AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG029919


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG029919 MtrunA17_Chr5g0448621 94.626 949 16 14 1 930 1 933 0.0 1810
MsaG029919 MtrunA17_Chr3g0143921 37.423 970 419 31 25 909 29 895 2.02e-170 520
MsaG029919 MtrunA17_Chr1g0203081 36.388 371 185 10 115 450 124 478 1.31e-58 218
MsaG029919 MtrunA17_Chr1g0203081 58.824 119 42 1 601 712 560 678 2.12e-33 139
MsaG029919 MtrunA17_Chr1g0203081 33.333 105 68 2 797 900 850 953 7.77e-12 69.7
MsaG029919 MtrunA17_Chr6g0472281 34.037 379 207 9 103 450 100 466 7.38e-53 199
MsaG029919 MtrunA17_Chr6g0472281 37.421 318 164 8 594 907 553 839 1.16e-47 183
MsaG029919 MtrunA17_Chr4g0033791 32.520 369 204 10 111 448 143 497 1.65e-46 180
MsaG029919 MtrunA17_Chr4g0033791 33.908 348 188 7 594 907 562 901 2.08e-40 161
MsaG029919 MtrunA17_Chr2g0329671 30.894 369 210 11 111 449 168 521 1.77e-45 177
MsaG029919 MtrunA17_Chr2g0329671 65.957 94 28 1 601 690 593 686 2.19e-31 132
MsaG029919 MtrunA17_Chr2g0329671 38.318 107 59 3 822 927 856 956 3.34e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG029919 AT4G35270.2 39.960 1006 453 28 14 929 18 962 0.0 611
MsaG029919 AT4G35270.1 39.960 1006 453 28 14 929 18 962 0.0 611
MsaG029919 AT4G35270.3 39.960 1006 453 28 14 929 18 962 0.0 611
MsaG029919 AT4G35270.4 39.960 1006 453 28 14 929 18 962 0.0 611
MsaG029919 AT2G17150.1 39.435 956 463 21 14 924 22 906 0.0 601
MsaG029919 AT2G17150.6 39.435 956 463 21 14 924 22 906 0.0 601
MsaG029919 AT2G17150.4 41.004 717 343 15 220 924 3 651 1.78e-155 473
MsaG029919 AT2G17150.5 37.988 666 313 18 14 636 22 630 5.54e-122 385
MsaG029919 AT2G17150.3 37.988 666 313 18 14 636 22 630 5.54e-122 385
MsaG029919 AT2G17150.2 37.707 663 316 16 14 636 22 627 9.09e-122 385
MsaG029919 AT1G20640.1 39.700 466 211 13 24 449 15 450 3.24e-91 308
MsaG029919 AT1G20640.1 80.435 92 18 0 604 695 548 639 2.98e-40 160
MsaG029919 AT1G20640.1 43.820 89 49 1 830 918 745 832 1.04e-16 85.9
MsaG029919 AT1G20640.3 39.700 466 211 13 24 449 15 450 3.24e-91 308
MsaG029919 AT1G20640.3 80.435 92 18 0 604 695 548 639 2.98e-40 160
MsaG029919 AT1G20640.3 43.820 89 49 1 830 918 745 832 1.04e-16 85.9
MsaG029919 AT1G20640.2 39.700 466 211 13 24 449 15 450 3.24e-91 308
MsaG029919 AT1G20640.2 80.435 92 18 0 604 695 548 639 2.98e-40 160
MsaG029919 AT1G20640.2 43.820 89 49 1 830 918 745 832 1.04e-16 85.9
MsaG029919 AT1G76350.2 38.266 473 227 12 16 448 7 454 1.78e-88 300
MsaG029919 AT1G76350.2 38.782 312 137 5 595 906 530 787 2.63e-49 188
MsaG029919 AT1G76350.1 38.266 473 227 12 16 448 7 454 1.78e-88 300
MsaG029919 AT1G76350.1 38.782 312 137 5 595 906 530 787 2.63e-49 188
MsaG029919 AT1G76350.4 38.266 473 227 12 16 448 7 454 1.78e-88 300
MsaG029919 AT1G76350.4 38.782 312 137 5 595 906 530 787 2.63e-49 188
MsaG029919 AT1G76350.3 38.266 473 227 12 16 448 7 454 1.78e-88 300
MsaG029919 AT1G76350.3 38.782 312 137 5 595 906 530 787 2.63e-49 188
MsaG029919 AT4G24020.1 35.215 372 198 9 115 455 147 506 7.25e-57 213
MsaG029919 AT4G24020.1 71.250 80 23 0 612 691 589 668 1.52e-28 124
MsaG029919 AT4G24020.1 40.244 82 48 1 826 907 860 940 6.61e-14 76.6
MsaG029919 AT1G64530.1 32.619 420 214 10 91 467 80 473 2.34e-56 210
MsaG029919 AT1G64530.1 70.115 87 26 0 602 688 544 630 9.99e-32 134
