AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG029784

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG029784 MtrunA17_Chr7g0214071 70.196 255 29 8 1 210 4 256 8.36e-107 307
MsaG029784 MtrunA17_Chr8g0385991 51.042 192 72 6 1 176 4 189 7.81e-59 184
MsaG029784 MtrunA17_Chr3g0131911 51.000 200 73 5 1 176 4 202 4.39e-58 183
MsaG029784 MtrunA17_Chr4g0042561 52.500 160 56 4 11 154 8 163 6.01e-48 158
MsaG029784 MtrunA17_Chr7g0252971 45.506 178 76 3 9 165 5 182 1.76e-47 159
MsaG029784 MtrunA17_Chr5g0417791 51.250 160 58 3 10 153 1 156 2.76e-47 156
MsaG029784 MtrunA17_Chr2g0318101 51.220 164 55 4 12 152 15 176 8.46e-46 155
MsaG029784 MtrunA17_Chr4g0047841 48.588 177 54 4 11 152 14 188 1.98e-45 154
MsaG029784 MtrunA17_Chr3g0109821 51.899 158 57 3 10 152 4 157 3.69e-45 159
MsaG029784 MtrunA17_Chr1g0147421 47.701 174 78 4 9 171 24 195 3.91e-45 153
MsaG029784 MtrunA17_Chr3g0139331 47.337 169 76 4 9 167 8 173 1.06e-44 152
MsaG029784 MtrunA17_Chr2g0309891 47.126 174 72 5 10 168 4 172 3.05e-44 150
MsaG029784 MtrunA17_Chr7g0263931 48.428 159 64 4 7 149 6 162 3.10e-44 150
MsaG029784 MtrunA17_Chr6g0484441 46.707 167 75 3 9 165 2 164 3.39e-44 150
MsaG029784 MtrunA17_Chr4g0017921 49.677 155 60 4 12 153 8 157 8.55e-44 149
MsaG029784 MtrunA17_Chr3g0124761 47.727 176 72 4 9 169 4 174 1.13e-43 147
MsaG029784 MtrunA17_Chr2g0326361 48.701 154 61 3 12 149 14 165 2.57e-43 147
MsaG029784 MtrunA17_Chr4g0018391 49.032 155 62 4 12 153 7 157 5.14e-43 147
MsaG029784 MtrunA17_Chr2g0309331 44.512 164 75 3 3 153 1 161 5.36e-43 147
MsaG029784 MtrunA17_Chr4g0060931 47.531 162 67 4 5 152 10 167 5.57e-43 147
MsaG029784 MtrunA17_Chr5g0405211 40.957 188 94 3 9 183 5 188 5.80e-43 147
MsaG029784 MtrunA17_Chr5g0398971 44.048 168 77 3 11 164 6 170 6.31e-43 147
MsaG029784 MtrunA17_Chr2g0318081 46.629 178 79 3 8 173 12 185 6.53e-43 147
MsaG029784 MtrunA17_Chr7g0253011 45.977 174 79 4 10 169 15 187 8.98e-43 147
MsaG029784 MtrunA17_Chr3g0091921 45.732 164 71 3 3 152 7 166 9.88e-43 145
MsaG029784 MtrunA17_Chr6g0481091 39.810 211 101 7 10 199 4 209 3.08e-42 142
MsaG029784 MtrunA17_Chr5g0433781 48.408 157 63 3 10 152 4 156 5.42e-42 149
MsaG029784 MtrunA17_Chr1g0183741 40.777 206 105 5 12 203 10 212 5.77e-42 142
MsaG029784 MtrunA17_Chr3g0130731 41.589 214 99 8 8 204 3 207 1.17e-41 142
MsaG029784 MtrunA17_Chr4g0056541 47.531 162 68 3 11 159 6 163 1.37e-41 144
MsaG029784 MtrunA17_Chr8g0372121 45.122 164 72 4 12 162 6 164 2.26e-41 142
MsaG029784 MtrunA17_Chr6g0461661 43.787 169 79 3 5 159 11 177 4.34e-41 143
