AlfalfaGEDB | MsaG029810

M. sativa ssp. caerulea / MsaG029810

KEGG: K13203
GO: -
PFAM: PF12874.10

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029810	tr\|G7K4Z3\|G7K4Z3_MEDTR	76.672	583	71	4	7	588	14	532	0.0	834

TFs/TRs:

Gene ID	Type	Classification
MsaG029810	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000705	MsaG029810	0.800904	1.938071e-48	2.674362e-46
MsaG000910	MsaG029810	0.802649	8.529445e-49	1.224678e-46
MsaG002636	MsaG029810	0.811006	1.488312e-50	2.604746e-48
MsaG004010	MsaG029810	0.854323	2.562431e-61	1.616067e-58
MsaG004267	MsaG029810	0.801946	1.188238e-48	1.678892e-46
MsaG004588	MsaG029810	0.820615	1.095474e-52	2.448801e-50
MsaG005102	MsaG029810	0.825602	7.613883e-54	1.947257e-51
MsaG005530	MsaG029810	0.802591	8.764620e-49	1.256804e-46
MsaG005854	MsaG029810	0.805171	2.566032e-49	3.905881e-47
MsaG006332	MsaG029810	0.828285	1.751135e-54	4.827086e-52
MsaG006327	MsaG029810	0.808355	5.491860e-50	9.013787e-48
MsaG006355	MsaG029810	0.843517	2.490683e-58	1.087432e-55
MsaG006426	MsaG029810	0.847325	2.344776e-59	1.160766e-56
MsaG007146	MsaG029810	0.814743	2.279645e-51	4.378274e-49
MsaG008125	MsaG029810	0.864906	1.733031e-64	1.631176e-61
MsaG008424	MsaG029810	0.803366	6.073883e-49	8.866100e-47
MsaG008589	MsaG029810	0.821807	5.836323e-53	1.346502e-50
MsaG008848	MsaG029810	0.826471	4.743555e-54	1.242937e-51
MsaG009874	MsaG029810	0.823972	1.837628e-53	4.494776e-51
MsaG010307	MsaG029810	0.823521	2.339936e-53	5.653919e-51
MsaG011147	MsaG029810	0.806348	1.456358e-49	2.278837e-47
MsaG012026	MsaG029810	0.828418	1.627101e-54	4.502134e-52
MsaG012162	MsaG029810	0.801131	1.742622e-48	2.417046e-46
MsaG012334	MsaG029810	0.840884	1.230490e-57	4.938695e-55
MsaG012396	MsaG029810	0.806302	1.488761e-49	2.327047e-47
MsaG012675	MsaG029810	0.802534	9.007228e-49	1.289892e-46
MsaG013971	MsaG029810	0.802120	1.094653e-48	1.552765e-46
MsaG015319	MsaG029810	0.857447	3.160321e-62	2.232443e-59
MsaG015322	MsaG029810	0.849987	4.321636e-60	2.341277e-57
MsaG015720	MsaG029810	0.805797	1.899917e-49	2.934302e-47
MsaG016118	MsaG029810	0.808859	4.292040e-50	7.130765e-48
MsaG016159	MsaG029810	0.809720	2.812001e-50	4.769664e-48
MsaG016367	MsaG029810	0.821535	6.741819e-53	1.544248e-50
MsaG016448	MsaG029810	0.846450	4.058080e-59	1.950865e-56
MsaG017167	MsaG029810	0.819125	2.392199e-52	5.141513e-50