MsaG029919 AT4G38340.2 33.753 397 187 10 115 478 43 396 9.55e-54 200
MsaG029919 AT4G38340.2 76.190 84 20 0 606 689 419 502 3.89e-35 144
MsaG029919 AT4G38340.1 33.584 399 189 10 113 478 112 467 5.17e-53 199
MsaG029919 AT4G38340.1 76.190 84 20 0 606 689 490 573 6.27e-35 143
MsaG029919 AT1G64530.2 37.667 300 167 7 172 467 35 318 6.36e-52 194
MsaG029919 AT1G64530.2 70.115 87 26 0 602 688 389 475 5.79e-32 134
MsaG029919 AT2G43500.3 31.313 396 220 13 114 481 162 533 1.76e-47 184
MsaG029919 AT2G43500.3 33.837 331 181 8 599 896 575 900 1.56e-40 162
MsaG029919 AT2G43500.9 31.313 396 220 13 114 481 162 533 1.76e-47 184
MsaG029919 AT2G43500.9 33.837 331 181 8 599 896 575 900 1.56e-40 162
MsaG029919 AT2G43500.6 31.313 396 220 13 114 481 162 533 1.76e-47 184
MsaG029919 AT2G43500.6 33.837 331 181 8 599 896 575 900 1.56e-40 162
MsaG029919 AT2G43500.1 31.313 396 220 13 114 481 162 533 1.76e-47 184
MsaG029919 AT2G43500.1 33.837 331 181 8 599 896 575 900 1.56e-40 162
MsaG029919 AT2G43500.10 31.313 396 220 13 114 481 162 533 1.76e-47 184
MsaG029919 AT2G43500.10 33.837 331 181 8 599 896 575 900 1.56e-40 162
MsaG029919 AT2G43500.11 31.313 396 220 13 114 481 162 533 1.76e-47 184
MsaG029919 AT2G43500.11 33.837 331 181 8 599 896 575 900 1.56e-40 162
MsaG029919 AT2G43500.7 31.313 396 220 13 114 481 162 533 1.76e-47 184
MsaG029919 AT2G43500.7 33.837 331 181 8 599 896 575 900 1.56e-40 162
MsaG029919 AT2G43500.8 31.313 396 220 13 114 481 162 533 1.76e-47 184
MsaG029919 AT2G43500.8 33.837 331 181 8 599 896 575 900 1.56e-40 162
MsaG029919 AT2G43500.2 31.313 396 220 13 114 481 162 533 2.22e-47 183
MsaG029919 AT2G43500.2 32.267 344 182 9 599 896 575 913 5.15e-37 150
MsaG029919 AT3G59580.2 32.329 365 195 12 114 448 105 447 1.72e-46 180
MsaG029919 AT3G59580.2 32.836 402 216 11 570 926 492 884 1.64e-42 168
MsaG029919 AT3G59580.3 32.329 365 195 12 114 448 105 447 1.72e-46 180
MsaG029919 AT3G59580.3 32.836 402 216 11 570 926 492 884 1.64e-42 168
MsaG029919 AT3G59580.1 32.329 365 195 12 114 448 105 447 1.72e-46 180
MsaG029919 AT3G59580.1 32.836 402 216 11 570 926 492 884 1.64e-42 168
MsaG029919 AT4G24020.2 42.857 224 120 4 227 450 6 221 6.87e-46 176
MsaG029919 AT4G24020.2 71.250 80 23 0 612 691 309 388 7.47e-29 124
MsaG029919 AT4G24020.2 40.244 82 48 1 826 907 580 660 5.59e-14 76.6
MsaG029919 AT2G43500.5 30.562 409 219 14 114 481 162 546 4.53e-45 176
MsaG029919 AT2G43500.5 33.837 331 181 8 599 896 588 913 1.52e-40 162
MsaG029919 AT2G43500.4 30.562 409 219 14 114 481 162 546 4.53e-45 176
MsaG029919 AT2G43500.4 33.837 331 181 8 599 896 588 913 1.52e-40 162

Find 252 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTGGTTCTAAAATATT+TGG 0.109133 5:+83236572 MsaT029919.1:CDS
TCACAAGTTGATGCAGTTTC+AGG 0.213418 5:+83235304 MsaT029919.1:CDS
CCTCTCCCTGTCCCAGTTGC+AGG 0.228251 5:-83235458 None:intergenic
CTATTCCTTGTCCATTAAAA+AGG 0.233171 5:-83234889 None:intergenic
ACACTTCATCATCATGTTCT+TGG 0.245600 5:+83235341 MsaT029919.1:CDS
AGTGGTTGTGAGTGTGAATT+AGG 0.254215 5:-83234054 None:intergenic
CATCACAACATGATGGTTAA+TGG 0.277621 5:-83236205 None:intergenic
CGAACATGAACGTTCATGTT+TGG 0.296631 5:-83234118 None:intergenic
GTGACCTTGAATTCCTCTTT+AGG 0.298111 5:-83235433 None:intergenic
