AlfalfaGEDB | MsaG029772

M. sativa ssp. caerulea / MsaG029772

KEGG: K18834
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043565 GO:0045893 GO:0045935 GO:0046677 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029772	sp\|Q6VWJ6\|WRK46_HORVU	31.984	247	118	4	84	286	190	430	2.28e-35	137

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029772	tr\|G7KEQ2\|G7KEQ2_MEDTR	88.103	311	26	1	1	300	1	311	0.0	566

TFs/TRs:

Gene ID	Type	Classification
MsaG029772	TF	WRKY

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000689	MsaG029772	0.800036	2.907260e-48	3.933965e-46
MsaG004441	MsaG029772	0.806189	1.572319e-49	2.451036e-47
MsaG006170	MsaG029772	0.806178	1.581043e-49	2.463968e-47
MsaG006625	MsaG029772	0.812500	7.065718e-51	1.282943e-48
MsaG007738	MsaG029772	0.810312	2.098651e-50	3.611326e-48
MsaG010252	MsaG029772	0.876866	2.069873e-68	3.235276e-65
MsaG012671	MsaG029772	0.801435	1.511467e-48	2.110905e-46
MsaG013266	MsaG029772	0.802537	8.992887e-49	1.287936e-46
MsaG016946	MsaG029772	0.817513	5.521105e-52	1.138010e-49
MsaG017972	MsaG029772	0.810112	2.316603e-50	3.966920e-48
MsaG027863	MsaG029772	0.814764	2.256121e-51	4.335366e-49
MsaG028388	MsaG029772	0.812330	7.693027e-51	1.390918e-48
MsaG029772	MsaG045506	0.827799	2.289542e-54	6.225860e-52
MsaG029772	MsaG045952	0.823274	2.671289e-53	6.411585e-51
MsaG029772	MsaG046614	0.834783	4.469375e-56	1.487395e-53
MsaG029772	MsaG029566	0.805781	1.914734e-49	2.956071e-47
MsaG029772	MsaG030836	0.807693	7.586626e-50	1.225534e-47
MsaG029772	MsaG035293	0.819668	1.801067e-52	3.926262e-50
MsaG029772	MsaG036754	0.803565	5.524150e-49	8.100936e-47
MsaG029772	MsaG039898	0.870319	3.248334e-66	3.815009e-63
MsaG029772	MsaG042416	0.810370	2.039240e-50	3.514091e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029772	MtrunA17_Chr5g0447711	88.103	311	26	1	1	300	1	311	0.0	566
MsaG029772	MtrunA17_Chr5g0447701	52.134	328	124	5	1	295	1	328	5.90e-108	319
MsaG029772	MtrunA17_Chr4g0009881	74.286	105	26	1	67	171	1	104	1.34e-54	173
MsaG029772	MtrunA17_Chr4g0004911	34.483	232	120	4	77	283	176	400	7.66e-38	140
MsaG029772	MtrunA17_Chr7g0243891	33.333	246	136	6	76	293	208	453	2.94e-37	139
MsaG029772	MtrunA17_Chr5g0445311	29.073	313	168	5	20	295	145	440	2.38e-36	136
MsaG029772	MtrunA17_Chr3g0101131	32.000	250	134	2	75	288	235	484	5.20e-35	133
MsaG029772	MtrunA17_Chr5g0432161	31.535	241	122	3	84	282	245	484	4.86e-34	130