MsaG017561	MsaG029810	0.803091	6.918328e-49	1.003506e-46
MsaG017887	MsaG029810	0.802791	7.976969e-49	1.149038e-46
MsaG018680	MsaG029810	0.800905	1.937494e-48	2.673625e-46
MsaG019060	MsaG029810	0.803945	4.610894e-49	6.821537e-47
MsaG019278	MsaG029810	0.807828	7.102472e-50	1.151074e-47
MsaG020730	MsaG029810	0.805861	1.841526e-49	2.848492e-47
MsaG020840	MsaG029810	0.802907	7.550246e-49	1.090495e-46
MsaG020863	MsaG029810	0.820102	1.434528e-52	3.163685e-50
MsaG021888	MsaG029810	0.858861	1.205266e-62	8.974990e-60
MsaG022579	MsaG029810	0.823850	1.962173e-53	4.783514e-51
MsaG022880	MsaG029810	0.843955	1.904085e-58	8.429917e-56
MsaG023078	MsaG029810	0.830565	4.920329e-55	1.447116e-52
MsaG023302	MsaG029810	0.803433	5.883426e-49	8.601413e-47
MsaG023869	MsaG029810	0.801550	1.431858e-48	2.004943e-46
MsaG023997	MsaG029810	0.808107	6.200401e-50	1.011635e-47
MsaG024877	MsaG029810	0.815616	1.461645e-51	2.869975e-49
MsaG025903	MsaG029810	0.802102	1.104423e-48	1.565954e-46
MsaG025985	MsaG029810	0.838704	4.517543e-57	1.693510e-54
MsaG027759	MsaG029810	0.834565	5.066498e-56	1.675166e-53
MsaG027994	MsaG029810	0.813994	3.331350e-51	6.278984e-49
MsaG028181	MsaG029810	0.813506	4.262650e-51	7.936463e-49
MsaG028585	MsaG029810	0.810377	2.032799e-50	3.503553e-48
MsaG028831	MsaG029810	0.828603	1.468479e-54	4.084371e-52
MsaG029076	MsaG029810	0.806906	1.111575e-49	1.762315e-47
MsaG029377	MsaG029810	0.801330	1.587360e-48	2.211688e-46
MsaG029635	MsaG029810	0.816870	7.690856e-52	1.559180e-49
MsaG029684	MsaG029810	0.823431	2.456099e-53	5.920022e-51
MsaG029805	MsaG029810	0.913451	1.493355e-83	1.775921e-79
MsaG029810	MsaG029986	0.800722	2.110371e-48	2.900340e-46
MsaG029810	MsaG030197	0.822353	4.368027e-53	1.022635e-50
MsaG029810	MsaG030451	0.814326	2.816993e-51	5.353817e-49
MsaG029810	MsaG030455	0.857557	2.932862e-62	2.080225e-59
MsaG029810	MsaG030494	0.835212	3.489106e-56	1.176108e-53
MsaG029810	MsaG033763	0.812692	6.416819e-51	1.170681e-48
MsaG029810	MsaG034621	0.816697	8.405101e-52	1.696410e-49
MsaG029810	MsaG035144	0.820572	1.120449e-52	2.501865e-50
MsaG029810	MsaG035216	0.812786	6.123267e-51	1.119723e-48
MsaG029810	MsaG035673	0.813741	3.785948e-51	7.090676e-49
MsaG029810	MsaG036482	0.820752	1.019216e-52	2.286605e-50
MsaG029810	MsaG037969	0.803758	5.040943e-49	7.425412e-47
