.77e-13 68.9
MsaG029771 MtrunA17_Chr1g0150801 53.333 90 40 1 216 303 69 158 2.68e-25 100
MsaG029771 MtrunA17_Chr1g0150801 42.623 61 34 1 89 148 99 159 5.86e-11 60.8
MsaG029771 MtrunA17_Chr7g0270831 50.000 86 41 2 232 315 201 286 2.61e-23 100
MsaG029771 MtrunA17_Chr7g0270831 45.588 68 35 2 90 155 214 281 5.66e-12 67.0
MsaG029771 MtrunA17_Chr2g0322391 50.000 92 44 2 226 315 328 419 3.03e-23 101
MsaG029771 MtrunA17_Chr4g0075201 50.526 95 40 3 221 308 236 330 5.59e-23 100
MsaG029771 MtrunA17_Chr3g0099641 40.517 116 66 3 202 315 207 321 1.00e-22 99.4
MsaG029771 MtrunA17_Chr3g0099641 47.619 63 31 2 90 150 249 311 2.31e-11 65.1
MsaG029771 MtrunA17_Chr4g0051881 55.056 89 36 2 234 321 165 250 6.18e-22 95.5
MsaG029771 MtrunA17_Chr4g0051881 51.515 66 23 2 92 152 178 239 4.52e-13 69.7
MsaG029771 MtrunA17_Chr7g0270191 57.333 75 32 0 232 306 130 204 6.83e-22 94.7
MsaG029771 MtrunA17_Chr7g0270191 50.000 60 29 1 92 150 145 204 1.26e-11 65.1
MsaG029771 MtrunA17_Chr8g0383251 48.387 93 46 1 216 306 75 167 8.71e-22 91.7
MsaG029771 MtrunA17_Chr4g0051181 52.500 80 37 1 230 308 226 305 9.04e-22 96.7
MsaG029771 MtrunA17_Chr2g0288871 43.000 100 55 2 209 306 267 366 9.15e-22 97.1
MsaG029771 MtrunA17_Chr2g0288871 47.619 63 31 2 90 150 303 365 2.04e-11 65.5
MsaG029771 MtrunA17_Chr4g0025061 46.392 97 45 3 226 315 334 430 1.49e-21 96.7
MsaG029771 MtrunA17_Chr2g0294231 56.579 76 33 0 232 307 188 263 1.64e-21 95.1
MsaG029771 MtrunA17_Chr2g0294231 52.542 59 27 1 93 150 204 262 1.11e-12 68.9
MsaG029771 MtrunA17_Chr1g0188941 49.333 75 38 0 229 303 33 107 2.13e-21 88.6
MsaG029771 MtrunA17_Chr5g0443131 58.108 74 31 0 234 307 144 217 4.24e-21 92.8
MsaG029771 MtrunA17_Chr8g0335811 52.703 74 35 0 232 305 139 212 5.24e-21 90.9
MsaG029771 MtrunA17_Chr8g0335811 49.254 67 32 2 90 154 152 218 6.76e-12 64.7
MsaG029771 MtrunA17_Chr3g0129361 51.351 74 36 0 232 305 129 202 1.37e-20 89.4
MsaG029771 MtrunA17_Chr1g0150271 39.062 128 57 5 234 340 86 213 2.15e-20 89.7
MsaG029771 MtrunA17_Chr1g0150271 40.580 69 39 2 90 156 99 167 8.69e-11 62.0
MsaG029771 MtrunA17_Chr7g0224801 55.224 67 30 0 237 303 83 149 5.33e-20 86.7
MsaG029771 MtrunA17_Chr7g0224801 48.333 60 30 1 90 148 91 150 5.95e-13 66.6
MsaG029771 MtrunA17_Chr8g0386241 39.175 97 57 1 207 303 65 159 5.42e-20 86.7
MsaG029771 MtrunA17_Chr8g0386241 51.562 64 30 1 90 152 101 164 1.46e-13 68.6
MsaG029771 MtrunA17_Chr3g0136961 52.703 74 32 3 233 303 122 195 6.20e-20 89.4
MsaG029771 MtrunA17_Chr2g0302391 41.593 113 60 3 218 328 182 290 1.08e-19 90.1
MsaG029771 MtrunA17_Chr1g0194481 49.438 89 38 1 232 313 143 231 1.30e-19 89.0
MsaG029771 MtrunA17_Chr1g0194481 40.659 91 49 2 92 177 158 248 1.59e-13 70.9
MsaG029771 MtrunA17_Chr5g0418781 58.571 70 29 0 234 303 111 180 1.54e-19 87.8
MsaG029771 MtrunA17_Chr5g0418781 54.386 57 25 1 92 147 124 180 4.14e-12 66.2
MsaG029771 MtrunA17_Chr6g0485431 38.095 126 77 1 182 306 89 214 1.79e-19 89.0
MsaG029771 MtrunA17_Chr3g0129321 51.351 74 36 0 234 307 105 178 1.87e-19 85.9
MsaG029771 MtrunA17_Chr3g0129321 42.667 75 42 1 89 162 115 189 5.18e-12 64.7