MsaG029772	MtrunA17_Chr3g0106491	32.609	230	124	4	84	282	199	428	2.68e-33	127
MsaG029772	MtrunA17_Chr5g0418191	31.120	241	131	3	84	290	152	391	3.10e-33	126
MsaG029772	MtrunA17_Chr5g0418191	35.417	96	61	1	203	298	135	229	2.71e-11	63.9
MsaG029772	MtrunA17_Chr4g0042831	30.738	244	164	3	57	299	119	358	2.18e-32	123
MsaG029772	MtrunA17_Chr4g0074001	30.290	241	113	7	84	278	187	418	2.74e-23	99.4
MsaG029772	MtrunA17_Chr7g0249311	44.444	90	50	0	204	293	377	466	1.63e-20	91.7
MsaG029772	MtrunA17_Chr7g0249311	45.205	73	37	1	83	152	179	251	1.86e-14	73.6
MsaG029772	MtrunA17_Chr3g0079691	45.882	85	46	0	204	288	480	564	2.03e-20	91.7
MsaG029772	MtrunA17_Chr3g0079691	47.458	59	31	0	83	141	280	338	1.43e-13	70.9
MsaG029772	MtrunA17_Chr7g0249301	48.052	77	40	0	205	281	278	354	5.68e-20	89.0
MsaG029772	MtrunA17_Chr7g0249301	42.466	73	39	1	83	152	62	134	1.99e-13	70.1
MsaG029772	MtrunA17_Chr7g0218081	42.045	88	51	0	203	290	394	481	6.89e-20	89.7
MsaG029772	MtrunA17_Chr7g0218081	47.458	59	31	0	84	142	229	287	2.04e-13	70.5
MsaG029772	MtrunA17_Chr7g0218081	46.774	62	30	2	218	278	227	286	3.56e-11	63.5
MsaG029772	MtrunA17_Chr7g0263531	48.000	75	39	0	204	278	346	420	5.02e-18	84.0
MsaG029772	MtrunA17_Chr7g0263531	45.763	59	32	0	84	142	190	248	1.62e-12	67.4
MsaG029772	MtrunA17_Chr7g0263531	45.588	68	36	1	211	278	181	247	7.05e-12	65.5
MsaG029772	MtrunA17_Chr1g0150801	47.826	69	36	0	207	275	90	158	8.93e-16	73.6
MsaG029772	MtrunA17_Chr1g0188941	35.897	78	50	0	202	279	34	111	2.86e-15	70.9
MsaG029772	MtrunA17_Chr8g0335811	44.595	74	41	0	204	277	139	212	3.63e-15	73.2
MsaG029772	MtrunA17_Chr4g0051881	48.000	75	39	0	205	279	164	238	4.66e-15	74.7
MsaG029772	MtrunA17_Chr4g0051881	32.000	125	78	3	73	192	170	292	8.22e-11	62.0
MsaG029772	MtrunA17_Chr1g0194481	46.053	76	41	0	204	279	143	218	4.97e-15	74.3
MsaG029772	MtrunA17_Chr2g0294231	44.737	76	42	0	204	279	188	263	5.64e-15	74.7
MsaG029772	MtrunA17_Chr2g0294231	41.935	62	35	1	84	144	204	265	8.06e-11	62.4
MsaG029772	MtrunA17_Chr8g0383251	43.056	72	41	0	207	278	96	167	1.06e-14	71.2
MsaG029772	MtrunA17_Chr5g0418781	42.553	94	49	2	204	293	109	201	1.15e-14	72.8
MsaG029772	MtrunA17_Chr8g0386241	42.647	68	39	0	208	275	92	159	2.29e-14	70.1
MsaG029772	MtrunA17_Chr3g0129321	41.892	74	43	0	205	278	104	177	6.18e-14	69.3
MsaG029772	MtrunA17_Chr3g0129361	43.243	74	42	0	204	277	129	202	8.44e-14	69.3