GCTGCTGCTGCTGCAGTACT+TGG 0.307792 5:-83235507 None:intergenic
TTCACTGAGGTTGTTGGACC+TGG 0.313997 5:-83233929 None:intergenic
ACAACGTCCTTATTCAGATA+TGG 0.314618 5:+83234008 MsaT029919.1:CDS
TTCCAGGCCACAGTTGGTCT+TGG 0.325912 5:-83236390 None:intergenic
CTGCTGTTGCGGAAAGTGTT+TGG 0.328361 5:-83236720 None:intergenic
TTGTTGTTCAACAAGCTTGT+AGG 0.330299 5:+83235146 MsaT029919.1:CDS
AGCTGTTAGGAGAAGGTTGC+TGG 0.337480 5:+83233690 MsaT029919.1:CDS
TGAAGAATTATTGTTGTTCC+AGG 0.338271 5:-83236406 None:intergenic
CTTGTGATTGATTCTGTTCA+AGG 0.342934 5:+83235979 MsaT029919.1:CDS
CAGCAACAGCAGCAGCAATA+TGG 0.346597 5:+83234175 MsaT029919.1:CDS
CTTTCTTTCACTGAGGTTGT+TGG 0.347488 5:-83233935 None:intergenic
GATACTCACTGCACGCTTCT+TGG 0.347793 5:-83234865 None:intergenic
ATGTTTGGATTCACAGAAAC+AGG 0.348347 5:-83234103 None:intergenic
GTAATTGATGAGGGTTTGAT+TGG 0.357282 5:-83234269 None:intergenic
GCTCACCATGCCAACATGTT+TGG 0.357991 5:+83234989 MsaT029919.1:CDS
ATCAATAGCAAAACAAGGTT+TGG 0.360027 5:-83234933 None:intergenic
TTTAATGGACAAGGAATAGT+AGG 0.370257 5:+83234893 MsaT029919.1:CDS
TCAAGGTCACAACCTGCAAC+TGG 0.383522 5:+83235446 MsaT029919.1:CDS
GTTGGTGACATGGATGTATT+GGG 0.388812 5:+83234839 MsaT029919.1:CDS
ACATGATGATGAAGTGTCTT+TGG 0.391870 5:-83235335 None:intergenic
GAACTTATAAGGATGGAATA+TGG 0.394254 5:+83233593 None:intergenic
TGTTGGTGACATGGATGTAT+TGG 0.399788 5:+83234838 MsaT029919.1:CDS
GTGGCGGACGGTGGTGTGTT+TGG 0.399995 5:+83233626 MsaT029919.1:CDS
AGGTAATTTGTTTCCTGCAT+GGG 0.403034 5:-83236172 None:intergenic
TCCCATAGGAATATTATTGT+TGG 0.405829 5:-83233777 None:intergenic
AAGGGAAGTAGTGGTGGATC+AGG 0.407775 5:+83234749 MsaT029919.1:CDS
AACCCTACAGGAGCTCCTTT+AGG 0.408172 5:+83236234 MsaT029919.1:CDS
GCTTATAGTCTTCTCTGCCT+TGG 0.409851 5:-83235656 None:intergenic
TGCTTACCTTTACTGCTTGT+GGG 0.411463 5:-83234462 None:intergenic
GTCCAACAATAATATTCCTA+TGG 0.413406 5:+83233775 MsaT029919.1:CDS
GATATAATTGAGGAGCTGTT+AGG 0.415430 5:+83233677 MsaT029919.1:CDS
TCTTCGAGTGGGAGAAAGTC+CGG 0.415488 5:+83235619 MsaT029919.1:CDS
TGATCATCATGATTTGCTGC+TGG 0.416595 5:-83233854 None:intergenic
ATCACAACATGATGGTTAAT+GGG 0.417086 5:-83236204 None:intergenic
GGAGCCCATGTTAGTGCTAA+TGG 0.417934 5:-83234683 None:intergenic
GGAATATGGTGGTGGGTTAG+TGG 0.419214 5:+83233607 MsaT029919.1:CDS
AGCCAGTGAGAACAGTTTGA+TGG 0.421619 5:+83233718 MsaT029919.1:CDS
TAGAACCAAGTTGTTCATAT+CGG 0.422101 5:-83236562 None:intergenic
GTTCTGAGACAATACTTTGC+CGG 0.425225 5:+83235685 MsaT029919.1:CDS
CTTGGTTCTTCGCTTGTCCC+CGG 0.425229 5:-83235638 None:intergenic
AATAATATTCCTATGGGAAT+GGG 0.432653 5:+83233782 MsaT029919.1:CDS
CTAAAATATTTGGATGATGA+AGG 0.433572 5:+83236582 MsaT029919.1:CDS
GTGCTTACCTTTACTGCTTG+TGG 0.434781 5:-83234463 None:intergenic
CCTGCAGCTGATGGTAGTCC+TGG 0.436480 5:-83236296 None:intergenic
ATGTAACTATTTGTTGTTGT+TGG 0.438329 5:-83235256 None:intergenic
AGTAGTGGTGGATCAGGTTG+TGG 0.439161 5:+83234755 MsaT029919.1:CDS
CCAAGTTGTTCATATCGGTT+AGG 0.439803 5:-83236557 None:intergenic
GCAGTTGCAGTGCTCAACTC+TGG 0.440164 5:-83236045 None:intergenic
CAGGCCACAGTTGGTCTTGG+AGG 0.440343 5:-83236387 None:intergenic
GAAAGGCGTCTCCGTGTCAT+TGG 0.441468 5:+83235396 MsaT029919.1:CDS
AGAGATGGTGGATTGGTCCT+AGG 0.444559 5:+83233900 MsaT029919.1:CDS
ATTCCTCTTTAGGCTCTTGA+AGG 0.446937 5:-83235423 None:intergenic