MsaG029771 MtrunA17_Chr4g0025051 48.193 83 42 1 226 307 314 396 2.14e-19 90.1
MsaG029771 MtrunA17_Chr4g0068541 49.333 75 38 0 233 307 194 268 2.21e-19 89.4
MsaG029771 MtrunA17_Chr4g0068541 52.542 59 27 1 93 150 209 267 3.98e-11 64.3
MsaG029771 MtrunA17_Chr1g0150281 53.425 73 31 2 234 303 125 197 2.92e-19 87.0
MsaG029771 MtrunA17_Chr4g0060271 50.000 76 37 1 232 306 240 315 3.39e-19 89.4
MsaG029771 MtrunA17_Chr7g0216891 52.113 71 33 1 234 303 206 276 1.07e-18 87.8
MsaG029771 MtrunA17_Chr7g0238921 57.377 61 26 0 244 304 121 181 1.10e-18 85.9
MsaG029771 MtrunA17_Chr8g0383351 50.667 75 36 1 232 305 144 218 1.12e-18 84.3
MsaG029771 MtrunA17_Chr4g0001361 51.948 77 34 3 233 306 146 222 4.53e-18 84.3
MsaG029771 MtrunA17_Chr4g0001361 44.444 63 33 2 90 150 160 222 1.50e-11 65.1
MsaG029771 MtrunA17_Chr1g0189391 40.000 95 56 1 212 305 62 156 4.62e-18 84.3
MsaG029771 MtrunA17_Chr2g0333851 50.000 78 36 2 233 307 153 230 2.45e-17 82.0
MsaG029771 MtrunA17_Chr7g0248721 52.857 70 32 1 234 303 128 196 2.72e-17 80.1
MsaG029771 MtrunA17_Chr7g0248721 50.000 60 28 2 90 148 139 197 1.19e-11 63.9
MsaG029771 MtrunA17_Chr4g0053281 54.386 57 25 1 248 303 267 323 2.80e-16 79.3
MsaG029771 MtrunA17_Chr1g0147881 49.296 71 35 1 234 303 249 319 3.92e-16 79.0
MsaG029771 MtrunA17_Chr5g0401821 47.887 71 36 1 234 303 186 256 6.67e-16 77.0
MsaG029771 MtrunA17_Chr1g0184691 55.172 58 25 1 248 304 294 351 3.18e-15 76.3
MsaG029771 MtrunA17_Chr4g0071521 46.479 71 37 1 234 303 232 302 5.04e-15 75.5
MsaG029771 MtrunA17_Chr7g0270051 38.261 115 58 4 195 308 13 115 8.23e-15 73.9
MsaG029771 MtrunA17_Chr7g0270051 35.789 95 59 2 58 150 19 113 6.28e-11 62.4
MsaG029771 MtrunA17_Chr8g0379461 50.000 64 31 1 247 309 76 139 1.61e-14 72.8
MsaG029771 MtrunA17_Chr5g0432071 30.921 152 84 2 1 152 34 164 2.25e-14 71.6
MsaG029771 MtrunA17_Chr5g0432071 38.710 93 49 4 217 307 77 163 2.16e-12 65.9
MsaG029771 MtrunA17_Chr4g0024391 41.667 84 48 1 226 308 208 291 2.64e-14 74.3
MsaG029771 MtrunA17_Chr2g0289181 51.471 68 31 2 88 153 10 77 4.06e-14 71.2
MsaG029771 MtrunA17_Chr2g0289181 43.836 73 40 1 236 307 3 75 2.07e-13 69.3
MsaG029771 MtrunA17_Chr2g0319961 45.122 82 38 2 226 306 65 140 6.67e-14 71.2
MsaG029771 MtrunA17_Chr8g0387501 45.833 72 38 1 239 309 121 192 7.10e-14 71.2
MsaG029771 MtrunA17_Chr8g0387501 48.333 60 29 2 93 150 130 189 3.54e-11 63.2
MsaG029771 MtrunA17_Chr5g0419241 53.448 58 22 1 221 273 46 103 9.35e-14 67.0
MsaG029771 MtrunA17_Chr1g0202461 41.772 79 44 2 232 309 247 324 2.24e-13 70.9
MsaG029771 MtrunA17_Chr1g0202461 39.474 76 44 2 77 150 246 321 4.39e-11 63.9
MsaG029771 MtrunA17_Chr2g0284321 50.820 61 28 2 248 306 36 96 2.77e-13 68.6
MsaG029771 MtrunA17_Chr2g0284321 48.333 60 29 2 93 150 36 95 3.27e-11 62.4
MsaG029771 MtrunA17_Chr8g0348311 46.970 66 34 1 245 309 153 218 5.84e-13 69.3
MsaG029771 MtrunA17_Chr7g0228941 49.123 57 28 1 248 303 53 109 9.48e-13 64.7
MsaG029771 MtrunA17_Chr7g0248691 46.875 64 33 1 245 307 152 215 2.91e-12 67.0