MsaG029772	MtrunA17_Chr5g0443131	45.570	79	42	1	205	282	143	221	8.61e-14	70.5
MsaG029772	MtrunA17_Chr7g0224801	44.118	68	38	0	208	275	82	149	1.86e-13	67.4
MsaG029772	MtrunA17_Chr7g0270191	44.000	75	42	0	204	278	130	204	2.03e-13	69.3
MsaG029772	MtrunA17_Chr7g0248721	39.506	81	48	1	195	275	117	196	9.38e-13	66.2
MsaG029772	MtrunA17_Chr8g0383351	42.667	75	42	1	204	277	144	218	1.51e-12	65.9
MsaG029772	MtrunA17_Chr4g0001361	36.170	94	51	3	203	287	146	239	3.27e-12	65.9
MsaG029772	MtrunA17_Chr2g0333851	36.471	85	53	1	196	279	146	230	3.34e-12	65.9
MsaG029772	MtrunA17_Chr5g0432071	44.000	75	42	0	71	145	92	166	3.62e-12	64.7
MsaG029772	MtrunA17_Chr5g0432071	40.000	70	41	1	219	288	104	172	1.28e-11	62.8
MsaG029772	MtrunA17_Chr3g0136961	43.056	72	38	2	207	275	124	195	4.86e-12	65.5
MsaG029772	MtrunA17_Chr1g0202461	37.234	94	53	2	213	300	255	348	7.60e-12	65.5
MsaG029772	MtrunA17_Chr7g0270831	34.940	83	52	2	209	289	206	288	9.81e-12	65.1
MsaG029772	MtrunA17_Chr1g0150281	46.479	71	36	2	207	275	127	197	1.27e-11	63.9
MsaG029772	MtrunA17_Chr3g0099641	30.909	110	73	3	191	298	223	331	1.44e-11	64.7
MsaG029772	MtrunA17_Chr4g0025061	30.928	97	66	1	185	280	326	422	1.48e-11	64.7
MsaG029772	MtrunA17_Chr4g0068541	40.278	72	43	0	207	278	196	267	2.08e-11	63.9
MsaG029772	MtrunA17_Chr4g0051181	41.538	65	37	1	217	280	241	305	6.08e-11	62.8
MsaG029772	MtrunA17_Chr2g0288871	31.915	94	63	1	186	278	272	365	7.28e-11	62.8
MsaG029772	MtrunA17_Chr6g0485431	37.500	80	49	1	200	278	135	214	8.49e-11	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029772	AT2G04880.2	32.526	289	159	2	47	299	75	363	4.20e-44	156
MsaG029772	AT2G30250.1	34.234	222	120	3	84	279	167	388	6.15e-36	133
MsaG029772	AT3G01080.1	33.824	204	120	3	84	278	168	365	3.62e-34	129
MsaG029772	AT3G01080.2	33.824	204	120	3	84	278	206	403	4.87e-34	129
MsaG029772	AT5G07100.2	34.826	201	106	4	84	281	25	203	4.17e-33	121
MsaG029772	AT5G07100.2	45.455	66	36	0	213	278	18	83	3.49e-13	67.8
MsaG029772	AT5G07100.4	34.826	201	106	4	84	281	25	203	4.17e-33	121
MsaG029772	AT5G07100.4	45.455	66	36	0	213	278	18	83	3.49e-13	67.8
MsaG029772	AT5G07100.5	34.826	201	106	4	84	281	25	203	4.17e-33	121
MsaG029772	AT5G07100.5	45.455	66	36	0	213	278	18	83	3.49e-13	67.8
MsaG029772	AT5G07100.3	34.826	201	106	4	84	281	25	203	4.17e-33	121
MsaG029772	AT5G07100.3	45.455	66	36	0	213	278	18	83	3.49e-13	67.8