MsaG029784 MtrunA17_Chr8g0346001 44.253 174 69 4 4 153 7 176 5.32e-41 144
MsaG029784 MtrunA17_Chr8g0359921 46.067 178 69 5 9 172 11 175 5.56e-41 142
MsaG029784 MtrunA17_Chr1g0200561 46.497 157 67 3 9 152 16 168 5.60e-41 142
MsaG029784 MtrunA17_Chr6g0453451 43.558 163 74 3 4 152 12 170 1.38e-40 140
MsaG029784 MtrunA17_Chr2g0312321 45.402 174 69 6 9 166 8 171 2.91e-40 139
MsaG029784 MtrunA17_Chr2g0316971 46.203 158 69 3 9 152 20 175 2.93e-40 141
MsaG029784 MtrunA17_Chr2g0311661 43.169 183 78 4 2 160 12 192 3.60e-40 139
MsaG029784 MtrunA17_Chr8g0384721 40.376 213 100 7 8 204 3 204 3.94e-40 138
MsaG029784 MtrunA17_Chr2g0311651 44.444 171 70 3 4 150 15 184 4.08e-40 139
MsaG029784 MtrunA17_Chr5g0442771 43.386 189 84 5 5 172 12 198 5.99e-40 138
MsaG029784 MtrunA17_Chr5g0400461 44.654 159 74 2 8 152 2 160 1.02e-39 138
MsaG029784 MtrunA17_Chr7g0261411 46.622 148 67 3 12 150 10 154 1.41e-39 137
MsaG029784 MtrunA17_Chr7g0243371 82.895 76 11 1 65 140 26 99 3.90e-39 130
MsaG029784 MtrunA17_Chr5g0417001 45.143 175 73 4 5 159 8 179 8.67e-39 137
MsaG029784 MtrunA17_Chr3g0144271 42.781 187 89 6 2 177 14 193 1.77e-38 137
MsaG029784 MtrunA17_Chr8g0361731 43.503 177 76 4 4 159 7 180 2.78e-38 136
MsaG029784 MtrunA17_Chr4g0054791 38.679 212 113 4 12 207 6 216 4.00e-38 134
MsaG029784 MtrunA17_Chr7g0217721 41.143 175 72 3 6 153 13 183 6.09e-38 134
MsaG029784 MtrunA17_Chr6g0453131 45.679 162 64 4 12 152 15 173 1.49e-37 134
MsaG029784 MtrunA17_Chr7g0217711 47.794 136 58 2 6 132 13 144 2.20e-37 128
MsaG029784 MtrunA17_Chr5g0428991 40.952 210 92 5 11 206 24 215 3.35e-37 136
MsaG029784 MtrunA17_Chr3g0128111 45.098 153 64 4 15 152 45 192 1.62e-36 128
MsaG029784 MtrunA17_Chr3g0128151 45.342 161 70 3 12 158 22 178 2.43e-36 134
MsaG029784 MtrunA17_Chr4g0038751 36.538 208 116 5 9 207 13 213 1.40e-34 124
MsaG029784 MtrunA17_Chr1g0197361 45.455 154 62 6 15 152 11 158 2.84e-33 125
MsaG029784 MtrunA17_Chr3g0130101 44.805 154 65 5 15 153 10 158 3.85e-33 122
MsaG029784 MtrunA17_Chr3g0092671 45.098 153 64 5 15 152 8 155 7.77e-33 123
MsaG029784 MtrunA17_Chr4g0076731 45.223 157 71 5 9 155 52 203 3.88e-32 120
MsaG029784 MtrunA17_Chr1g0201021 43.421 152 68 3 15 152 22 169 4.64e-32 121
MsaG029784 MtrunA17_Chr1g0197351 46.626 163 59 5 12 152 42 198 5.61e-32 120
MsaG029784 MtrunA17_Chr8g0345671 44.000 150 67 5 12 149 11 155 1.57e-31 118
MsaG029784 MtrunA17_Chr4g0050701 41.611 149 75 3 12 150 11 157 1.97e-30 110
MsaG029784 MtrunA17_Chr8g0364791 39.873 158 75 4 11 153 5 157 1.40e-29 114