MsaG029771 MtrunA17_Chr3g0139021 43.836 73 40 1 232 303 299 371 4.16e-12 67.0
MsaG029771 MtrunA17_Chr2g0293481 47.619 63 32 1 248 309 268 330 6.01e-12 67.0
MsaG029771 MtrunA17_Chr2g0293481 49.231 65 31 2 88 150 263 327 4.74e-11 64.3
MsaG029771 MtrunA17_Chr8g0347251 38.554 83 47 2 240 319 129 210 1.25e-11 65.5
MsaG029771 MtrunA17_Chr3g0126391 45.902 61 30 1 244 301 130 190 5.07e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG029771 AT2G04880.2 45.113 266 110 7 76 314 94 350 2.01e-66 218
MsaG029771 AT2G04880.1 44.128 281 115 7 76 314 94 374 2.65e-65 216
MsaG029771 AT2G38470.1 42.339 248 108 5 92 310 184 425 1.16e-51 180
MsaG029771 AT2G38470.1 53.226 62 28 1 90 150 360 421 1.36e-12 69.3
MsaG029771 AT4G26640.5 42.742 248 111 6 83 309 30 267 1.32e-50 174
MsaG029771 AT4G26640.6 42.742 248 111 6 83 309 30 267 1.32e-50 174
MsaG029771 AT4G26640.4 42.742 248 111 6 83 309 30 267 1.32e-50 174
MsaG029771 AT4G26640.3 42.742 248 111 6 83 309 30 267 1.32e-50 174
MsaG029771 AT2G30250.1 42.616 237 124 6 83 309 157 391 1.92e-50 174
MsaG029771 AT4G26640.1 42.742 248 111 6 83 309 134 371 8.44e-50 175
MsaG029771 AT4G26640.7 42.083 240 112 4 83 303 166 397 1.33e-49 175
MsaG029771 AT4G26640.2 42.742 248 111 6 83 309 206 443 2.17e-49 175
MsaG029771 AT4G26440.1 38.132 257 118 3 93 309 179 434 4.33e-48 172
MsaG029771 AT4G26440.1 50.820 61 29 1 246 306 177 236 6.05e-13 70.5
MsaG029771 AT5G07100.2 41.494 241 100 6 74 312 5 206 4.90e-48 162
MsaG029771 AT5G07100.4 41.494 241 100 6 74 312 5 206 4.90e-48 162
MsaG029771 AT5G07100.5 41.494 241 100 6 74 312 5 206 4.90e-48 162
MsaG029771 AT5G07100.3 41.494 241 100 6 74 312 5 206 4.90e-48 162
MsaG029771 AT5G07100.1 41.494 241 100 6 74 312 98 299 1.11e-47 164
MsaG029771 AT1G13960.2 40.249 241 119 5 88 303 72 312 1.15e-47 166
MsaG029771 AT4G30935.1 35.786 299 166 9 33 307 95 391 2.98e-46 165
MsaG029771 AT3G01080.1 40.741 216 112 3 88 303 163 362 1.44e-45 162
MsaG029771 AT3G01080.1 56.250 64 27 1 246 309 166 228 1.14e-14 75.5
MsaG029771 AT3G01080.1 50.000 62 30 1 90 150 304 365 3.12e-11 65.1
MsaG029771 AT3G01080.2 40.741 216 112 3 88 303 201 400 1.88e-45 162
MsaG029771 AT3G01080.2 56.250 64 27 1 246 309 204 266 1.42e-14 75.5
MsaG029771 AT3G01080.2 50.000 62 30 1 90 150 342 403 2.78e-11 65.5
MsaG029771 AT2G03340.1 36.905 252 109 6 88 309 246 477 3.07e-41 152
MsaG029771 AT2G03340.1 56.923 65 27 1 246 310 249 312 8.07e-17 82.4
MsaG029771 AT2G03340.1 50.794 63 30 1 93 154 416 478 1.74e-12 69.3
MsaG029771 AT2G37260.3 35.531 273 111 7 93 316 86 342 4.48e-41 148
MsaG029771 AT2G37260.2 35.531 273 111 7 93 316 84 340 4.56e-41 148
MsaG029771 AT2G37260.1 35.531 273 111 7 93 316 166 422 1.01e-40 149
MsaG029771 AT5G56270.1 56.000 100 44 0 210 309 450 549 1.90e-30 123
MsaG029771 AT5G56270.1 53.968 63 29 0 91 153 272 334 2.56e-15 78.2
MsaG029771 AT5G56270.1 55.932 59 25 1 248 306 274 331 5.67e-15 77.0
MsaG029771 AT5G56270.1 50.000 64 31 1 90 152 485 548 8.73e-12 67.4
MsaG029771 AT1G13960.1 61.111 72 28 0 232 303 394 465 1.87e-26 110
MsaG029771 AT4G12020.10 33.495 206 103 3 88 267 464 661 5.10e-26 110