MsaG029810	MsaG038522	0.828114	1.923917e-54	5.278202e-52
MsaG029810	MsaG039139	0.802107	1.101732e-48	1.562317e-46
MsaG029810	MsaG040453	0.814202	2.998755e-51	5.681770e-49
MsaG029810	MsaG040511	0.806897	1.116471e-49	1.769720e-47
MsaG029810	MsaG041293	0.824261	1.572358e-53	3.876264e-51
MsaG029810	MsaG041854	0.827140	3.288096e-54	8.777475e-52
MsaG029810	MsaG042057	0.809684	2.861528e-50	4.849560e-48
MsaG029810	MsaG042534	0.827762	2.336448e-54	6.346916e-52
MsaG029810	MsaG044265	0.828021	2.025552e-54	5.542427e-52
MsaG029810	MsaG044316	0.810598	1.821703e-50	3.156650e-48
MsaG029810	MsaG044321	0.834691	4.711919e-56	1.563872e-53
MsaG029810	MsaG045606	0.806658	1.253612e-49	1.975955e-47
MsaG029810	MsaG045646	0.839760	2.411656e-57	9.343766e-55
MsaG029810	MsaG046278	0.823282	2.659918e-53	6.385782e-51
MsaG029810	MsaG046355	0.800184	2.713796e-48	3.684353e-46
MsaG029810	MsaG046368	0.816142	1.117264e-51	2.223275e-49
MsaG029810	MsaG002980	0.842357	5.054848e-58	2.126232e-55
MsaG029810	MsaG000822	0.842913	3.603244e-58	1.542903e-55
MsaG029810	MsaG009146	0.839971	2.126820e-57	8.295215e-55
MsaG029810	MsaG008699	0.807348	8.971787e-50	1.437391e-47
MsaG029810	MsaG014519	0.806183	1.577110e-49	2.458148e-47
MsaG029810	MsaG012002	0.827211	3.163043e-54	8.460286e-52
MsaG029810	MsaG013382	0.815086	1.915316e-51	3.710452e-49
MsaG029810	MsaG022641	0.849752	5.025119e-60	2.700703e-57
MsaG029810	MsaG018327	0.820488	1.171611e-52	2.610294e-50
MsaG029810	MsaG027150	0.806481	1.365839e-49	2.143968e-47
MsaG029810	MsaG031514	0.811592	1.112345e-50	1.974934e-48
MsaG029810	MsaG030749	0.800982	1.868745e-48	2.583258e-46
MsaG029810	MsaG033107	0.850709	2.717786e-60	1.509396e-57
MsaG029810	MsaG032454	0.800466	2.379068e-48	3.250684e-46
MsaG029810	MsaG037049	0.808970	4.064816e-50	6.771237e-48
MsaG029810	MsaG037042	0.815044	1.956898e-51	3.786966e-49
MsaG029810	MsaG044603	0.828884	1.256823e-54	3.523292e-52
MsaG029810	MsaG043110	0.809671	2.880670e-50	4.880367e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029810	MtrunA17_Chr5g0447971	76.672	583	71	4	7	588	14	532	0.0	834
MsaG029810	MtrunA17_Chr3g0086321	68.240	233	70	1	360	588	161	393	1.13e-100	311
MsaG029810	MtrunA17_Chr3g0086321	76.613	124	25	1	65	188	80	199	2.51e-56	194
MsaG029810	MtrunA17_Chr3g0086321	32.766	235	110	6	296	490	161	387	1.63e-17	85.1