AGCAGCAAATCATGATGATC+AGG 0.449423 5:+83233856 MsaT029919.1:CDS
ATCATCAACACTATTAGAAA+GGG 0.450500 5:+83236428 MsaT029919.1:CDS
ATGTTTAGATCAGGAGGAAA+GGG 0.450977 5:+83234731 MsaT029919.1:CDS
ATTTGGATGATGAAGGAGAA+TGG 0.452226 5:+83236589 MsaT029919.1:CDS
TGTAACTATTTGTTGTTGTT+GGG 0.453915 5:-83235255 None:intergenic
CATCATCAACACTATTAGAA+AGG 0.454053 5:+83236427 MsaT029919.1:CDS
TAGGTACCCATATCTGAATA+AGG 0.456078 5:-83234015 None:intergenic
AGGGCTGTTCTCCTCCTCAT+AGG 0.456492 5:-83234034 None:intergenic
CAATAATATTCCTATGGGAA+TGG 0.456868 5:+83233781 MsaT029919.1:CDS
ATCATACTCATCTGATCCGT+TGG 0.460586 5:-83234782 None:intergenic
TAGGTAATTTGTTTCCTGCA+TGG 0.461046 5:-83236173 None:intergenic
GTTGGACCTGGATTTGCCCT+AGG 0.461314 5:-83233917 None:intergenic
GCAGAAGGTGCCATACAGAT+TGG 0.464022 5:+83236003 MsaT029919.1:CDS
CAGAGTGAAGGCAACTTTCG+CGG 0.465319 5:+83236458 MsaT029919.1:CDS
TGCATCTAATATTAATATCC+AGG 0.467131 5:+83236278 MsaT029919.1:CDS
AGAGAAGACTATAAGCTTGC+CGG 0.467714 5:+83235663 MsaT029919.1:CDS
CTCCAAGACCAACTGTGGCC+TGG 0.468418 5:+83236388 MsaT029919.1:CDS
TCACAACCTGCAACTGGGAC+AGG 0.468696 5:+83235452 MsaT029919.1:CDS
AGTGCTCAACTCTGGGAAGC+TGG 0.469437 5:-83236037 None:intergenic
AACCTCAGTGAAAGAAAGAT+TGG 0.471224 5:+83233940 MsaT029919.1:CDS
CGGTGGTGTGTTTGGACCGA+TGG 0.471629 5:+83233634 MsaT029919.1:CDS
TCGGTGTCACGACAATCTTT+AGG 0.473241 5:-83235091 None:intergenic
GCAAAGTATTGTCTCAGAAC+CGG 0.476829 5:-83235682 None:intergenic
TGACCGACGACCACAAGCAC+CGG 0.477127 5:-83235590 None:intergenic
GGAGGAGGAATGTTTAGATC+AGG 0.477556 5:+83234722 MsaT029919.1:CDS
TGCTGTTGCTGCTGATGCCG+CGG 0.477584 5:-83234163 None:intergenic
TTCTTGGATTGCACATATGA+TGG 0.479350 5:+83235357 MsaT029919.1:CDS
TTGAGCACTGCAACTGCTAA+TGG 0.479597 5:+83236051 MsaT029919.1:CDS
TCTGACTGCAAGCAGAGGGT+GGG 0.481776 5:-83236149 None:intergenic
GACCGACGACCACAAGCACC+GGG 0.487207 5:-83235589 None:intergenic
CAACGTCCTTATTCAGATAT+GGG 0.488699 5:+83234009 MsaT029919.1:CDS
TGGTTAATGGGAGTAGTCAT+AGG 0.489970 5:-83236192 None:intergenic
GGAGGAATGTTTAGATCAGG+AGG 0.492628 5:+83234725 MsaT029919.1:CDS
CCTAACCGATATGAACAACT+TGG 0.492729 5:+83236557 MsaT029919.1:CDS
GGTGTGTTTGGACCGATGGT+GGG 0.493593 5:+83233638 MsaT029919.1:CDS
CAGAAGGTGCCATACAGATT+GGG 0.493685 5:+83236004 MsaT029919.1:CDS
GTTTAGCTTGCAAGCAATGT+GGG 0.495528 5:+83236494 MsaT029919.1:CDS
GAATATCCCACAAGCAGTAA+AGG 0.495824 5:+83234456 MsaT029919.1:CDS
AGAGCCTAAAGAGGAATTCA+AGG 0.496647 5:+83235429 MsaT029919.1:CDS
CCTCCTTGTTGTTGTAAGCA+AGG 0.497570 5:-83234704 None:intergenic
TCAGGAGGAAAGGGAAGTAG+TGG 0.499450 5:+83234740 MsaT029919.1:CDS
GCTTGCAGTCAGACCCATGC+AGG 0.503409 5:+83236159 MsaT029919.1:CDS
AGAGGAAGCGGGACATGCCT+TGG 0.504747 5:+83234226 MsaT029919.1:CDS
CCTGCAACTGGGACAGGGAG+AGG 0.505005 5:+83235458 MsaT029919.1:CDS
CCCGCTTCCTCTTTCGAACA+CGG 0.505687 5:-83234215 None:intergenic
GAGCATTTGTTTCTGCTGCT+CGG 0.506865 5:-83235110 None:intergenic
TTGTTGTTGGGAAGAGATGG+TGG 0.508940 5:+83233888 MsaT029919.1:CDS
TGATCTCCTCCTCCCACCAT+CGG 0.509489 5:-83233650 None:intergenic
ATGGACTGCTGCTGCTGTTG+CGG 0.511630 5:-83236731 None:intergenic
TGTGTCCTACAACTCTGAAA+AGG 0.513066 5:+83235878 MsaT029919.1:CDS
CTTCGAGTGGGAGAAAGTCC+GGG 0.514429 5:+83235620 MsaT029919.1:CDS
ATGATCAGAGCAGTAATTCA+AGG 0.514911 5:+83235530 MsaT029919.1:CDS