MsaG029772	AT5G07100.1	34.826	201	106	4	84	281	118	296	2.60e-32	122
MsaG029772	AT5G07100.1	45.455	66	36	0	213	278	111	176	7.82e-13	68.2
MsaG029772	AT4G30935.1	31.140	228	120	6	83	278	168	390	1.85e-25	105
MsaG029772	AT2G04880.1	25.633	316	169	7	47	299	75	387	2.72e-24	102
MsaG029772	AT2G37260.2	26.531	245	122	5	84	275	84	323	9.99e-22	94.0
MsaG029772	AT2G37260.3	26.531	245	122	4	84	275	86	325	1.03e-21	94.0
MsaG029772	AT2G37260.1	26.531	245	122	5	84	275	166	405	1.55e-21	94.4
MsaG029772	AT5G56270.1	48.718	78	40	0	204	281	472	549	8.28e-21	93.2
MsaG029772	AT2G03340.1	42.222	90	52	0	203	292	399	488	8.74e-20	89.7
MsaG029772	AT2G03340.1	42.857	84	47	1	210	293	241	323	5.98e-15	75.5
MsaG029772	AT2G03340.1	49.153	59	30	0	84	142	251	309	1.54e-12	68.2
MsaG029772	AT1G13960.2	46.053	76	41	0	203	278	240	315	1.42e-19	88.2
MsaG029772	AT1G13960.2	44.706	85	44	2	206	288	63	146	2.53e-15	75.9
MsaG029772	AT1G13960.2	47.541	61	32	0	84	144	77	137	1.90e-12	67.4
MsaG029772	AT1G13960.1	46.053	76	41	0	203	278	393	468	2.09e-19	88.6
MsaG029772	AT1G13960.1	44.706	85	44	2	206	288	216	299	2.55e-15	76.6
MsaG029772	AT1G13960.1	47.541	61	32	0	84	144	230	290	1.15e-12	68.6
MsaG029772	AT2G38470.1	46.835	79	42	0	204	282	347	425	3.85e-19	87.8
MsaG029772	AT2G38470.1	45.000	60	33	0	83	142	184	243	7.95e-12	65.9
MsaG029772	AT4G26440.1	37.838	111	66	1	185	295	341	448	5.17e-19	87.4
MsaG029772	AT4G26440.1	46.552	58	31	0	84	141	179	236	1.10e-11	65.5
MsaG029772	AT4G26640.5	47.436	78	41	0	204	281	190	267	2.76e-18	84.7
MsaG029772	AT4G26640.5	39.759	83	49	1	61	142	12	94	3.17e-14	72.8
MsaG029772	AT4G26640.5	38.824	85	48	3	217	300	33	114	3.77e-11	63.5
MsaG029772	AT4G26640.6	47.436	78	41	0	204	281	190	267	2.76e-18	84.7
MsaG029772	AT4G26640.6	39.759	83	49	1	61	142	12	94	3.17e-14	72.8
MsaG029772	AT4G26640.6	38.824	85	48	3	217	300	33	114	3.77e-11	63.5
MsaG029772	AT4G26640.4	47.436	78	41	0	204	281	190	267	2.76e-18	84.7
MsaG029772	AT4G26640.4	39.759	83	49	1	61	142	12	94	3.17e-14	72.8
MsaG029772	AT4G26640.4	38.824	85	48	3	217	300	33	114	3.77e-11	63.5
MsaG029772	AT4G26640.3	47.436	78	41	0	204	281	190	267	2.76e-18	84.7
MsaG029772	AT4G26640.3	39.759	83	49	1	61	142	12	94	3.17e-14	72.8
MsaG029772	AT4G26640.3	38.824	85	48	3	217	300	33	114	3.77e-11	63.5
MsaG029772	AT4G26640.2	47.436	78	41	0	204	281	366	443	3.81e-18	85.1
MsaG029772	AT4G26640.2	34.545	110	68	1	37	142	161	270	1.66e-14	73.9