MsaG029784 MtrunA17_Chr8g0345691 40.523 153 72 6 11 150 11 157 3.23e-28 109
MsaG029784 MtrunA17_Chr8g0384201 38.608 158 77 4 11 153 5 157 1.75e-27 108
MsaG029784 MtrunA17_Chr3g0113001 48.571 105 44 3 61 159 23 123 6.83e-25 99.0
MsaG029784 MtrunA17_Chr2g0321631 33.796 216 103 9 13 195 5 213 9.94e-25 97.4
MsaG029784 MtrunA17_Chr8g0384351 38.217 157 80 6 10 165 8 148 2.22e-24 95.1
MsaG029784 MtrunA17_Chr4g0026141 38.125 160 76 5 12 151 5 161 2.53e-24 96.7
MsaG029784 MtrunA17_Chr2g0321741 41.007 139 60 5 43 169 23 151 6.53e-24 97.4
MsaG029784 MtrunA17_Chr8g0345711 40.909 132 63 4 12 131 12 140 2.42e-23 92.0
MsaG029784 MtrunA17_Chr8g0345721 36.709 158 56 5 14 130 37 191 7.47e-23 91.7
MsaG029784 MtrunA17_Chr3g0113031 47.059 102 37 3 68 159 5 99 7.79e-23 92.8
MsaG029784 MtrunA17_Chr7g0266701 30.723 166 89 5 12 154 4 166 3.77e-20 85.5
MsaG029784 MtrunA17_Chr8g0345701 38.217 157 61 7 12 142 7 153 4.16e-20 83.6
MsaG029784 MtrunA17_Chr8g0345731 38.971 136 63 6 12 131 24 155 4.32e-20 83.6
MsaG029784 MtrunA17_Chr3g0130321 32.278 158 87 5 10 150 5 159 1.31e-17 77.8
MsaG029784 MtrunA17_Chr8g0345741 34.959 123 58 5 42 152 22 134 8.33e-17 74.3
MsaG029784 MtrunA17_Chr3g0113011 47.541 61 32 0 6 66 13 73 5.29e-14 64.7
MsaG029784 MtrunA17_Chr7g0251661 29.630 135 78 4 7 130 5 133 5.53e-13 64.3
MsaG029784 MtrunA17_Chr3g0113041 47.541 61 32 0 6 66 13 73 3.05e-12 60.1
MsaG029784 MtrunA17_Chr7g0251651 28.070 171 104 6 2 160 9 172 6.15e-12 62.0
MsaG029784 MtrunA17_Chr7g0251671 29.927 137 83 4 7 134 5 137 9.63e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG029784 AT5G13180.1 64.848 165 46 4 1 155 1 163 1.27e-67 208
MsaG029784 AT2G33480.2 63.291 158 47 3 4 154 7 160 1.84e-65 203
MsaG029784 AT2G33480.1 62.500 160 47 3 4 154 7 162 3.18e-65 202
MsaG029784 AT5G39610.1 46.707 167 71 3 1 153 9 171 2.02e-47 157
MsaG029784 AT3G04070.2 47.619 189 72 5 3 171 1 182 1.49e-46 157
MsaG029784 AT2G24430.2 50.602 166 67 4 6 160 10 171 1.58e-46 156
MsaG029784 AT2G24430.1 50.602 166 67 4 6 160 10 171 1.58e-46 156
MsaG029784 AT1G69490.1 51.534 163 58 4 12 158 9 166 5.60e-46 153
MsaG029784 AT5G61430.1 47.904 167 69 4 3 155 7 169 8.40e-46 154
MsaG029784 AT1G65910.1 49.045 157 62 3 10 152 4 156 8.92e-46 160
MsaG029784 AT1G33280.1 48.052 154 64 2 12 153 8 157 1.52e-45 153
MsaG029784 AT1G61110.1 52.047 171 51 5 8 152 12 177 4.33e-45 152
MsaG029784 AT4G10350.1 47.771 157 63 3 12 153 9 161 1.07e-44 152
MsaG029784 AT5G07680.1 47.826 161 66 4 9 155 14 170 1.64e-44 151
MsaG029784 AT3G04070.1 44.390 205 71 5 3 171 1 198 1.90e-44 152