MsaG029771 AT4G12020.10 50.820 61 29 1 246 306 467 526 1.33e-12 70.1
MsaG029771 AT4G12020.6 33.495 206 103 3 88 267 464 661 5.39e-26 110
MsaG029771 AT4G12020.6 50.820 61 29 1 246 306 467 526 1.29e-12 70.1
MsaG029771 AT4G12020.8 33.495 206 103 3 88 267 464 661 5.39e-26 110
MsaG029771 AT4G12020.8 50.820 61 29 1 246 306 467 526 1.29e-12 70.1
MsaG029771 AT4G12020.7 33.495 206 103 3 88 267 464 661 5.40e-26 110
MsaG029771 AT4G12020.7 50.820 61 29 1 246 306 467 526 1.37e-12 70.1
MsaG029771 AT4G12020.1 33.495 206 103 3 88 267 464 661 5.61e-26 110
MsaG029771 AT4G12020.1 50.820 61 29 1 246 306 467 526 1.36e-12 70.1
MsaG029771 AT4G12020.9 33.495 206 103 3 88 267 464 661 5.61e-26 110
MsaG029771 AT4G12020.9 50.820 61 29 1 246 306 467 526 1.36e-12 70.1
MsaG029771 AT4G12020.3 33.495 206 103 3 88 267 464 661 5.87e-26 110
MsaG029771 AT4G12020.3 50.820 61 29 1 246 306 467 526 1.41e-12 70.1
MsaG029771 AT4G12020.2 33.495 206 103 3 88 267 464 661 5.88e-26 110
MsaG029771 AT4G12020.2 50.820 61 29 1 246 306 467 526 1.54e-12 70.1
MsaG029771 AT4G12020.4 33.495 206 103 3 88 267 464 661 6.56e-26 110
MsaG029771 AT4G12020.4 50.820 61 29 1 246 306 467 526 1.51e-12 70.1
MsaG029771 AT4G12020.5 33.495 206 103 3 88 267 397 594 6.64e-26 110
MsaG029771 AT4G12020.5 50.820 61 29 1 246 306 400 459 1.52e-12 70.1
MsaG029771 AT4G12020.11 33.495 206 103 3 88 267 464 661 8.18e-26 110
MsaG029771 AT4G12020.11 50.820 61 29 1 246 306 467 526 1.69e-12 69.7
MsaG029771 AT5G26170.1 57.143 70 30 0 234 303 100 169 2.12e-23 96.3
MsaG029771 AT4G04450.2 48.387 93 46 2 225 315 176 268 4.66e-23 100
MsaG029771 AT4G04450.2 47.619 63 31 2 90 150 196 258 9.47e-12 66.6
MsaG029771 AT4G22070.4 49.425 87 42 2 222 306 272 358 1.11e-22 100
MsaG029771 AT4G22070.4 47.619 63 31 2 90 150 295 357 1.95e-11 65.9
MsaG029771 AT4G22070.3 49.425 87 42 2 222 306 272 358 1.11e-22 100
MsaG029771 AT4G22070.3 47.619 63 31 2 90 150 295 357 1.95e-11 65.9
MsaG029771 AT4G22070.2 49.425 87 42 2 222 306 272 358 1.11e-22 100
MsaG029771 AT4G22070.2 47.619 63 31 2 90 150 295 357 1.95e-11 65.9
MsaG029771 AT4G22070.1 49.425 87 42 2 222 306 272 358 1.11e-22 100
MsaG029771 AT4G22070.1 47.619 63 31 2 90 150 295 357 1.95e-11 65.9
MsaG029771 AT4G04450.1 48.387 93 46 2 225 315 270 362 1.16e-22 100
MsaG029771 AT4G04450.1 47.619 63 31 2 90 150 290 352 1.61e-11 66.2
MsaG029771 AT2G47260.1 57.333 75 32 0 232 306 159 233 1.50e-22 97.8
MsaG029771 AT2G47260.1 50.000 60 29 1 92 150 174 233 3.39e-11 64.3
MsaG029771 AT5G64810.1 57.143 70 30 0 234 303 97 166 1.60e-22 94.4
MsaG029771 AT1G68150.1 52.500 80 37 1 230 308 218 297 3.72e-22 97.1
MsaG029771 AT1G55600.1 50.575 87 42 1 222 307 282 368 3.75e-22 98.2
MsaG029771 AT1G55600.1 43.421 76 34 2 76 150 299 366 2.11e-11 65.9
MsaG029771 AT1G62300.1 47.059 102 49 3 210 306 272 373 7.59e-22 97.8
MsaG029771 AT1G62300.1 47.619 63 31 2 90 150 310 372 2.38e-11 65.9
MsaG029771 AT2G44745.1 52.703 74 35 0 232 305 130 203 1.54e-21 92.4
MsaG029771 AT2G44745.1 46.575 73 38 1 90 161 143 215 7.68e-14 70.5