MsaG029810	MtrunA17_Chr3g0086321	30.120	166	92	3	417	580	82	225	3.35e-12	68.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029810	AT5G61190.10	27.128	188	106	5	393	580	240	396	1.78e-11	67.8
MsaG029810	AT5G61190.4	26.702	191	109	5	393	583	240	399	2.06e-11	67.4
MsaG029810	AT5G61190.2	26.702	191	109	5	393	583	240	399	2.06e-11	67.4
MsaG029810	AT5G61190.1	27.128	188	106	5	393	580	240	396	2.07e-11	67.8
MsaG029810	AT5G61190.7	27.128	188	106	5	393	580	146	302	2.17e-11	67.4
MsaG029810	AT5G61190.3	27.128	188	106	5	393	580	146	302	2.17e-11	67.4
MsaG029810	AT5G61190.11	27.128	188	106	5	393	580	240	396	2.78e-11	67.0
MsaG029810	AT5G61190.8	27.128	188	106	5	393	580	240	396	2.88e-11	67.0
MsaG029810	AT5G61190.5	27.128	188	106	5	393	580	240	396	2.90e-11	67.0
MsaG029810	AT5G61190.6	27.128	188	106	5	393	580	240	396	2.93e-11	67.0
MsaG029810	AT5G61190.9	27.128	188	106	5	393	580	240	396	3.12e-11	67.0

Find 124 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCTGGCAACTTCAAATTTA+TGG	0.103793	5:-81542570	MsaT029810.1:CDS
CTTCTTAGGCTCTGATTGTT+TGG	0.209399	5:+81542158	None:intergenic
ACAGAATCAACCTGTTTCTT+AGG	0.226882	5:+81542048	None:intergenic
TTCGGCTAAAGGACCAATTA+AGG	0.271027	5:+81541792	None:intergenic
ACAAAATCAACCTGCTTCTT+AGG	0.280074	5:+81542144	None:intergenic
TTCAATGCTTCTAATATTGC+AGG	0.282177	5:-81542829	None:intergenic
TGCGCAGAAGGCAAACTTGC+AGG	0.288386	5:+81542687	None:intergenic
TTCTTAGGCTCTGATTGTTT+GGG	0.304970	5:+81542159	None:intergenic
TTTCTTAGGCTCTGATTGTT+TGG	0.305574	5:+81541870	None:intergenic
ATACTATCAACCTGTTTCTT+AGG	0.309233	5:+81542306	None:intergenic
CCGCTGCCAACACCGACTTT+TGG	0.320862	5:+81539984	None:intergenic
ACAGAATCAACCTGTTTCTT+AGG	0.324318	5:+81541664	None:intergenic
ACAGAATCAACCTGTTTCTT+AGG	0.324318	5:+81541760	None:intergenic
ACAGAATCAACCTGTTTCTT+AGG	0.324318	5:+81541856	None:intergenic
ATCCAAGGACAAACATTAAT+TGG	0.324738	5:-81542093	MsaT029810.1:CDS
CTTCTGCACGTAATGGTTCC+TGG	0.342961	5:-81542587	MsaT029810.1:CDS
ACCGCAATAGGCACTTCAAT+TGG	0.345252	5:-81539945	MsaT029810.1:CDS
TCACCATAGCAGCATGATTA+TGG	0.346041	5:+81539745	None:intergenic
ACGGAATCAACCTGTTTCTT+AGG	0.353929	5:+81542240	None:intergenic
CGTGCAGAAGGCAAACTTGC+AGG	0.359812	5:+81542600	None:intergenic
GTTCTTCAAGTGTTTCTTAC+CGG	0.360756	5:+81540025	None:intergenic
ATCCAAGGACAAGCGTTAAT+TGG	0.362815	5:-81541709	MsaT029810.1:CDS
GCCAATGCTTCTAATATTGC+CGG	0.369202	5:-81542655	MsaT029810.1:CDS