MsaG029784 AT5G07680.2 48.734 158 63 4 12 155 3 156 2.09e-44 150
MsaG029784 AT4G27410.2 47.853 163 69 3 9 159 11 169 2.48e-44 150
MsaG029784 AT5G17260.1 39.352 216 112 3 10 210 4 215 2.91e-44 154
MsaG029784 AT3G04060.1 50.318 157 61 4 10 152 18 171 3.26e-44 150
MsaG029784 AT1G77450.1 45.143 175 75 4 3 162 1 169 5.06e-44 147
MsaG029784 AT1G76420.1 49.032 155 66 3 9 152 19 171 5.83e-44 150
MsaG029784 AT1G54330.1 49.383 162 67 2 10 160 4 161 9.92e-44 148
MsaG029784 AT4G35580.1 42.654 211 93 6 12 207 9 206 1.22e-43 153
MsaG029784 AT4G35580.3 42.654 211 93 6 12 207 9 206 1.35e-43 153
MsaG029784 AT4G35580.2 42.654 211 93 6 12 207 9 206 1.37e-43 153
MsaG029784 AT1G12260.2 45.833 168 74 3 12 166 7 170 1.61e-43 149
MsaG029784 AT3G18400.1 49.677 155 63 4 9 152 2 152 2.32e-43 148
MsaG029784 AT4G36160.1 45.556 180 75 5 12 176 10 181 2.49e-43 149
MsaG029784 AT4G36160.3 45.556 180 75 5 12 176 10 181 2.49e-43 149
MsaG029784 AT4G36160.2 45.556 180 75 5 12 176 14 185 2.56e-43 149
MsaG029784 AT1G12260.1 45.833 168 74 3 12 166 7 170 5.58e-43 149
MsaG029784 AT3G17730.1 47.771 157 64 4 10 152 4 156 7.62e-43 144
MsaG029784 AT3G03200.1 44.444 171 76 3 10 165 4 170 7.83e-43 150
MsaG029784 AT3G15170.1 47.024 168 72 5 9 162 17 181 8.12e-43 146
MsaG029784 AT1G62700.1 45.198 177 80 3 11 174 6 178 9.68e-43 148
MsaG029784 AT1G62700.2 45.198 177 80 3 11 174 6 178 9.68e-43 148
MsaG029784 AT2G18060.3 44.886 176 77 4 12 174 9 177 1.07e-42 147
MsaG029784 AT2G18060.1 44.886 176 77 4 12 174 9 177 1.07e-42 147
MsaG029784 AT5G18270.2 47.771 157 65 3 10 152 19 172 1.17e-42 146
MsaG029784 AT5G62380.2 49.045 157 63 4 10 153 5 157 1.83e-42 146
MsaG029784 AT5G62380.1 49.045 157 63 4 10 153 5 157 1.83e-42 146
MsaG029784 AT5G18270.1 47.771 157 65 3 10 152 19 172 2.06e-42 146
MsaG029784 AT1G33060.2 49.359 156 59 4 12 152 24 174 2.79e-42 151
MsaG029784 AT1G33060.1 49.359 156 59 4 12 152 24 174 3.25e-42 150
MsaG029784 AT3G12977.1 45.055 182 79 7 9 174 15 191 3.54e-42 144
MsaG029784 AT3G15510.1 50.000 160 55 4 16 152 21 178 3.66e-42 146
MsaG029784 AT5G66300.1 45.732 164 71 3 4 153 4 163 4.03e-42 144
MsaG029784 AT1G01720.1 41.589 214 97 7 10 204 5 209 8.18e-42 143
MsaG029784 AT4G27410.3 42.778 180 70 3 9 159 11 186 1.31e-41 143
MsaG029784 AT1G56010.2 44.253 174 77 4 9 166 16 185 1.40e-41 143
MsaG029784 AT5G46590.1 43.258 178 83 3 8 170 2 176 1.62e-41 142
MsaG029784 AT1G79580.3 45.399 163 72 3 4 153 9 167 4.13e-41 143
MsaG029784 AT1G79580.5 45.399 163 72 3 4 153 9 167 4.13e-41 143
MsaG029784 AT1G79580.4 45.399 163 72 3 4 153 9 167 4.13e-41 143