MsaG029771 AT4G18170.1 58.750 80 32 1 232 310 157 236 1.92e-21 94.4
MsaG029771 AT4G18170.1 51.667 60 28 1 92 150 172 231 8.64e-12 66.2
MsaG029771 AT4G01720.1 55.844 77 32 2 232 306 224 300 2.42e-21 95.9
MsaG029771 AT4G01720.1 50.000 60 28 2 93 150 240 299 5.63e-11 64.3
MsaG029771 AT1G29860.1 56.250 80 34 1 232 310 121 200 2.69e-21 93.2
MsaG029771 AT1G29860.1 48.387 62 31 1 92 152 136 197 2.08e-11 64.7
MsaG029771 AT2G46130.1 55.714 70 31 0 234 303 17 86 5.32e-21 87.8
MsaG029771 AT2G46130.1 43.750 80 43 2 90 167 28 107 5.29e-14 68.2
MsaG029771 AT5G49520.1 55.000 80 35 1 232 310 206 285 8.86e-21 93.6
MsaG029771 AT5G49520.1 50.847 59 28 1 93 150 222 280 1.40e-11 65.9
MsaG029771 AT5G13080.1 42.105 95 55 0 209 303 29 123 1.28e-20 87.8
MsaG029771 AT5G13080.1 48.438 64 32 1 90 152 65 128 2.84e-13 67.4
MsaG029771 AT4G39410.1 54.054 74 34 0 232 305 208 281 2.34e-20 90.9
MsaG029771 AT5G46350.1 56.579 76 33 0 234 309 170 245 2.61e-20 91.3
MsaG029771 AT5G46350.1 50.000 60 29 1 92 150 183 242 2.62e-11 64.7
MsaG029771 AT5G41570.1 51.429 70 34 0 234 303 85 154 4.37e-20 87.4
MsaG029771 AT5G41570.1 40.449 89 47 2 90 177 96 179 3.31e-14 70.9
MsaG029771 AT1G64000.1 51.429 70 34 0 234 303 101 170 5.02e-20 87.4
MsaG029771 AT1G64000.1 51.613 62 29 1 88 148 110 171 3.62e-14 71.2
MsaG029771 AT5G15130.1 52.000 75 35 1 233 306 213 287 9.82e-20 91.3
MsaG029771 AT5G15130.2 52.000 75 35 1 233 306 171 245 1.06e-19 91.3
MsaG029771 AT3G62340.1 44.737 114 56 2 234 342 105 216 3.05e-19 87.4
MsaG029771 AT3G62340.1 52.542 59 27 1 93 150 119 177 4.09e-12 66.6
MsaG029771 AT1G69310.4 57.143 70 30 0 234 303 134 203 3.70e-19 87.4
MsaG029771 AT1G69310.4 52.632 57 26 1 92 147 147 203 1.93e-11 64.7
MsaG029771 AT1G69310.2 57.143 70 30 0 234 303 134 203 3.70e-19 87.4
MsaG029771 AT1G69310.2 52.632 57 26 1 92 147 147 203 1.93e-11 64.7
MsaG029771 AT1G69310.1 57.143 70 30 0 234 303 134 203 3.70e-19 87.4
MsaG029771 AT1G69310.1 52.632 57 26 1 92 147 147 203 1.93e-11 64.7
MsaG029771 AT3G01970.1 50.704 71 35 0 233 303 51 121 4.73e-19 83.6
MsaG029771 AT4G31800.2 49.275 69 34 1 239 306 103 171 1.96e-18 84.3
MsaG029771 AT4G31800.1 49.275 69 34 1 239 306 168 236 2.75e-18 85.1
MsaG029771 AT1G18860.1 50.000 76 37 1 232 306 224 299 3.01e-18 86.7
MsaG029771 AT2G25000.2 53.226 62 28 1 246 306 102 163 1.75e-17 81.3
MsaG029771 AT2G25000.4 53.226 62 28 1 246 306 102 163 1.75e-17 81.3
MsaG029771 AT5G43290.1 33.582 134 79 1 243 376 110 233 1.78e-17 82.0
MsaG029771 AT2G25000.3 52.308 65 30 1 243 306 121 185 3.54e-17 80.9
MsaG029771 AT2G25000.1 52.308 65 30 1 243 306 142 206 4.15e-17 81.3
MsaG029771 AT2G21900.1 48.485 66 34 0 242 307 104 169 4.66e-17 79.3
MsaG029771 AT2G21900.1 42.500 80 45 1 72 150 89 168 1.56e-13 69.3
MsaG029771 AT1G69810.2 50.649 77 36 2 232 306 130 206 7.34e-17 81.3
MsaG029771 AT2G23320.1 41.121 107 45 3 215 303 191 297 7.46e-17 81.3
MsaG029771 AT3G01080.3 51.562 64 31 0 88 151 201 264 7.67e-17 81.3
MsaG029771 AT3G01080.3 56.250 64 27 1 246 309 204 266 6.04e-15 75.5