ATCCAAGGACAAGCATTAAT+TGG	0.369738	5:-81541901	MsaT029810.1:CDS
ATCCAATCACAAGCCTTAAT+TGG	0.371873	5:-81541805	MsaT029810.1:CDS
GAAACAGGTTGATTCTGTTA+AGG	0.378526	5:-81541659	MsaT029810.1:CDS
ATCCAAGGTCAAGCGTTAAT+TGG	0.378876	5:-81542351	MsaT029810.1:CDS
CGCTTGAGTTCGGCAATAGA+TGG	0.381144	5:+81540164	None:intergenic
GGCTCTGATTGTTCGGCTAC+AGG	0.383641	5:+81541973	None:intergenic
TTTCTTAGGCTCTGATTGTT+CGG	0.390268	5:+81541678	None:intergenic
TTTCTTAGGCTCTGATTGTT+CGG	0.390268	5:+81541774	None:intergenic
TTTCTTAGGCTCTGATTGTT+CGG	0.390268	5:+81542254	None:intergenic
GGCTCTGATTGTTCGGCTAC+AGG	0.393801	5:+81542261	None:intergenic
TGAACAGAAGGCAAACTTGC+AGG	0.394062	5:+81542774	None:intergenic
GGCTCTGATTGTTCGGCTAT+AGG	0.407509	5:+81541685	None:intergenic
GCAATCAGAGCCTAAGAAAC+AGG	0.410131	5:-81542316	MsaT029810.1:CDS
AAGCTTTGCTGACTTTGGTT+TGG	0.410273	5:+81542520	None:intergenic
TCTGAAAGCTTTGCTGACTT+TGG	0.410594	5:+81542515	None:intergenic
GCCATAAATTTGAAGTTGCC+AGG	0.413010	5:+81542569	None:intergenic
GGCTCTGATTGTTCGGCTAA+AGG	0.413854	5:+81541781	None:intergenic
GACTGCAAAATTACAAGCAT+TGG	0.415529	5:+81542741	None:intergenic
GACCAATTAATGTTTGTCCT+TGG	0.416054	5:+81542091	None:intergenic
ACTACCACCACCACCGCAAT+AGG	0.416616	5:-81539957	MsaT029810.1:CDS
ACAATCAGAGCCTAAGAAAC+AGG	0.424333	5:-81541866	MsaT029810.1:CDS
TTCGCATGAGATGCAATTGT+AGG	0.424733	5:+81542396	None:intergenic
GACCAATTAAGGCTTGTGAT+TGG	0.426163	5:+81541803	None:intergenic
GGTGATTATTTAAATTTGCC+TGG	0.434831	5:+81539775	None:intergenic
TTGCAGGCGCTGCTGAAGTC+TGG	0.435502	5:+81542616	None:intergenic
GCAATCAGATCCTAAGAAAC+AGG	0.437003	5:-81542058	MsaT029810.1:CDS
ACATTAATTGGTCCTGTAGC+CGG	0.438110	5:-81542081	MsaT029810.1:CDS
ACAATCAGAGCCTAAGAAAC+AGG	0.441726	5:-81541674	MsaT029810.1:CDS
ACAATCAGAGCCTAAGAAAC+AGG	0.441726	5:-81541770	MsaT029810.1:CDS
ACAATCAGAGCCTAAGAAAC+AGG	0.441726	5:-81542250	MsaT029810.1:CDS
GACCAATTAACGCTTGTCCT+TGG	0.442236	5:+81541707	None:intergenic
GGCTCTGATTGCTCGCCTAC+AGG	0.444213	5:+81542327	None:intergenic
AATGCCATCATTAGACTTCA+AGG	0.445716	5:+81540190	None:intergenic
GACCAATTAATGCTTGTCCT+TGG	0.452219	5:+81541899	None:intergenic
GGATCTGATTGCCCGGCTAC+AGG	0.453935	5:+81542069	None:intergenic
ACATATAACAAACATGTTGC+TGG	0.455549	5:-81541598	MsaT029810.1:CDS
GACCGATTAACGCTTGTCCT+TGG	0.456245	5:+81541995	None:intergenic