AATGTTTAGATCAGGAGGAA+AGG 0.515643 5:+83234730 MsaT029919.1:CDS
ACTGCATCAACTTGTGATAG+TGG 0.516807 5:-83235298 None:intergenic
GCACTTCCCGTGTTCGAAAG+AGG 0.517007 5:+83234208 MsaT029919.1:CDS
ATGACTCCTGCTGAAGGTAG+TGG 0.518218 5:-83234072 None:intergenic
AGCAGCGGTGAACGAGATCA+TGG 0.518531 5:+83234625 MsaT029919.1:CDS
CTTACCACCGATGCTCTTTG+CGG 0.518548 5:-83235722 None:intergenic
GTTGATTCAGCTTGTTATGT+TGG 0.519135 5:+83234821 MsaT029919.1:CDS
CCACAGTTGGTCTTGGAGGT+AGG 0.520273 5:-83236383 None:intergenic
CTCCTAAAGGAGCTCCTGTA+GGG 0.521497 5:-83236236 None:intergenic
GTCTGACTGCAAGCAGAGGG+TGG 0.523574 5:-83236150 None:intergenic
TTTGGATGATGAAGGAGAAT+GGG 0.528381 5:+83236590 MsaT029919.1:CDS
ATAGAAAGACCCAATCTGTA+TGG 0.528633 5:-83236013 None:intergenic
ATTGAGGAGCTGTTAGGAGA+AGG 0.529962 5:+83233683 MsaT029919.1:CDS
CCCGTGTTCGAAAGAGGAAG+CGG 0.531738 5:+83234214 MsaT029919.1:CDS
CTTGCATTTGCATGTCGTCA+TGG 0.532538 5:+83235171 MsaT029919.1:CDS
TGGTGTGTTTGGACCGATGG+TGG 0.533057 5:+83233637 MsaT029919.1:CDS
ACAAGGTTTGGTTGTTGTGA+AGG 0.533876 5:-83234921 None:intergenic
TCCAACAATAATATTCCTAT+GGG 0.533890 5:+83233776 MsaT029919.1:CDS
GTGGTTGTGAGTGTGAATTA+GGG 0.534335 5:-83234053 None:intergenic
TTCAGATATGGGTACCTATG+AGG 0.536657 5:+83234020 MsaT029919.1:CDS
GGCCATCAAACTGTTCTCAC+TGG 0.539156 5:-83233720 None:intergenic
ATAAGGATGGAATATGGTGG+TGG 0.539183 5:+83233599 None:intergenic
CCAGTGTAGACACTCCTCAA+TGG 0.539440 5:-83235034 None:intergenic
AAAAGGATATGCAGACAGCA+TGG 0.540222 5:+83235895 MsaT029919.1:CDS
CAAGATCCTCCTGCAGCTGA+TGG 0.540391 5:-83236305 None:intergenic
TTCTATAACAACCATGGAGA+TGG 0.540523 5:+83236105 MsaT029919.1:CDS
ATTTACCATTAGCACTAACA+TGG 0.540642 5:+83234678 MsaT029919.1:CDS
CTGACTGCAAGCAGAGGGTG+GGG 0.540860 5:-83236148 None:intergenic
TATTCCTATGGGAATGGGAG+AGG 0.541465 5:+83233787 MsaT029919.1:CDS
TTGGACATGTATTGTGATTG+TGG 0.541821 5:-83233758 None:intergenic
GAGATGGTGGATTGGTCCTA+GGG 0.543278 5:+83233901 MsaT029919.1:CDS
GAACGAGATCATGGAAGTGT+TGG 0.543913 5:+83234634 MsaT029919.1:CDS
TATCTGAATAAGGACGTTGT+TGG 0.547376 5:-83234005 None:intergenic
CTGCAACTGGGACAGGGAGA+GGG 0.548598 5:+83235459 MsaT029919.1:CDS
TTGTTGTTCCAGGCCACAGT+TGG 0.548688 5:-83236396 None:intergenic
CGGTCATCTTCTTCTTCGAG+TGG 0.549619 5:+83235607 MsaT029919.1:CDS
AGGTGAATTGATCATGATCA+TGG 0.550802 5:-83235231 None:intergenic
ACTATTTGTTGTTGTTGGGA+AGG 0.551569 5:-83235251 None:intergenic
GATTCTGTTCAAGGTGCAGA+AGG 0.554163 5:+83235988 MsaT029919.1:CDS
CCGCTTCCTCTTTCGAACAC+GGG 0.554245 5:-83234214 None:intergenic
AAAGTGTTTGGAAGATTGAG+AGG 0.557783 5:-83236708 None:intergenic
TTTCTGTCATCACAACATGA+TGG 0.558281 5:-83236212 None:intergenic
CCTCCTAAAGGAGCTCCTGT+AGG 0.559089 5:-83236237 None:intergenic
TTGTGGACGGTAATTGATGA+GGG 0.559554 5:-83234278 None:intergenic
CTGCGGTTGCCATTCCATTG+AGG 0.560087 5:+83235020 MsaT029919.1:CDS
TCATCTTTCTAATGCCCTTG+AGG 0.560107 5:+83234306 MsaT029919.1:CDS
AATCATGATGATCAGGAAAG+TGG 0.561221 5:+83233863 MsaT029919.1:CDS
CAGTTGCAGTGCTCAACTCT+GGG 0.561472 5:-83236044 None:intergenic
AGTGGTTCAGAAGCAGAAGA+AGG 0.562757 5:-83235280 None:intergenic
ATTGGTCCTAGGGCAAATCC+AGG 0.563242 5:+83233911 MsaT029919.1:CDS
TTTGGACCGATGGTGGGAGG+AGG 0.563373 5:+83233644 MsaT029919.1:CDS