MsaG029772	AT4G26640.2	38.824	85	48	3	217	300	209	290	3.32e-11	64.3
MsaG029772	AT4G26640.7	47.436	78	41	0	204	281	326	403	3.86e-18	84.7
MsaG029772	AT4G26640.7	34.545	110	68	1	37	142	121	230	1.46e-14	74.3
MsaG029772	AT4G26640.7	38.824	85	48	3	217	300	169	250	3.62e-11	63.9
MsaG029772	AT4G26640.1	47.436	78	41	0	204	281	294	371	4.07e-18	84.7
MsaG029772	AT4G26640.1	34.545	110	68	1	37	142	89	198	1.81e-14	73.9
MsaG029772	AT4G26640.1	38.824	85	48	3	217	300	137	218	3.54e-11	63.9
MsaG029772	AT4G12020.5	24.590	244	112	5	55	239	364	594	1.50e-15	77.8
MsaG029772	AT4G12020.5	41.096	73	42	1	206	278	388	459	3.11e-12	67.8
MsaG029772	AT4G12020.10	24.590	244	112	5	55	239	431	661	1.91e-15	77.4
MsaG029772	AT4G12020.10	41.096	73	42	1	206	278	455	526	3.55e-12	67.4
MsaG029772	AT4G12020.3	24.590	244	112	5	55	239	431	661	1.91e-15	77.4
MsaG029772	AT4G12020.3	41.096	73	42	1	206	278	455	526	3.55e-12	67.4
MsaG029772	AT5G13080.1	45.588	68	37	0	208	275	56	123	4.59e-15	71.6
MsaG029772	AT2G44745.1	44.595	74	41	0	204	277	130	203	9.86e-15	72.4
MsaG029772	AT2G44745.1	43.662	71	39	1	81	150	143	213	3.69e-11	62.0
MsaG029772	AT5G64810.1	42.254	71	41	0	207	277	98	168	1.20e-14	71.6
MsaG029772	AT5G26170.1	44.928	69	38	0	207	275	101	169	1.94e-14	70.5
MsaG029772	AT4G18170.1	47.368	76	40	0	204	279	157	232	3.43e-14	72.4
MsaG029772	AT4G12020.11	24.686	239	108	5	55	234	431	656	3.81e-14	73.6
MsaG029772	AT4G12020.11	41.096	73	42	1	206	278	455	526	5.97e-11	63.5
MsaG029772	AT1G55600.1	45.833	72	39	0	207	278	295	366	4.20e-14	72.8
MsaG029772	AT1G69310.4	45.205	73	40	0	204	276	132	204	4.99e-14	71.2
MsaG029772	AT1G69310.2	45.205	73	40	0	204	276	132	204	4.99e-14	71.2
MsaG029772	AT1G69310.1	45.205	73	40	0	204	276	132	204	4.99e-14	71.2
MsaG029772	AT5G49520.1	46.250	80	42	1	204	282	206	285	9.87e-14	71.2
MsaG029772	AT5G41570.1	43.662	71	40	0	205	275	84	154	1.43e-13	68.2
MsaG029772	AT3G01080.3	49.153	59	30	0	84	142	206	264	1.50e-13	70.5
MsaG029772	AT2G47260.1	44.000	75	42	0	204	278	159	233	1.69e-13	70.5
MsaG029772	AT4G39410.1	44.595	74	41	0	204	277	208	281	1.77e-13	70.1
MsaG029772	AT2G21900.1	39.474	76	44	1	206	279	94	169	1.90e-13	68.6
MsaG029772	AT5G46350.1	42.353	85	49	0	205	289	169	253	3.98e-13	69.3
MsaG029772	AT2G46130.1	40.845	71	42	0	205	275	16	86	6.72e-13	64.3
MsaG029772	AT1G64000.1	43.478	69	39	0	207	275	102	170	1.44e-12	65.9
MsaG029772	AT1G64000.1	45.000	60	32	1	81	139	112	171	4.29e-11	61.6