MsaG029784 AT1G79580.2 45.399 163 72 3 4 153 9 167 4.13e-41 143
MsaG029784 AT1G79580.1 45.399 163 72 3 4 153 9 167 4.13e-41 143
MsaG029784 AT3G29035.1 44.118 170 77 3 4 159 16 181 6.05e-41 142
MsaG029784 AT5G53950.1 47.097 155 66 3 12 152 17 169 1.21e-40 142
MsaG029784 AT2G46770.1 41.011 178 73 3 4 153 8 181 2.10e-40 141
MsaG029784 AT3G61910.1 40.722 194 82 6 4 169 3 191 2.21e-40 140
MsaG029784 AT1G52890.1 46.012 163 72 3 9 159 11 169 3.95e-40 139
MsaG029784 AT1G52880.1 47.368 171 62 3 16 166 21 183 6.01e-40 139
MsaG029784 AT1G71930.2 35.556 225 114 4 12 209 9 229 1.38e-39 138
MsaG029784 AT1G71930.1 35.556 225 114 4 12 209 9 229 1.38e-39 138
MsaG029784 AT5G08790.1 40.284 211 99 6 9 202 4 204 2.18e-39 137
MsaG029784 AT3G15500.1 44.444 171 79 3 9 167 11 177 3.19e-39 137
MsaG029784 AT5G63790.1 41.176 204 89 6 3 189 41 230 4.14e-39 137
MsaG029784 AT5G63790.2 41.176 204 89 6 3 189 51 240 5.11e-39 137
MsaG029784 AT5G39820.1 41.500 200 73 6 4 170 13 201 7.13e-39 137
MsaG029784 AT1G32770.1 41.279 172 72 4 7 153 11 178 1.43e-38 136
MsaG029784 AT4G17980.1 44.099 161 72 3 8 152 2 160 1.56e-38 134
MsaG029784 AT2G17040.1 40.816 196 86 7 9 181 4 192 1.74e-38 134
MsaG029784 AT4G17980.2 44.099 161 72 3 8 152 2 160 1.93e-38 134
MsaG029784 AT5G46590.2 45.578 147 66 2 8 143 2 145 5.59e-38 133
MsaG029784 AT3G10490.1 47.771 157 61 4 12 152 27 178 1.09e-37 131
MsaG029784 AT5G04410.1 48.718 156 60 4 12 152 9 159 1.13e-37 137
MsaG029784 AT3G10480.1 47.771 157 61 4 12 152 27 178 1.30e-37 135
MsaG029784 AT3G10500.1 48.077 156 61 4 12 152 9 159 1.50e-37 137
MsaG029784 AT2G33480.3 62.887 97 29 2 61 154 13 105 1.09e-36 127
MsaG029784 AT4G28530.1 42.012 169 70 4 11 154 9 174 1.81e-36 130
MsaG029784 AT3G10480.2 47.436 156 62 4 12 152 27 177 2.09e-36 132
MsaG029784 AT3G10490.2 47.771 157 61 4 12 152 27 178 2.93e-36 132
MsaG029784 AT2G43000.1 37.981 208 103 6 9 203 16 210 6.19e-36 127
MsaG029784 AT3G12910.1 45.181 166 64 6 10 150 20 183 1.00e-35 127
MsaG029784 AT1G32510.1 38.835 206 101 4 12 192 6 211 1.01e-35 127
MsaG029784 AT1G34190.1 47.853 163 62 6 6 152 11 166 2.40e-35 131
MsaG029784 AT3G49530.2 42.045 176 80 6 12 169 13 184 3.18e-35 129
MsaG029784 AT5G24590.2 45.963 161 60 6 12 153 13 165 3.35e-35 129
MsaG029784 AT3G49530.1 44.872 156 67 5 12 152 13 164 4.42e-35 129
MsaG029784 AT1G34180.3 51.049 143 52 4 2 132 7 143 1.20e-34 127
MsaG029784 AT1G26870.1 44.379 169 70 5 5 152 10 175 2.15e-34 126
MsaG029784 AT1G34180.1 51.049 143 52 4 2 132 7 143 2.93e-34 128