MsaG029771 AT1G69810.1 50.649 77 36 2 232 306 188 264 9.36e-17 81.6
MsaG029771 AT5G28650.1 57.895 57 23 1 248 303 263 319 2.37e-16 79.7
MsaG029771 AT1G80840.1 43.590 78 41 2 233 307 130 207 2.67e-16 79.3
MsaG029771 AT2G46130.2 51.429 70 30 1 234 303 17 82 2.86e-16 74.3
MsaG029771 AT2G24570.1 56.140 57 24 1 248 303 244 300 6.35e-16 78.6
MsaG029771 AT3G04670.1 57.895 57 23 1 248 303 263 319 7.68e-16 78.2
MsaG029771 AT4G24240.1 47.222 72 37 1 234 304 268 339 9.88e-16 78.2
MsaG029771 AT4G31550.1 54.386 57 25 1 248 303 247 303 4.65e-15 75.9
MsaG029771 AT4G31550.2 54.386 57 25 1 248 303 246 302 4.92e-15 75.9
MsaG029771 AT5G52830.1 46.914 81 41 2 230 309 149 228 6.11e-15 75.9
MsaG029771 AT5G52830.1 45.588 68 35 2 85 150 158 225 2.75e-12 67.8
MsaG029771 AT1G69310.3 52.857 70 29 1 234 303 134 199 1.69e-14 73.6
MsaG029771 AT2G30590.1 54.386 57 25 1 248 303 314 370 1.73e-14 74.7
MsaG029771 AT4G23550.1 44.000 75 41 1 236 309 129 203 3.86e-14 73.2
MsaG029771 AT1G29280.1 50.820 61 29 1 247 306 74 134 4.80e-14 72.0
MsaG029771 AT1G29280.1 48.333 60 29 2 93 150 75 134 2.89e-11 63.9
MsaG029771 AT3G58710.2 40.566 106 56 2 203 307 32 131 3.32e-13 69.7
MsaG029771 AT5G01900.1 38.889 90 51 2 90 175 108 197 3.93e-13 69.3
MsaG029771 AT3G58710.1 44.578 83 39 2 226 307 56 132 1.19e-12 68.2
MsaG029771 AT5G45260.1 48.387 62 28 2 93 150 1209 1270 4.40e-12 68.6
MsaG029771 AT4G01250.1 46.875 64 33 1 247 309 128 191 5.93e-12 66.2
MsaG029771 AT2G34830.2 47.619 63 32 1 248 309 225 287 6.41e-12 67.0
MsaG029771 AT2G34830.2 49.231 65 31 2 88 150 220 284 4.22e-11 64.7
MsaG029771 AT2G34830.1 47.619 63 32 1 248 309 216 278 6.54e-12 67.0
MsaG029771 AT2G34830.1 49.231 65 31 2 88 150 211 275 3.48e-11 64.7
MsaG029771 AT1G30650.1 47.619 63 32 1 248 309 218 280 1.06e-11 66.6
MsaG029771 AT1G30650.1 50.769 65 30 2 88 150 213 277 1.34e-11 66.2
MsaG029771 AT2G46400.1 42.254 71 38 1 234 301 91 161 4.93e-11 63.5

Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTACGGTGTTTGATTC+AGG 0.253166 5:+81123230 None:intergenic
TTAAGGGGAGTGAATTTAAA+AGG 0.256917 5:-81123364 MsaT029771.1:CDS
CACTTGCTGCTGTACTTTAT+CGG 0.275757 5:+81123637 None:intergenic
TACGGTCAGAAAATGGTTAA+AGG 0.320262 5:-81122742 MsaT029771.1:CDS
ACGGTGTTTGATTCAGGTTT+GGG 0.332610 5:+81123236 None:intergenic
TACGGTGTTTGATTCAGGTT+TGG 0.335607 5:+81123235 None:intergenic
AAAACATTGCAATTCAGCTT+TGG 0.349332 5:+81122209 None:intergenic
GGCTATAAATGGCGAAAGTA+TGG 0.352648 5:-81123398 MsaT029771.1:CDS
AAACATTGCAATTCAGCTTT+GGG 0.362250 5:+81122210 None:intergenic
TCACAAAAGATGGCTATAAA+TGG 0.370905 5:-81123409 MsaT029771.1:CDS
GCGCAAATACGGTCAGAAAA+TGG 0.379435 5:-81122749 MsaT029771.1:CDS
ATCGCTGATAGAATCTTCTT+TGG 0.384153 5:+81122318 None:intergenic
CAATTCATGCGAAGGAGTCT+TGG 0.392943 5:+81123481 None:intergenic
AATTCATGCGAAGGAGTCTT+GGG 0.399844 5:+81123482 None:intergenic
ATAGAATCTTCTTTGGTACT+AGG 0.419154 5:+81122325 None:intergenic
GGAAGGATGGTCGCTCGAAT+TGG 0.420254 5:+81122400 None:intergenic
AACTGTCATAACTACCTATG+AGG 0.422219 5:-81122488 MsaT029771.1:CDS
