AlfalfaGEDB | MsaG029918

M. sativa ssp. caerulea / MsaG029918

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029918	sp\|O65499\|ZAT3_ARATH	40.727	275	79	6	35	296	71	274	9.96e-54	181

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029918	tr\|G7KFE8\|G7KFE8_MEDTR	61.585	328	50	14	16	340	25	279	2.46e-95	294

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TFs/TRs:

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Gene ID	Type	Classification
MsaG029918	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG018355	MsaG029918	0.805099	2.657111e-49	4.037568e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029918	MtrunA17_Chr5g0448611	61.585	328	50	14	16	340	25	279	4.73e-99	294
MsaG029918	MtrunA17_Chr5g0425411	65.414	266	29	9	19	282	16	220	6.14e-95	282
MsaG029918	MtrunA17_Chr4g0012791	24.484	339	155	8	41	315	79	380	2.41e-20	91.7
MsaG029918	MtrunA17_Chr4g0061301	31.100	209	89	5	124	331	347	501	1.39e-18	86.7
MsaG029918	MtrunA17_Chr1g0197281	30.198	202	84	5	125	322	156	304	1.37e-13	70.9
MsaG029918	MtrunA17_Chr4g0012691	30.256	195	71	5	121	315	216	345	9.63e-11	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029918	AT4G35280.1	40.727	275	79	6	35	296	71	274	1.01e-54	181
MsaG029918	AT2G17180.1	57.937	126	36	2	39	156	63	179	1.71e-39	140
MsaG029918	AT5G56200.1	31.746	189	74	5	123	311	340	473	1.33e-14	75.1
MsaG029918	AT1G02040.1	46.250	80	36	2	83	155	101	180	2.33e-11	64.3

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Find 98 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGTCATTGGGAAAA+AGG	0.228044	5:+83212020	MsaT029918.1:CDS
AAAGTCCCAACCTCAAATCA+AGG	0.519574	5:-83212232	None:intergenic
AACAATAACAATAACAATGT+TGG	0.482830	5:+83211876	MsaT029918.1:CDS
AACCTCAAATCAAGGCTGAG+GGG	0.678963	5:-83212224	None:intergenic
AACGAAATCATAAGCATCGG+AGG	0.603782	5:+83211936	MsaT029918.1:CDS
AAGAAGAAGCGTAAGGAATT+CGG	0.417811	5:+83211288	MsaT029918.1:CDS
AAGCACTCGGTGGTCACAAA+AGG	0.500352	5:+83212003	MsaT029918.1:CDS
AAGCGTAAGGAATTCGGCTC+CGG	0.438803	5:+83211294	MsaT029918.1:CDS
AATAACAATAACAATGTTGG+TGG	0.522015	5:+83211879	MsaT029918.1:CDS
AATAACGAAATCATAAGCAT+CGG	0.587279	5:+83211933	MsaT029918.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	83211234	83212256	83211234	ID=MsaG029918
Chr5	mRNA	83211234	83212256	83211234	ID=MsaT029918.1;Parent=MsaG029918
Chr5	exon	83211234	83212256	83211234	ID=MsaT029918.1.exon1;Parent=MsaT029918.1
Chr5	CDS	83211234	83212256	83211234	ID=cds.MsaT029918.1;Parent=MsaT029918.1

Gene Sequence

>MsaT029918.1

ATGAAAGATCATCATCAACATCGTCCATGTTCTTCTTCATCTGTTGTTACTGGTAAGAAGAAGCGTAAGGAATTCGGCTCCGGGGAATCATCATCATCTGGTAATAACAACAACATTGCTCGTAGTTGCACTGAATGCGGTAAGATATTCTGGTCATGGAAGGCTCTTTTCGGTCACATGCGTTGTCATCCTGAGCGTCAATGGAGAGGAATTAACCCTCCTCCTAATTTCAGAAGACCACAACTCATCAATACCGCGACTCCAGAAGAACAGGAAGGTGCTGCTTCTTTGCTCTTACTTGCAAATTCAAATTCAAATTCAAAGAACAAGAAACCAGCAGTTGCAACAACAACAACGGTGGTGGATGATCAGTTTGTGTGTTCGTGTTGCAACAAAGTATTTGGATCTCATCAGGCACTTGGAGGACACAGGGCTAGTCACAAGAATGTCAAGGGTTGTTTCGCCAATACAACAACAATAACCGCTTCTTCTACGTGGACCAGCAGTACCCCTCAAGGAATTGGAGGAGGAGATCATGCTTTTGTTACTGCTGCTGCTGCTTCTGTTGATCACGATGACAACCATCATCAACAACACCCAATGATCATGGTGCCTCAGACTCGTGGTGGTGACGGTTATAATAACAATAACAATAACAATGTTGGTGGAAACGTGGAAGGGGAAGCGGTTAATAGCAGTAATAACGAAATCATAAGCATCGGAGGAGGACACAAGTGTAGCATATGTTTGAGGGTATTCACCTCTGGACAAGCACTCGGTGGTCACAAAAGGTGTCATTGGGAAAAAGGGGAAACCACCACACCATCAACAACATTACCATTCGATTCTTCTTCTACCGCAACTGCAACTGCAACTGCAACAACATCCAACAACAACAAGTCTAGTAGTGTTGTTAATGTCGTTGATTTGAATTTCCCTTTTCCACCACCACCTCCTGATGATGATGATCATCATCCCGATTCTTCTTCTCCCCTCAGCCTTGATTTGAGGTTGGGACTTTAA

Protein sequence

>MsaT029918.1

MKDHHQHRPCSSSSVVTGKKKRKEFGSGESSSSGNNNNIARSCTECGKIFWSWKALFGHMRCHPERQWRGINPPPNFRRPQLINTATPEEQEGAASLLLLANSNSNSKNKKPAVATTTTVVDDQFVCSCCNKVFGSHQALGGHRASHKNVKGCFANTTTITASSTWTSSTPQGIGGGDHAFVTAAAASVDHDDNHHQQHPMIMVPQTRGGDGYNNNNNNNVGGNVEGEAVNSSNNEIISIGGGHKCSICLRVFTSGQALGGHKRCHWEKGETTTPSTTLPFDSSSTATATATATTSNNNKSSSVVNVVDLNFPFPPPPPDDDDHHPDSSSPLSLDLRLGL*