MsaG029784 AT1G34180.4 46.753 154 54 3 2 132 7 155 6.14e-34 126
MsaG029784 AT2G02450.1 47.020 151 66 5 15 155 54 200 9.23e-34 124
MsaG029784 AT2G02450.2 47.020 151 66 5 15 155 54 200 1.16e-33 124
MsaG029784 AT1G34180.2 48.052 154 52 4 2 132 7 155 1.89e-33 126
MsaG029784 AT3G10480.3 39.683 189 62 4 12 152 27 211 3.63e-32 122
MsaG029784 AT5G64060.1 41.509 159 75 4 8 152 2 156 1.02e-30 115
MsaG029784 AT5G09330.5 42.138 159 74 3 8 152 2 156 2.61e-30 116
MsaG029784 AT5G09330.2 42.138 159 74 3 8 152 2 156 2.61e-30 116
MsaG029784 AT5G09330.4 42.138 159 74 3 8 152 2 156 2.61e-30 116
MsaG029784 AT5G09330.3 42.138 159 74 3 8 152 2 156 2.61e-30 116
MsaG029784 AT5G09330.1 42.138 159 74 3 8 152 2 156 2.61e-30 116
MsaG029784 AT5G22290.1 38.788 165 78 5 15 169 24 175 5.75e-30 113
MsaG029784 AT2G27300.1 33.508 191 107 4 15 195 17 197 1.61e-29 112
MsaG029784 AT4G10350.2 54.348 92 35 2 65 153 27 114 1.83e-29 111
MsaG029784 AT3G44290.2 39.310 145 70 3 15 149 17 153 5.22e-29 108
MsaG029784 AT3G44290.1 39.310 145 70 3 15 149 17 153 4.71e-28 108
MsaG029784 AT5G64530.1 35.912 181 92 4 10 172 1 175 3.60e-26 100
MsaG029784 AT5G61430.2 50.000 100 41 3 61 155 11 106 4.09e-26 102
MsaG029784 AT1G56010.1 48.077 104 44 2 68 165 18 117 1.22e-25 100
MsaG029784 AT3G12977.2 45.000 120 56 4 61 174 23 138 1.24e-25 99.8
MsaG029784 AT1G32870.1 42.262 168 73 5 1 152 1 160 2.02e-25 103
MsaG029784 AT1G32870.2 42.262 168 73 5 1 152 1 160 2.27e-25 103
MsaG029784 AT1G32870.3 42.262 168 73 5 1 152 37 196 2.87e-25 103
MsaG029784 AT5G64530.2 43.548 124 63 3 10 132 1 118 1.68e-24 94.7
MsaG029784 AT5G14000.1 34.756 164 93 4 7 161 10 168 3.34e-24 95.5
MsaG029784 AT5G04395.1 39.189 148 65 3 9 133 25 170 3.73e-24 94.7
MsaG029784 AT4G01550.1 37.349 166 86 8 14 165 6 167 4.66e-24 99.0
MsaG029784 AT1G02230.1 34.463 177 96 6 13 176 4 173 8.39e-23 94.7
MsaG029784 AT5G14000.2 36.054 147 81 3 7 144 10 152 1.57e-22 89.7
MsaG029784 AT2G18060.2 48.421 95 41 3 81 174 2 89 1.76e-22 92.4
MsaG029784 AT4G01520.1 34.706 170 93 7 13 169 5 169 1.81e-22 92.8
MsaG029784 AT4G01540.4 35.503 169 89 7 15 169 7 169 2.20e-22 94.0
MsaG029784 AT4G01540.3 35.503 169 89 7 15 169 7 169 3.05e-22 93.6
MsaG029784 AT4G01540.2 35.119 168 91 7 15 169 7 169 3.48e-22 93.6
MsaG029784 AT4G01540.1 35.119 168 91 7 15 169 7 169 3.84e-22 94.0
MsaG029784 AT3G44350.2 34.591 159 83 4 12 152 5 160 2.62e-21 88.6
MsaG029784 AT3G04420.2 35.625 160 82 5 13 159 4 155 3.84e-21 89.4
MsaG029784 AT3G04420.1 35.625 160 82 5 13 159 4 155 4.19e-21 89.7
MsaG029784 AT1G02250.1 38.562 153 76 5 13 152 4 151 1.03e-20 89.0