ATCAGGTTGTGGTGTTCCAA+CGG 0.563996 5:+83234766 MsaT029919.1:CDS
ATCTGCAGCTTGAGATTGCA+AGG 0.564834 5:+83236526 MsaT029919.1:CDS
ATTCCTATGGGAATGGGAGA+GGG 0.564967 5:+83233788 MsaT029919.1:CDS
GTTGGGAAGAGATGGTGGAT+TGG 0.566034 5:+83233893 MsaT029919.1:CDS
AGCTTGTTATGTTGGTGACA+TGG 0.568906 5:+83234829 MsaT029919.1:CDS
CAACTGGGACAGGGAGAGGG+AGG 0.570094 5:+83235462 MsaT029919.1:CDS
TCACAACCACTACCTTCAGC+AGG 0.570985 5:+83234066 MsaT029919.1:CDS
GAAAGATTGGTGGTTGCTGT+TGG 0.572471 5:+83233953 MsaT029919.1:CDS
TATGATGGAGGCTCAAAACA+AGG 0.572944 5:+83235372 MsaT029919.1:CDS
GGTCATCTTCTTCTTCGAGT+GGG 0.573869 5:+83235608 MsaT029919.1:CDS
CTCAGTGAAAGAAAGATTGG+TGG 0.577192 5:+83233943 MsaT029919.1:CDS
CCAGGACTACCATCAGCTGC+AGG 0.577606 5:+83236296 MsaT029919.1:CDS
AGTGTTTGGAAGATTGAGAG+GGG 0.579554 5:-83236706 None:intergenic
ATACCTTCAAGAGCCTAAAG+AGG 0.579620 5:+83235420 MsaT029919.1:CDS
CCGTGTTCGAAAGAGGAAGC+GGG 0.580474 5:+83234215 MsaT029919.1:CDS
AGATCAAGCAGATATAATTG+AGG 0.581807 5:+83233667 MsaT029919.1:CDS
GGTGGTGGGTTAGTGGCGGA+CGG 0.585315 5:+83233614 MsaT029919.1:CDS
GCAACTGCTAATGGTGGTGA+TGG 0.588078 5:+83236060 MsaT029919.1:CDS
AAAGGATATGCAGACAGCAT+GGG 0.588531 5:+83235896 MsaT029919.1:CDS
AATGCATGATCACCTCCTAA+AGG 0.588804 5:-83236249 None:intergenic
AAGTGTTTGGAAGATTGAGA+GGG 0.588890 5:-83236707 None:intergenic
GACAGCATGGGATTACAAGA+TGG 0.591399 5:+83235908 MsaT029919.1:CDS
CACAACCTGCAACTGGGACA+GGG 0.591739 5:+83235453 MsaT029919.1:CDS
CAAGGTCACAACCTGCAACT+GGG 0.592649 5:+83235447 MsaT029919.1:CDS
AGCATGTAAGCCAAACATGT+TGG 0.595579 5:-83234999 None:intergenic
GTTGAAGCTTCTTCAAAGAG+TGG 0.596844 5:-83235957 None:intergenic
GGTTTAGCTTGCAAGCAATG+TGG 0.599133 5:+83236493 MsaT029919.1:CDS
TAGTAACTATTCCATCTCCA+TGG 0.600448 5:-83236116 None:intergenic
GTGTTTGGACCGATGGTGGG+AGG 0.600770 5:+83233641 MsaT029919.1:CDS
GTAGACACTCCTCAATGGAA+TGG 0.601343 5:-83235029 None:intergenic
GGTGGGTTAGTGGCGGACGG+TGG 0.601586 5:+83233617 MsaT029919.1:CDS
GATGCTGGAGAAGAATCCCC+CGG 0.602225 5:+83235571 MsaT029919.1:CDS
GGAGGAAAGGGAAGTAGTGG+TGG 0.603333 5:+83234743 MsaT029919.1:CDS
GCTGATGCCGCGGATACTCG+TGG 0.604812 5:-83234153 None:intergenic
TTCTAACAAACATACCTCAA+GGG 0.607156 5:-83234320 None:intergenic
GTTGTGGACGGTAATTGATG+AGG 0.607762 5:-83234279 None:intergenic
TTAGAAAGATGATCAAGTTG+TGG 0.609239 5:-83234295 None:intergenic
GTGATGACAGAAAACCCTAC+AGG 0.609904 5:+83236222 MsaT029919.1:CDS
CCTACAGGAGCTCCTTTAGG+AGG 0.610151 5:+83236237 MsaT029919.1:CDS
TGGATATTCAGATTTGCTGA+AGG 0.610356 5:-83234963 None:intergenic
ATGATGGAGGCTCAAAACAA+GGG 0.610640 5:+83235373 MsaT029919.1:CDS
AAGGGGTGCTTTCAGAGTGA+AGG 0.613826 5:+83236446 MsaT029919.1:CDS
AGTGTTGTAAGTGTAGATGC+TGG 0.614142 5:+83235556 MsaT029919.1:CDS
GAGGCTCAAAACAAGGGGAA+AGG 0.614470 5:+83235379 MsaT029919.1:CDS
TAAGGATGGAATATGGTGGT+GGG 0.614914 5:+83233600 None:intergenic
AGCTAAGCTAGCTAGGAGGA+TGG 0.616196 5:-83236750 None:intergenic
TCTCCCTCTCCCATTCCCAT+AGG 0.616873 5:-83233791 None:intergenic
TGATCAGAGCAGTAATTCAA+GGG 0.617193 5:+83235531 MsaT029919.1:CDS
AAAGACGCCGCAAAGAGCAT+CGG 0.619326 5:+83235715 MsaT029919.1:CDS
GACGCCGCAAAGAGCATCGG+TGG 0.619514 5:+83235718 MsaT029919.1:CDS
CGGGGACAAGCGAAGAACCA+AGG 0.621785 5:+83235639 MsaT029919.1:CDS
TTTACCATTAGCACTAACAT+GGG 0.624845 5:+83234679 MsaT029919.1:CDS