TCCTTGGATCCTACTTGTGT+CGG	0.456469	5:+81542011	None:intergenic
TCCTTCAATACTTCTTGTGT+CGG	0.457555	5:+81542203	None:intergenic
AGCTACACTGCACACTTGTC+CGG	0.457647	5:-81540044	MsaT029810.1:CDS
ATCCAAGGACAAGCGTTAAT+CGG	0.462764	5:-81541997	MsaT029810.1:CDS
ATCACCGTTACGCTTGAGTT+CGG	0.470795	5:+81540154	None:intergenic
ACCGACACAAGAAGTATTGA+AGG	0.474071	5:-81542204	MsaT029810.1:CDS
CTTCTAATATTGCCGGCTGT+TGG	0.475497	5:-81542648	MsaT029810.1:CDS
CTTCTAATATTGCAGGCTGT+TGG	0.480500	5:-81542822	MsaT029810.1:CDS
GCCGGCAATATTAGAAGCAT+TGG	0.481716	5:+81542654	None:intergenic
CATTAATTGGTCCTGTAGCC+GGG	0.486089	5:-81542080	MsaT029810.1:CDS
TTGCTGACTTTGGTTTGGTT+AGG	0.492552	5:+81542525	None:intergenic
CCGCAATAGGCACTTCAATT+GGG	0.497753	5:-81539944	MsaT029810.1:CDS
TATTGCGGTGGTGGTGGTAG+TGG	0.498143	5:+81539959	None:intergenic
AGTTTGCCTTCTGCACGTAA+TGG	0.498221	5:-81542594	MsaT029810.1:CDS
CTTGCAAAATTCACACCATA+CGG	0.505040	5:+81540088	None:intergenic
GACCAATTAACGCTTGACCT+TGG	0.509177	5:+81542349	None:intergenic
AGTTTGCCTTCTGTTCAGAA+TGG	0.514605	5:-81542768	MsaT029810.1:CDS
CATATAACAAACATGTTGCT+GGG	0.516681	5:-81541597	MsaT029810.1:CDS
AGGCACTTCAATTGGGCCAC+AGG	0.517728	5:-81539937	MsaT029810.1:CDS
TGAAGTGCCTATTGCGGTGG+TGG	0.518303	5:+81539950	None:intergenic
CAGCATGATTATGGTCACTA+AGG	0.520547	5:+81539754	None:intergenic
TCATGCTGCTATGGTGAAGA+AGG	0.523999	5:-81539739	MsaT029810.1:CDS
GGCATACCATTCTGCGCAGA+AGG	0.536308	5:+81542675	None:intergenic
TTTCTTAGGATCTGATTGCC+CGG	0.536513	5:+81542062	None:intergenic
GCTGCTATGGTGAAGAAGGC+AGG	0.537781	5:-81539735	MsaT029810.1:CDS
CCAAAAGTCGGTGTTGGCAG+CGG	0.541495	5:-81539984	MsaT029810.1:CDS
ACAATCAGAGCCTAAGAAGC+AGG	0.543600	5:-81542154	MsaT029810.1:CDS
AAAAGCTGCTAAGAAAATCA+AGG	0.554241	5:-81540120	MsaT029810.1:CDS
TGGGAGAAAGCATGCTGCTA+AGG	0.554649	5:-81541578	MsaT029810.1:intron
AAACGTAAAGCTGTGGAAAG+AGG	0.559914	5:-81539852	MsaT029810.1:CDS
AAGAAGGCAGGGTTAATCAC+TGG	0.566902	5:-81539723	MsaT029810.1:CDS
GTCGGTTTGTACATTCTCAA+CGG	0.567858	5:+81542221	None:intergenic
TGACCATAATCATGCTGCTA+TGG	0.569530	5:-81539748	MsaT029810.1:CDS
GGAATACCATTCTGAACAGA+AGG	0.573481	5:+81542762	None:intergenic
AGTGCCTATTGCGGTGGTGG+TGG	0.576879	5:+81539953	None:intergenic
AGTTTGCCTTCTGCGCAGAA+TGG	0.578105	5:-81542681	MsaT029810.1:CDS