ACCTTCCACATCAGCAAAAG+AGG 0.424951 5:+81123163 None:intergenic
GGGGCTCTGTGAATGTTGCT+CGG 0.428148 5:+81123502 None:intergenic
GTTCTTCCTGTTGTCGAAAA+GGG 0.433436 5:-81123197 MsaT029771.1:CDS
TGTTCTTCCTGTTGTCGAAA+AGG 0.433937 5:-81123198 MsaT029771.1:CDS
CAAACTTGAATCACGTATCA+TGG 0.436403 5:+81122294 None:intergenic
TACTATCGATGCTCGAGTCC+CGG 0.444280 5:-81122556 MsaT029771.1:CDS
CGTGAAAAGGTCACAAAAGA+TGG 0.457293 5:-81123419 MsaT029771.1:CDS
ACCCTCCATAATACGTGAAA+AGG 0.461224 5:-81123432 MsaT029771.1:CDS
GTTCGAACTACAAGTGAGTC+TGG 0.468907 5:-81122796 MsaT029771.1:CDS
GAATTGCCTCTGATGCAATC+TGG 0.477337 5:-81123464 MsaT029771.1:CDS
GGGTATCGCTGGCGCAAATA+CGG 0.478104 5:-81122760 MsaT029771.1:CDS
GGGCTCTGTGAATGTTGCTC+GGG 0.482480 5:+81123503 None:intergenic
TGATGCTATGGCTTGTGACT+TGG 0.484944 5:-81123546 MsaT029771.1:CDS
CTCTGTGAATGTTGCTCGGG+CGG 0.495254 5:+81123506 None:intergenic
ATGATCATGTTGACCCTCAT+AGG 0.497230 5:+81122474 None:intergenic
AAGACCCTGGTTAGGAAGGA+TGG 0.500400 5:+81122387 None:intergenic
CATGTACCTCCCGCTGGAAG+AGG 0.501900 5:-81122454 MsaT029771.1:CDS
TCTTGACCAGATTGCATCAG+AGG 0.508109 5:+81123458 None:intergenic
AATAGTAACAACGATGCGAC+TGG 0.513117 5:-81122853 MsaT029771.1:CDS
ACAGGAAGAACACAATCAAC+CGG 0.519640 5:+81123209 None:intergenic
GTATGAAGCTGTGCCTCGAC+AGG 0.524519 5:-81123036 MsaT029771.1:CDS
TTTGCTGATGTGGAAGGTCA+AGG 0.525864 5:-81123158 MsaT029771.1:intron
AGCGACCATCCTTCCTAACC+AGG 0.527054 5:-81122392 MsaT029771.1:CDS
AACACAATCAACCGGTGGTA+CGG 0.528993 5:+81123217 None:intergenic
CCACATCAGCAAAAGAGGAT+TGG 0.536681 5:+81123168 None:intergenic
CGCGAACTGACGAGTCAAAG+AGG 0.542274 5:-81122977 MsaT029771.1:CDS
TTGTAAATGATGGGTATCGC+TGG 0.545679 5:-81122771 MsaT029771.1:CDS
ATTGCAATTCAGCTTTGGGC+GGG 0.555048 5:+81122214 None:intergenic
CGCAAAGGTGTGACCTGTCG+AGG 0.560873 5:+81123023 None:intergenic
AGGGAGATTGCATTGTCACA+AGG 0.566691 5:-81123605 MsaT029771.1:CDS
TCTGCAACAGATGTTGTACT+AGG 0.567336 5:+81122238 None:intergenic
GAGTCTGGAATTGTAAATGA+TGG 0.567590 5:-81122781 MsaT029771.1:CDS
TCAGGGACACCTCTTCCAGC+GGG 0.571731 5:+81122445 None:intergenic
TGAATCAAACACCGTACCAC+CGG 0.573093 5:-81123228 MsaT029771.1:CDS
CATGATCATGTACCTCCCGC+TGG 0.575201 5:-81122460 MsaT029771.1:CDS
TCATGTTCACTTAATCTGCA+TGG 0.576789 5:+81122265 None:intergenic
CATTGCAATTCAGCTTTGGG+CGG 0.578039 5:+81122213 None:intergenic
TCTTAAAAGTGAAATAAATG+AGG 0.591759 5:-81122368 MsaT029771.1:CDS
CGGTGTTTGATTCAGGTTTG+GGG 0.596338 5:+81123237 None:intergenic
ATCAGAGGCAATTCATGCGA+AGG 0.602766 5:+81123473 None:intergenic
ACTGGAGCTGATGTGTCAAA+TGG 0.603473 5:-81122835 MsaT029771.1:CDS
ACTGTCATAACTACCTATGA+GGG 0.609013 5:-81122487 MsaT029771.1:CDS
AGTGTCGGATTCTGATGCTA+TGG 0.614930 5:-81123558 MsaT029771.1:CDS
GGGAGATTGCATTGTCACAA+GGG 0.616469 5:-81123604 MsaT029771.1:CDS
TTCAGGGACACCTCTTCCAG+CGG 0.624834 5:+81122444 None:intergenic
TACGAAGATTGCAGTTACAT+CGG 0.625017 5:-81123272 MsaT029771.1:CDS
GAAGGTGGATGGAAACGCAA+AGG 0.633047 5:+81123008 None:intergenic
AGTCTGGAATTGTAAATGAT+GGG 0.636147 5:-81122780 MsaT029771.1:CDS