MsaG029784 AT5G50820.1 32.701 211 100 9 3 202 8 187 3.53e-20 84.7
MsaG029784 AT3G10490.4 50.617 81 32 2 76 152 2 78 7.70e-20 86.3
MsaG029784 AT3G10490.3 50.617 81 32 2 76 152 2 78 7.70e-20 86.3
MsaG029784 AT3G44350.1 35.714 140 73 3 12 137 5 141 1.45e-19 82.0
MsaG029784 AT5G22380.1 33.758 157 81 4 15 151 8 161 2.00e-19 83.6
MsaG029784 AT2G43000.2 34.028 144 79 4 64 203 1 132 5.01e-19 81.6
MsaG029784 AT1G02220.1 35.526 152 76 5 13 151 4 146 1.17e-16 77.8
MsaG029784 AT5G22290.2 44.318 88 36 4 82 169 2 76 5.17e-15 71.6
MsaG029784 AT4G28530.2 33.588 131 60 3 11 116 9 137 5.71e-15 72.4
MsaG029784 AT3G55210.1 33.537 164 79 6 12 151 11 168 6.94e-14 68.9
MsaG029784 AT1G01010.1 31.847 157 84 6 14 152 5 156 7.41e-14 70.1
MsaG029784 AT3G56530.1 32.716 162 80 9 9 151 49 200 5.88e-13 67.0
MsaG029784 AT5G14000.3 52.830 53 25 0 7 59 10 62 1.13e-11 62.8
MsaG029784 AT5G41090.1 27.950 161 90 5 12 153 8 161 1.61e-11 61.6

Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCACTCCCATCCTCTTT+TGG 0.255864 5:+81240401 MsaT029784.1:CDS
CTGTTAGATCGGTTCACATT+TGG 0.324654 5:-81239931 None:intergenic
GAACTACAAACTCTGGTTAC+TGG 0.339051 5:+81239953 MsaT029784.1:CDS
CGGTTCACATTTGGATACTT+TGG 0.358558 5:-81239922 None:intergenic
GGTTGGAGTGAGAGGAAGTT+AGG 0.397038 5:-81240116 None:intergenic
TTCATGTTCATTTGTGATTG+AGG 0.408967 5:-81240363 None:intergenic
TCTTCGCAAGTCTGATCCTT+GGG 0.412746 5:+81239648 MsaT029784.1:CDS
TTACTGGAAGGCAACTGGTT+TGG 0.413426 5:+81239969 MsaT029784.1:CDS
AAGACGACTCGTGAAGTTGT+TGG 0.418647 5:+81240015 MsaT029784.1:CDS
ATCTTCGCAAGTCTGATCCT+TGG 0.421350 5:+81239647 MsaT029784.1:CDS
CTTCATCTGTTGGATGAAAA+CGG 0.429980 5:-81239552 None:intergenic
TGTTCAATATTTGAAGTGTA+AGG 0.430660 5:+81239582 MsaT029784.1:CDS
TCTGGTTACTGGAAGGCAAC+TGG 0.438388 5:+81239964 MsaT029784.1:CDS
ACAACAAGTTCTTCATCTGT+TGG 0.464543 5:-81239562 None:intergenic
CTCAGCTTCAAGTTCGAAAG+TGG 0.494091 5:+81240286 MsaT029784.1:CDS
AAGATCAACTTGAGGAATGA+TGG 0.494870 5:-81239629 None:intergenic
TTCATTTGTGATTGAGGAGG+AGG 0.495223 5:-81240357 None:intergenic
AGTTTGTAGTTCTGTTAGAT+CGG 0.518509 5:-81239942 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.518802 5:-81240410 None:intergenic
GGATTAAGCATTTCCAAAAG+AGG 0.521576 5:-81240414 None:intergenic
AGAAAGACTGACCAAGGGGT+TGG 0.532390 5:-81240133 None:intergenic
TTCCTCTCACTCCAACCCCT+TGG 0.538527 5:+81240122 MsaT029784.1:CDS
ACTTGAGGAATGATGGAAGC+AGG 0.539819 5:-81239622 None:intergenic
TCTAACAGAACTACAAACTC+TGG 0.548094 5:+81239946 MsaT029784.1:CDS