MsaG029772	AT3G62340.1	49.180	61	31	0	218	278	117	177	1.67e-12	67.0
MsaG029772	AT1G29860.1	43.210	81	45	1	204	283	121	201	2.51e-12	66.2
MsaG029772	AT4G23550.1	41.333	75	43	1	208	281	129	203	2.67e-12	66.6
MsaG029772	AT3G01970.1	42.647	68	39	0	208	275	54	121	2.90e-12	63.9
MsaG029772	AT2G25000.2	36.364	88	52	2	203	286	87	174	6.71e-12	64.3
MsaG029772	AT2G25000.4	36.364	88	52	2	203	286	87	174	6.71e-12	64.3
MsaG029772	AT2G25000.3	37.662	77	47	1	203	278	109	185	9.01e-12	64.3
MsaG029772	AT4G01720.1	43.662	71	39	1	209	278	229	299	9.45e-12	65.9
MsaG029772	AT2G25000.1	36.364	88	52	2	203	286	130	217	1.09e-11	64.3
MsaG029772	AT4G31800.2	32.979	94	59	2	209	298	101	194	2.40e-11	63.2
MsaG029772	AT4G31800.1	32.979	94	59	2	209	298	166	259	2.96e-11	63.5
MsaG029772	AT1G68150.1	32.222	90	60	1	209	297	225	314	3.37e-11	63.9
MsaG029772	AT4G12020.6	41.096	73	42	1	206	278	455	526	4.65e-11	64.3
MsaG029772	AT4G12020.8	41.096	73	42	1	206	278	455	526	4.65e-11	64.3
MsaG029772	AT4G12020.4	41.096	73	42	1	206	278	455	526	4.90e-11	63.9
MsaG029772	AT4G12020.2	41.096	73	42	1	206	278	455	526	5.04e-11	63.9
MsaG029772	AT4G12020.7	41.096	73	42	1	206	278	455	526	5.05e-11	63.9
MsaG029772	AT4G12020.1	41.096	73	42	1	206	278	455	526	5.05e-11	63.9
MsaG029772	AT4G12020.9	41.096	73	42	1	206	278	455	526	5.05e-11	63.9
MsaG029772	AT1G80840.1	40.845	71	41	1	210	279	137	207	6.00e-11	62.4

Find 60 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GACAATGTGACCTCCCTTTC+AGG	0.167329	5:+81140507	None:intergenic
AATTCATGTGAAGGAGTATT+AGG	0.217767	5:+81140405	None:intergenic
AACTTCCACACCGGCCAAAT+AGG	0.232568	5:+81140086	None:intergenic
ACTCAAATAATGCGTATTAA+TGG	0.253581	5:-81139520	MsaT029772.1:CDS
TAATGTAACAACTACCTATA+AGG	0.261776	5:-81139602	MsaT029772.1:CDS
ATGATCATGTTGTCCCTTAT+AGG	0.293854	5:+81139588	None:intergenic
GGGACCACATCAACCCTATT+TGG	0.297637	5:-81140100	MsaT029772.1:CDS
TGAATGTATGCATCTGTAAT+AGG	0.347318	5:+81140263	None:intergenic
TGTTCTTCCTGTTGTTGAAC+AGG	0.360275	5:-81140121	MsaT029772.1:CDS
ACAATGCTTGATTGAGGATT+AGG	0.367320	5:+81140159	None:intergenic
GTTACATTAGTCACATTTAG+AGG	0.369899	5:+81139616	None:intergenic
ACAATGTACAATATATTAAG+AGG	0.384416	5:+81140010	None:intergenic
ACTTCCACACCGGCCAAATA+GGG	0.411577	5:+81140087	None:intergenic
TCGCTCAATCATACGTGAAA+TGG	0.436400	5:-81140355	MsaT029772.1:CDS
TACTTTCGATGCGCCTATCC+AGG	0.436737	5:-81139670	MsaT029772.1:CDS