TCAAATCCAAAAGTCGGTGT+TGG	0.581990	5:-81539990	MsaT029810.1:CDS
ATGTACAAACCGACACAAGT+AGG	0.584340	5:-81542020	MsaT029810.1:CDS
CAATGTGGTGTGTAATAGCC+AGG	0.584891	5:-81539793	MsaT029810.1:CDS
AAACAGGTTGATAGTATACA+AGG	0.585879	5:-81542300	MsaT029810.1:CDS
GTTGCCTTGAAGTCTAATGA+TGG	0.591860	5:-81540194	MsaT029810.1:CDS
ACATGCAATGTTGTATGCGT+TGG	0.594466	5:-81541628	MsaT029810.1:CDS
GCAGGGTTAATCACTGGTTG+AGG	0.595222	5:-81539717	None:intergenic
CTGCTATGGTGAAGAAGGCA+GGG	0.602051	5:-81539734	MsaT029810.1:CDS
GACAGAGAAACGTAAAGCTG+TGG	0.602727	5:-81539859	MsaT029810.1:CDS
CAGGAACCATTACGTGCAGA+AGG	0.603247	5:+81542588	None:intergenic
CAAGCGTTAATTGGTCCTGT+AGG	0.605906	5:-81542342	MsaT029810.1:CDS
TTGAAGTCTAATGATGGCAT+TGG	0.606462	5:-81540188	MsaT029810.1:CDS
ACTGACACAAGTAGTATCCA+AGG	0.607332	5:-81541916	MsaT029810.1:CDS
ACTGACACAAGTAGTATCCA+AGG	0.607332	5:-81542108	MsaT029810.1:CDS
TCAAGGTTGATGAATCCGTA+TGG	0.610274	5:-81540103	MsaT029810.1:CDS
ACTGACACAAGTAGTATCCA+AGG	0.612630	5:-81542366	MsaT029810.1:CDS
TGGTGTGATGAACCAACAGC+CGG	0.618587	5:+81542636	None:intergenic
ACCGACACAAGTAGGATCCA+AGG	0.619525	5:-81542012	MsaT029810.1:CDS
ACTAACTCAAGTAATATCCA+AGG	0.626304	5:-81541724	MsaT029810.1:CDS
TTCAGATAAACCGAAAACAA+AGG	0.627362	5:-81539904	MsaT029810.1:CDS
CCCAATTGAAGTGCCTATTG+CGG	0.632472	5:+81539944	None:intergenic
AAACTGTCAAATCCAAAAGT+CGG	0.636332	5:-81539996	MsaT029810.1:CDS
TAAGAAACACTTGAAGAACA+TGG	0.658000	5:-81540021	MsaT029810.1:CDS
AACACAAGAAGAATTTGCAA+CGG	0.663613	5:-81542428	MsaT029810.1:CDS
AATTGAAGTGCCTATTGCGG+TGG	0.664606	5:+81539947	None:intergenic
ATTGCCGAACTCAAGCGTAA+CGG	0.670672	5:-81540158	MsaT029810.1:CDS
AGATAAACCGAAAACAAAGG+AGG	0.682827	5:-81539901	MsaT029810.1:CDS
ATTGTGCACTTTATGCAATG+TGG	0.685678	5:-81539808	MsaT029810.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	81539719	81542847	81539719	ID=MsaG029810
Chr5	mRNA	81539719	81542847	81539719	ID=MsaT029810.1;Parent=MsaG029810
Chr5	exon	81539719	81540216	81539719	ID=MsaT029810.1.exon2;Parent=MsaT029810.1
Chr5	CDS	81539719	81540216	81539719	ID=cds.MsaT029810.1;Parent=MsaT029810.1
Chr5	exon	81541579	81542847	81541579	ID=MsaT029810.1.exon1;Parent=MsaT029810.1
Chr5	CDS	81541579	81542847	81541579	ID=cds.MsaT029810.1;Parent=MsaT029810.1

Gene Sequence

>MsaT029810.1