GCAGCAAGTGAGTCCACAGA+GGG 0.639573 5:-81123624 MsaT029771.1:CDS
GACAATGCAATCTCCCTCTG+TGG 0.657768 5:+81123611 None:intergenic
TTAAAGGCAACACAAATCCA+AGG 0.658587 5:-81122726 MsaT029771.1:intron
GGGACACCTCTTCCAGCGGG+AGG 0.678592 5:+81122448 None:intergenic
AGCAGCAAGTGAGTCCACAG+AGG 0.681184 5:-81123625 MsaT029771.1:CDS
ATTCATGCGAAGGAGTCTTG+GGG 0.682503 5:+81123483 None:intergenic
GCGACCATCCTTCCTAACCA+GGG 0.690672 5:-81122391 MsaT029771.1:CDS
TCAGCAAAAGAGGATTGGTG+TGG 0.698509 5:+81123173 None:intergenic
CAAATTCAGATATCACACGA+TGG 0.706763 5:-81123299 MsaT029771.1:CDS
GGAAGAACACAATCAACCGG+TGG 0.713267 5:+81123212 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 81122222 81123699 81122222 ID=MsaG029771
Chr5 mRNA 81122222 81123699 81122222 ID=MsaT029771.1;Parent=MsaG029771
Chr5 exon 81122222 81122582 81122222 ID=MsaT029771.1.exon4;Parent=MsaT029771.1
Chr5 CDS 81122222 81122582 81122222 ID=cds.MsaT029771.1;Parent=MsaT029771.1
Chr5 exon 81122727 81122885 81122727 ID=MsaT029771.1.exon3;Parent=MsaT029771.1
Chr5 CDS 81122727 81122885 81122727 ID=cds.MsaT029771.1;Parent=MsaT029771.1
Chr5 exon 81122975 81123074 81122975 ID=MsaT029771.1.exon2;Parent=MsaT029771.1
Chr5 CDS 81122975 81123074 81122975 ID=cds.MsaT029771.1;Parent=MsaT029771.1
Chr5 exon 81123159 81123699 81123159 ID=MsaT029771.1.exon1;Parent=MsaT029771.1
Chr5 CDS 81123159 81123699 81123159 ID=cds.MsaT029771.1;Parent=MsaT029771.1
Gene Sequence

>MsaT029771.1

ATGGTTTTGTCACAAGAAAGTGCTGATCACAACGTTTCTTCCGATAAAGTACAGCAGCAAGTGAGTCCACAGAGGGAGATTGCATTGTCACAAGGGATTGATGATGTAGCTAAAAATGAAGTGTCGGATTCTGATGCTATGGCTTGTGACTTGGTATCGTCACACTCTTCACCGCCCGAGCAACATTCACAGAGCCCCAAGACTCCTTCGCATGAATTGCCTCTGATGCAATCTGGTCAAGACAAACCCTCCATAATACGTGAAAAGGTCACAAAAGATGGCTATAAATGGCGAAAGTATGGCCAGAAAAACGTTAAGGGGAGTGAATTTAAAAGGAGTTATTACAAATGTACTTATTCAGACTGCCCTGCAAGAAAACAAATTCAGATATCACACGATGGAAACTACGAAGATTGCAGTTACATCGGTCAGCATAATCACCCCAAACCTGAATCAAACACCGTACCACCGGTTGATTGTGTTCTTCCTGTTGTCGAAAAGGGACCACACCAATCCTCTTTTGCTGATGTGGAAGGTCAAGAAAATTCATCTGTTGAGTATGAAGCTGTGCCTCGACAGGTCACACCTTTGCGTTTCCATCCACCTTCAAAAATTTCGCGAACTGACGAGTCAAAGAGGCTGAAGAAAGACAATAGTAACAACGATGCGACTGGAGCTGATGTGTCAAATGGTGAATCTCGCGTTATTGTTCGAACTACAAGTGAGTCTGGAATTGTAAATGATGGGTATCGCTGGCGCAAATACGGTCAGAAAATGGTTAAAGGCAACACAAATCCAAGAAATTACTATCGATGCTCGAGTCCCGGATGCCCCGTCAAAAAGCATGTTGAGAAGTCCTCTCAAAACACAACAACTGTCATAACTACCTATGAGGGTCAACATGATCATGTACCTCCCGCTGGAAGAGGTGTCCCTGAAAATACACCTACAAAATTGACTCCAATTCGAGCGACCATCCTTCCTAACCAGGGTCTTAAAAGTGAAATAAATGAGGAAGAGCAACAAAATGAAGATCCTAGTACCAAAGAAGATTCTATCAGCGATGCCATGATACGTGATTCAAGTTTGAAAGTTCCATGCAGATTAAGTGAACATGATACTCCTAGTACAACATCTGTTGCAGAACCCGCCCAAAGCTGA
Protein sequence

>MsaT029771.1

MVLSQESADHNVSSDKVQQQVSPQREIALSQGIDDVAKNEVSDSDAMACDLVSSHSSPPEQHSQSPKTPSHELPLMQSGQDKPSIIREKVTKDGYKWRKYGQKNVKGSEFKRSYYKCTYSDCPARKQIQISHDGNYEDCSYIGQHNHPKPESNTVPPVDCVLPVVEKGPHQSSFADVEGQENSSVEYEAVPRQVTPLRFHPPSKISRTDESKRLKKDNSNNDATGADVSNGESRVIVRTTSESGIVNDGYRWRKYGQKMVKGNTNPRNYYRCSSPGCPVKKHVEKSSQNTTTVITTYEGQHDHVPPAGRGVPENTPTKLTPIRATILPNQGLKSEINEEEQQNEDPSTKEDSISDAMIRDSSLKVPCRLSEHDTPSTTSVAEPAQS*