ATTCATGTGAAGGAGTATTA+GGG	0.440488	5:+81140406	None:intergenic
AATGTAACAACTACCTATAA+GGG	0.449073	5:-81139601	MsaT029772.1:CDS
AAATTCCATTGGTCAAATGA+TGG	0.451151	5:-81140222	MsaT029772.1:CDS
TTGTAAATGATGCGTATCGC+TGG	0.453288	5:-81139895	MsaT029772.1:CDS
ACTCGATGTTGTACTTCAAA+AGG	0.454828	5:+81140534	None:intergenic
CGTGAAATGGTAAGAAAAGA+TGG	0.461858	5:-81140342	MsaT029772.1:CDS
GCGTATCGCTGGCGCAAATA+CGG	0.465731	5:-81139884	MsaT029772.1:CDS
ATTAGGATGATTATGCTGAT+TGG	0.483420	5:+81140176	None:intergenic
TTGGCCGGTGTGGAAGTTCA+AGG	0.489911	5:-81140081	MsaT029772.1:intron
TGTGGTCCCTGTTCAACAAC+AGG	0.490907	5:+81140114	None:intergenic
TTTCACTGTGCATCCTGGAT+AGG	0.494274	5:+81139657	None:intergenic
ACAGGAAGAACATGATCAAC+CGG	0.497996	5:+81140132	None:intergenic
GTTCTTCCTGTTGTTGAACA+GGG	0.504635	5:-81140120	MsaT029772.1:CDS
ATGCATACATTCAGACTGTC+GGG	0.523126	5:-81140253	MsaT029772.1:CDS
AATTCCATTGGTCAAATGAT+GGG	0.526059	5:-81140221	MsaT029772.1:CDS
CCACATCAACCCTATTTGGC+CGG	0.528483	5:-81140096	MsaT029772.1:CDS
AGAGACTAATGATGTAGCTA+TGG	0.536005	5:-81140481	MsaT029772.1:CDS
TTACATTAGTCACATTTAGA+GGG	0.537229	5:+81139617	None:intergenic
TAAGAAAAGATGGCTATAAG+TGG	0.538492	5:-81140332	MsaT029772.1:CDS
AATACTGATGCTACTAGAGT+TGG	0.539414	5:-81139971	MsaT029772.1:CDS
CGGTCCCATCATTTGACCAA+TGG	0.543680	5:+81140217	None:intergenic
ACATCGAGTGAATCCTGAAA+GGG	0.553354	5:-81140520	MsaT029772.1:CDS
TCATGAACCACCGACTGGTA+GGG	0.554218	5:-81139569	MsaT029772.1:CDS
GGTGGTACAATGCTTGATTG+AGG	0.561784	5:+81140153	None:intergenic
ATTAGACGTAATTCATGTGA+AGG	0.571178	5:+81140396	None:intergenic
TGTAGCTATGGCTTGTGACT+TGG	0.571450	5:-81140469	MsaT029772.1:CDS
TCAATCAAGCATTGTACCAC+CGG	0.571503	5:-81140151	MsaT029772.1:CDS
ATCATGAACCACCGACTGGT+AGG	0.573060	5:-81139570	MsaT029772.1:CDS
GATGCATACATTCAGACTGT+CGG	0.573245	5:-81140254	MsaT029772.1:CDS
CATGAACCACCGACTGGTAG+GGG	0.577060	5:-81139568	MsaT029772.1:CDS
CTCTGCGAGTGTTGCATGAG+TGG	0.578417	5:+81140429	None:intergenic
AACATCGAGTGAATCCTGAA+AGG	0.613815	5:-81140521	MsaT029772.1:CDS
TCAACCCTATTTGGCCGGTG+TGG	0.617265	5:-81140091	MsaT029772.1:CDS
CCGGCCAAATAGGGTTGATG+TGG	0.620302	5:+81140096	None:intergenic
TACATTAGTCACATTTAGAG+GGG	0.623510	5:+81139618	None:intergenic
CATGATCATGAACCACCGAC+TGG	0.628103	5:-81139574	MsaT029772.1:CDS
GGTGTAACTAAAATATTCGA+CGG	0.634019	5:+81140197	None:intergenic