ATATGGTGGTGGGTTAGTGG+CGG 0.626678 5:+83233610 MsaT029919.1:CDS
AGCAGCTTCTATAACAACCA+TGG 0.627549 5:+83236099 MsaT029919.1:CDS
CTTATAAGGATGGAATATGG+TGG 0.628016 5:+83233596 None:intergenic
CACCAATCTTTCTTTCACTG+AGG 0.629391 5:-83233942 None:intergenic
TGGGTCTGACTGCAAGCAGA+GGG 0.631048 5:-83236153 None:intergenic
TTGGATTGCACATATGATGG+AGG 0.631670 5:+83235360 MsaT029919.1:CDS
CCGACGACCACAAGCACCGG+GGG 0.633762 5:-83235587 None:intergenic
CAGATGATGACTCCTGCTGA+AGG 0.634429 5:-83234078 None:intergenic
AAAGATGATCAAGTTGTGGA+CGG 0.635159 5:-83234291 None:intergenic
TTTAGCTTGCAAGCAATGTG+GGG 0.637811 5:+83236495 MsaT029919.1:CDS
ATGGGTCTGACTGCAAGCAG+AGG 0.638448 5:-83236154 None:intergenic
TGAAGAGTTATATGAAGCAG+CGG 0.638858 5:+83234610 MsaT029919.1:CDS
TGCTTACAACAACAAGGAGG+AGG 0.639389 5:+83234707 MsaT029919.1:CDS
ATGTTGGCATGGTGAGCAAG+TGG 0.643266 5:-83234983 None:intergenic
TGTCACGACAATCTTTAGGA+AGG 0.643452 5:-83235087 None:intergenic
TTGTGGCGTAGTTTGCTGCA+TGG 0.643506 5:-83233741 None:intergenic
TTAGAAGCCACGAGTATCCG+CGG 0.645666 5:+83234146 MsaT029919.1:CDS
GATCATGGAAGTGTTGGCGT+CGG 0.648025 5:+83234640 MsaT029919.1:CDS
GTAAGCCAAACATGTTGGCA+TGG 0.651304 5:-83234994 None:intergenic
TGATGGAGGCTCAAAACAAG+GGG 0.652894 5:+83235374 MsaT029919.1:CDS
CATGTTTGGCTTACATGCTG+CGG 0.654543 5:+83235003 MsaT029919.1:CDS
AGATATGGGTACCTATGAGG+AGG 0.656494 5:+83234023 MsaT029919.1:CDS
CCATTGAGGAGTGTCTACAC+TGG 0.656873 5:+83235034 MsaT029919.1:CDS
CCTACCTCCAAGACCAACTG+TGG 0.660573 5:+83236383 MsaT029919.1:CDS
GGACTACCATCAGCTGCAGG+AGG 0.663379 5:+83236299 MsaT029919.1:CDS
TTCGAGTGGGAGAAAGTCCG+GGG 0.664567 5:+83235621 MsaT029919.1:CDS
TATGATGAGTTGCATATCAA+CGG 0.673142 5:+83234799 MsaT029919.1:CDS
TCATCAACACTATTAGAAAG+GGG 0.674535 5:+83236429 MsaT029919.1:CDS
GCTCCTTGCTTACAACAACA+AGG 0.679715 5:+83234701 MsaT029919.1:CDS
TGTAAGCTAAGCTAGCTAGG+AGG 0.679974 5:-83236754 None:intergenic
TTGAAGGTATTCCAATGACA+CGG 0.680528 5:-83235407 None:intergenic
GTAATATCAATAGCAAAACA+AGG 0.681741 5:-83234938 None:intergenic
AGCACTGCAACTGCTAATGG+TGG 0.696840 5:+83236054 MsaT029919.1:CDS
TAACAAACTCGATAACACCA+AGG 0.721377 5:-83234243 None:intergenic
ACCGACGACCACAAGCACCG+GGG 0.726050 5:-83235588 None:intergenic
CCTTGCTTACAACAACAAGG+AGG 0.765655 5:+83234704 MsaT029919.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 83233605 83236761 83233605 ID=MsaG029919
Chr5 mRNA 83233605 83236761 83233605 ID=MsaT029919.1;Parent=MsaG029919
Chr5 exon 83233605 83234327 83233605 ID=MsaT029919.1.exon1;Parent=MsaT029919.1
Chr5 CDS 83233605 83234327 83233605 ID=cds.MsaT029919.1;Parent=MsaT029919.1
Chr5 exon 83234427 83234477 83234427 ID=MsaT029919.1.exon2;Parent=MsaT029919.1
Chr5 CDS 83234427 83234477 83234427 ID=cds.MsaT029919.1;Parent=MsaT029919.1
Chr5 exon 83234605 83235739 83234605 ID=MsaT029919.1.exon3;Parent=MsaT029919.1
Chr5 CDS 83234605 83235739 83234605 ID=cds.MsaT029919.1;Parent=MsaT029919.1
Chr5 exon 83235878 83236761 83235878 ID=MsaT029919.1.exon4;Parent=MsaT029919.1
Chr5 CDS 83235878 83236761 83235878 ID=cds.MsaT029919.1;Parent=MsaT029919.1
Gene Sequence

>MsaT029919.1