GACCAAGGGGTTGGAGTGAG+AGG 0.548262 5:-81240124 None:intergenic
CTCATGGTTCAAGAACTGAT+TGG 0.548704 5:+81240076 MsaT029784.1:CDS
AAGCATTTCCAAAAGAGGAT+GGG 0.563423 5:-81240409 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 5:+81239658 MsaT029784.1:CDS
GGATGAAAACGGAAACCTGC+TGG 0.571341 5:-81239541 None:intergenic
TGTGTCGCATATTTCTGAAG+AGG 0.578122 5:+81240237 MsaT029784.1:CDS
TACAGAGGCAAACCACCTCA+TGG 0.581454 5:+81240060 MsaT029784.1:CDS
ATGTTCATTTGTGATTGAGG+AGG 0.585375 5:-81240360 None:intergenic
GGTGAAGTGAGATTGCCAGC+AGG 0.595430 5:+81239526 MsaT029784.1:CDS
CGCATATTTCTGAAGAGGAG+AGG 0.611502 5:+81240242 MsaT029784.1:CDS
TCAGTTCTTGAACCATGAGG+TGG 0.615010 5:-81240072 None:intergenic
TACAAACTCTGGTTACTGGA+AGG 0.624609 5:+81239957 MsaT029784.1:CDS
TATATACCAGGTAAATCCCA+AGG 0.628388 5:-81239664 None:intergenic
GACTTGCGAAGATCAACTTG+AGG 0.662987 5:-81239637 None:intergenic
ATTTCTGAAGAGGAGAGGTG+AGG 0.700060 5:+81240247 MsaT029784.1:CDS
CAATCAGTTCTTGAACCATG+AGG 0.707588 5:-81240075 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 81239505 81240433 81239505 ID=MsaG029784
Chr5 mRNA 81239505 81240433 81239505 ID=MsaT029784.1;Parent=MsaG029784
Chr5 exon 81239505 81239679 81239505 ID=MsaT029784.1.exon1;Parent=MsaT029784.1
Chr5 CDS 81239505 81239679 81239505 ID=cds.MsaT029784.1;Parent=MsaT029784.1
Chr5 exon 81239899 81240143 81239899 ID=MsaT029784.1.exon2;Parent=MsaT029784.1
Chr5 CDS 81239899 81240143 81239899 ID=cds.MsaT029784.1;Parent=MsaT029784.1
Chr5 exon 81240221 81240433 81240221 ID=MsaT029784.1.exon3;Parent=MsaT029784.1
Chr5 CDS 81240221 81240433 81240221 ID=cds.MsaT029784.1;Parent=MsaT029784.1
Gene Sequence

>MsaT029784.1

ATGGATTTTGTGAAGAAGAATGGTGAAGTGAGATTGCCAGCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATATTTGAAGTGTAAGGTCTTCTCTTTCTTTTTACCTGCTTCCATCATTCCTCAAGTTGATCTTCGCAAGTCTGATCCTTGGGATTTACCTGGTACTTTTTCAGTACTAAAGAAGCCAAAGTATCCAAATGTGAACCGATCTAACAGAACTACAAACTCTGGTTACTGGAAGGCAACTGGTTTGGACAAACAAATCATGAATTCTTCGAAGACGACTCGTGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTAACTTCCTCTCACTCCAACCCCTTGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGGAGAGGTGAGGTGAAGAAGAAGCAGAACTCAGCTTCAAGTTCGAAAGTGGTTGTTTTCTATGATTTCTTGGGAGAGAAGAAGAACAATACTGATGCATCCTCCTCCTCAATCACAAATGAACATGAAAATGAAGACAGCAGTAACTCACTCCCATCCTCTTTTGGAAATGCTTAA
Protein sequence

>MsaT029784.1

MDFVKKNGEVRLPAGFRFHPTDEELVVQYLKCKVFSFFLPASIIPQVDLRKSDPWDLPGTFSVLKKPKYPNVNRSNRTTNSGYWKATGLDKQIMNSSKTTREVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKRRGEVKKKQNSASSSKVVVFYDFLGEKKNNTDASSSSITNEHENEDSSNSLPSSFGNA*