ATGCTTCTAATATTGCAGGCTGTTGGTTCATCACACGAGACTTCAGCAGTGCCTGCAAGTTTGCCTTCTGTTCAGAATGGTATTCCAATGCTTGTAATTTTGCAGTCTGCTGGTTCATCACACGAGACTTCAGCAGCGCCTGCAAGTTTGCCTTCTGCGCAGAATGGTATGCCAATGCTTCTAATATTGCCGGCTGTTGGTTCATCACACCAGACTTCAGCAGCGCCTGCAAGTTTGCCTTCTGCACGTAATGGTTCCTGGCAACTTCAAATTTATGGCAATCAGACTACAATAATGTTGCCTAACCAAACCAAAGTCAGCAAAGCTTTCAGATGTGAAGTGTGTGAAATTGATGTCAATAGCCAAGTCTCTTTTGAAAAGCACATAGCTGGAAAGAAACACAAGAAGAATTTGCAACGGCAGACTAATCCTACAATTGCATCTCATGCGAATTTACAAACTGACACAAGTAGTATCCAAGGTCAAGCGTTAATTGGTCCTGTAGGCGAGCAATCAGAGCCTAAGAAACAGGTTGATAGTATACAAGGACAAGCTTTAATCTGTCCTGTAGCCGAACAATCAGAGCCTAAGAAACAGGTTGATTCCGTTGAGAATGTACAAACCGACACAAGAAGTATTGAAGGACAAGCGTTAATTGTTGCTGTACCCAAACAATCAGAGCCTAAGAAGCAGGTTGATTTTGTTAAGAATGTACAAACTGACACAAGTAGTATCCAAGGACAAACATTAATTGGTCCTGTAGCCGGGCAATCAGATCCTAAGAAACAGGTTGATTCTGTTAAGAATGTACAAACCGACACAAGTAGGATCCAAGGACAAGCGTTAATCGGTCCTGTAGCCGAACAATCAGAGCCTAAAAAACAGGTTGATTCTGTTAAGAATGTACAAACTGACACAAGTAGTATCCAAGGACAAGCATTAATTGGTCTTGTAGCCAAACAATCAGAGCCTAAGAAACAGGTTGATTCTGTTAAGAATGTACAAACTGACACAAGTAGTATCCAATCACAAGCCTTAATTGGTCCTTTAGCCGAACAATCAGAGCCTAAGAAACAGGTTGATTCTGTTAAGAATGTACAAACTAACTCAAGTAATATCCAAGGACAAGCGTTAATTGGTCCTATAGCCGAACAATCAGAGCCTAAGAAACAGGTTGATTCTGTTAAGGTTTGCTCAACATGCAATGTTGTATGCGTTGGTCAAGATACATATAACAAACATGTTGCTGGGAGAAAGCATGCTGCTAAGGTTGCCTTGAAGTCTAATGATGGCATTGGTCCATCTATTGCCGAACTCAAGCGTAACGGTGATGCTCTAATTGAAAAAGCTGCTAAGAAAATCAAGGTTGATGAATCCGTATGGTGTGAATTTTGCAAGATTAATTGTAACAGCAAGTATAGCTACACTGCACACTTGTCCGGTAAGAAACACTTGAAGAACATGGAGAAACTGTCAAATCCAAAAGTCGGTGTTGGCAGCGGTGCCACTACCACCACCACCGCAATAGGCACTTCAATTGGGCCACAGGAAAAGCCAGATTCAGATAAACCGAAAACAAAGGAGGTATCAGTACTTGATATCGAGACAGAGAAACGTAAAGCTGTGGAAAGAGGAGCTGCAGTCGATGATATTAAATTGTGCACTTTATGCAATGTGGTGTGTAATAGCCAGGCAAATTTAAATAATCACCTTAGTGACCATAATCATGCTGCTATGGTGAAGAAGGCAGGGTTAATCACTGGTTGA

Protein sequence

>MsaT029810.1

MLLILQAVGSSHETSAVPASLPSVQNGIPMLVILQSAGSSHETSAAPASLPSAQNGMPMLLILPAVGSSHQTSAAPASLPSARNGSWQLQIYGNQTTIMLPNQTKVSKAFRCEVCEIDVNSQVSFEKHIAGKKHKKNLQRQTNPTIASHANLQTDTSSIQGQALIGPVGEQSEPKKQVDSIQGQALICPVAEQSEPKKQVDSVENVQTDTRSIEGQALIVAVPKQSEPKKQVDFVKNVQTDTSSIQGQTLIGPVAGQSDPKKQVDSVKNVQTDTSRIQGQALIGPVAEQSEPKKQVDSVKNVQTDTSSIQGQALIGLVAKQSEPKKQVDSVKNVQTDTSSIQSQALIGPLAEQSEPKKQVDSVKNVQTNSSNIQGQALIGPIAEQSEPKKQVDSVKVCSTCNVVCVGQDTYNKHVAGRKHAAKVALKSNDGIGPSIAELKRNGDALIEKAAKKIKVDESVWCEFCKINCNSKYSYTAHLSGKKHLKNMEKLSNPKVGVGSGATTTTTAIGTSIGPQEKPDSDKPKTKEVSVLDIETEKRKAVERGAAVDDIKLCTLCNVVCNSQANLNNHLSDHNHAAMVKKAGLITG*