TATTTGTAGCAGAGTCATGA+CGG	0.637103	5:+81139542	None:intergenic
GAAGTCTGAACAACAAGGTG+AGG	0.656502	5:+81139932	None:intergenic
TCGAGTGAATCCTGAAAGGG+AGG	0.657624	5:-81140517	MsaT029772.1:CDS
ATCACCTTGAACTTCCACAC+CGG	0.664656	5:+81140077	None:intergenic
CACTTGAAGTCTGAACAACA+AGG	0.680480	5:+81139927	None:intergenic
CGGACACCCCTACCAGTCGG+TGG	0.689482	5:+81139562	None:intergenic
TGACGGACACCCCTACCAGT+CGG	0.690312	5:+81139559	None:intergenic
GGAAGAACATGATCAACCGG+TGG	0.725841	5:+81140135	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	81139510	81140595	81139510	ID=MsaG029772
Chr5	mRNA	81139510	81140595	81139510	ID=MsaT029772.1;Parent=MsaG029772
Chr5	exon	81139510	81139696	81139510	ID=MsaT029772.1.exon3;Parent=MsaT029772.1
Chr5	CDS	81139510	81139696	81139510	ID=cds.MsaT029772.1;Parent=MsaT029772.1
Chr5	exon	81139851	81140052	81139851	ID=MsaT029772.1.exon2;Parent=MsaT029772.1
Chr5	CDS	81139851	81140052	81139851	ID=cds.MsaT029772.1;Parent=MsaT029772.1
Chr5	exon	81140082	81140595	81140082	ID=MsaT029772.1.exon1;Parent=MsaT029772.1
Chr5	CDS	81140082	81140595	81140082	ID=cds.MsaT029772.1;Parent=MsaT029772.1

Gene Sequence

>MsaT029772.1

ATGGTTTTGTCACAACAAAATGTTGATCGCAATGATTCTCCTTTTGAAGTACAACATCGAGTGAATCCTGAAAGGGAGGTCACATTGTCACAAGAGACTAATGATGTAGCTATGGCTTGTGACTTGGTATTATCACATTCTTCACCACTCATGCAACACTCGCAGAGCCCTAATACTCCTTCACATGAATTACGTCTAATACAATCTAATCAATACACTCGCTCAATCATACGTGAAATGGTAAGAAAAGATGGCTATAAGTGGAAAAAATATGGTGAGAAAAACATTAAGAAGAATGAACATAAAAGAGCCTATTACAGATGCATACATTCAGACTGTCGGGCAAAAAAGAAATTCCATTGGTCAAATGATGGGACCGTCGAATATTTTAGTTACACCAATCAGCATAATCATCCTAATCCTCAATCAAGCATTGTACCACCGGTTGATCATGTTCTTCCTGTTGTTGAACAGGGACCACATCAACCCTATTTGGCCGGTGTGGAAGTTCAAGTTTCAATATTACATGAAAAACCTCTTAATATATTGTACATTGTTGTGCATGCAGACAACAATACTGATGCTACTAGAGTTGGCGTGTTAACTAGTGAACCTCACCTTGTTGTTCAGACTTCAAGTGCAAATGAAGTTGTAAATGATGCGTATCGCTGGCGCAAATACGGAAGAAAAATGGTTAATGGAAAAACAATTCAAAGAAATTACTTTCGATGCGCCTATCCAGGATGCACAGTGAAAAAGTATGTCGAAAAGTCCCCTCTAAATGTGACTAATGTAACAACTACCTATAAGGGACAACATGATCATGAACCACCGACTGGTAGGGGTGTCCGTCATGACTCTGCTACAAATACTCAAATAATGCGTATTAATGGCGAGCCATAA

Protein sequence

>MsaT029772.1

MVLSQQNVDRNDSPFEVQHRVNPEREVTLSQETNDVAMACDLVLSHSSPLMQHSQSPNTPSHELRLIQSNQYTRSIIREMVRKDGYKWKKYGEKNIKKNEHKRAYYRCIHSDCRAKKKFHWSNDGTVEYFSYTNQHNHPNPQSSIVPPVDHVLPVVEQGPHQPYLAGVEVQVSILHEKPLNILYIVVHADNNTDATRVGVLTSEPHLVVQTSSANEVVNDAYRWRKYGRKMVNGKTIQRNYFRCAYPGCTVKKYVEKSPLNVTNVTTTYKGQHDHEPPTGRGVRHDSATNTQIMRINGEP*