ATGGAATATGGTGGTGGGTTAGTGGCGGACGGTGGTGTGTTTGGACCGATGGTGGGAGGAGGAGATCAAGCAGATATAATTGAGGAGCTGTTAGGAGAAGGTTGCTGGATTGAAGCCAGTGAGAACAGTTTGATGGCCATGCAGCAAACTACGCCACAATCACAATACATGTCCAACAATAATATTCCTATGGGAATGGGAGAGGGAGATCACTTCAATCATCATCATCATCAAATGGAATGCACTGCTCCAGCAGCAAATCATGATGATCAGGAAAGTGGTTTTGTTGTTGGGAAGAGATGGTGGATTGGTCCTAGGGCAAATCCAGGTCCAACAACCTCAGTGAAAGAAAGATTGGTGGTTGCTGTTGGTTACTTAAAAGAGTACACAAAGAACTCATCCAACAACGTCCTTATTCAGATATGGGTACCTATGAGGAGGAGAACAGCCCTAATTCACACTCACAACCACTACCTTCAGCAGGAGTCATCATCTGCACCTGTTTCTGTGAATCCAAACATGAACGTTCATGTTCGTTTCTTTAGAAGCCACGAGTATCCGCGGCATCAGCAGCAACAGCAGCAGCAATATGGATCTCTTCTAGCACTTCCCGTGTTCGAAAGAGGAAGCGGGACATGCCTTGGTGTTATCGAGTTTGTTATCTCCAATCAAACCCTCATCAATTACCGTCCACAACTTGATCATCTTTCTAATGCCCTTGAGGCTGTTGATTTTAGAAGTAGTCACAACATGAATATCCCACAAGCAGTAAAGGTATTTGAAGAGTTATATGAAGCAGCGGTGAACGAGATCATGGAAGTGTTGGCGTCGGTGTGTAAGACGCACAATTTACCATTAGCACTAACATGGGCTCCTTGCTTACAACAACAAGGAGGAGGAATGTTTAGATCAGGAGGAAAGGGAAGTAGTGGTGGATCAGGTTGTGGTGTTCCAACGGATCAGATGAGTATGATGAGTTGCATATCAACGGTTGATTCAGCTTGTTATGTTGGTGACATGGATGTATTGGGATTCCAAGAAGCGTGCAGTGAGTATCACCTTTTTAATGGACAAGGAATAGTAGGAACAGCCTTCACAACAACCAAACCTTGTTTTGCTATTGATATTACTGCCTTCAGCAAATCTGAATATCCACTTGCTCACCATGCCAACATGTTTGGCTTACATGCTGCGGTTGCCATTCCATTGAGGAGTGTCTACACTGGATCTGCTGCTGATTTTGTTTTGGAGTTTTTCCTTCCTAAAGATTGTCGTGACACCGAGCAGCAGAAACAAATGCTCAACTCATTGTCTCTTGTTGTTCAACAAGCTTGTAGGAGCTTGCATTTGCATGTCGTCATGGACGATAATAATATGAATGATAATAATTCTTCAGCTGACCATGATCATGATCAATTCACCTTCCCAACAACAACAAATAGTTACATGCCTTCTTCTGCTTCTGAACCACTATCACAAGTTGATGCAGTTTCAGGTTGTTCAACCAAAGACACTTCATCATCATGTTCTTGGATTGCACATATGATGGAGGCTCAAAACAAGGGGAAAGGCGTCTCCGTGTCATTGGAATACCTTCAAGAGCCTAAAGAGGAATTCAAGGTCACAACCTGCAACTGGGACAGGGAGAGGGAGGACAATGTCTTTTCAGAATTCGGCCAAGTACTGCAGCAGCAGCAGCATGATCAGAGCAGTAATTCAAGGGCAAGTGTTGTAAGTGTAGATGCTGGAGAAGAATCCCCCGGTGCTTGTGGTCGTCGGTCATCTTCTTCTTCGAGTGGGAGAAAGTCCGGGGACAAGCGAAGAACCAAGGCAGAGAAGACTATAAGCTTGCCGGTTCTGAGACAATACTTTGCCGGAAGCCTAAAAGACGCCGCAAAGAGCATCGGTGTGTGTCCTACAACTCTGAAAAGGATATGCAGACAGCATGGGATTACAAGATGGCCTTCAAGAAAAATAAAGAAGGTGGGCCACTCTTTGAAGAAGCTTCAACTTGTGATTGATTCTGTTCAAGGTGCAGAAGGTGCCATACAGATTGGGTCTTTCTATGCCAGCTTCCCAGAGTTGAGCACTGCAACTGCTAATGGTGGTGATGGTAATGATCACAATAACAGCAGCTTCTATAACAACCATGGAGATGGAATAGTTACTAGTTTGAAATCCCCACCCTCTGCTTGCAGTCAGACCCATGCAGGAAACAAATTACCTATGACTACTCCCATTAACCATCATGTTGTGATGACAGAAAACCCTACAGGAGCTCCTTTAGGAGGTGATCATGCATTGATGCATGCATCTAATATTAATATCCAGGACTACCATCAGCTGCAGGAGGATCTTGATACTAAGCAATTACTGCTACATTTCAACAACAACAACAGCAACATCAATCAAATCCTACCTCCAAGACCAACTGTGGCCTGGAACAACAATAATTCTTCATCATCAACACTATTAGAAAGGGGTGCTTTCAGAGTGAAGGCAACTTTCGCGGATGAAAAAATCAGGTTTAGCTTGCAAGCAATGTGGGGATTCAGAGATCTGCAGCTTGAGATTGCAAGGCGATTTAACCTAACCGATATGAACAACTTGGTTCTAAAATATTTGGATGATGAAGGAGAATGGGTTGTGTTATCATGTGATGCTGATCTTGAAGAGTGTAAAGACTTGCACACATCATCTCACACACGTACCATTAGACTCTCTCTTTTTCAAGCTTCCCCTCTCAATCTTCCAAACACTTTCCGCAACAGCAGCAGCAGTCCATCCTCCTAG

Protein sequence

>MsaT029919.1

MEYGGGLVADGGVFGPMVGGGDQADIIEELLGEGCWIEASENSLMAMQQTTPQSQYMSNNNIPMGMGEGDHFNHHHHQMECTAPAANHDDQESGFVVGKRWWIGPRANPGPTTSVKERLVVAVGYLKEYTKNSSNNVLIQIWVPMRRRTALIHTHNHYLQQESSSAPVSVNPNMNVHVRFFRSHEYPRHQQQQQQQYGSLLALPVFERGSGTCLGVIEFVISNQTLINYRPQLDHLSNALEAVDFRSSHNMNIPQAVKVFEELYEAAVNEIMEVLASVCKTHNLPLALTWAPCLQQQGGGMFRSGGKGSSGGSGCGVPTDQMSMMSCISTVDSACYVGDMDVLGFQEACSEYHLFNGQGIVGTAFTTTKPCFAIDITAFSKSEYPLAHHANMFGLHAAVAIPLRSVYTGSAADFVLEFFLPKDCRDTEQQKQMLNSLSLVVQQACRSLHLHVVMDDNNMNDNNSSADHDHDQFTFPTTTNSYMPSSASEPLSQVDAVSGCSTKDTSSSCSWIAHMMEAQNKGKGVSVSLEYLQEPKEEFKVTTCNWDREREDNVFSEFGQVLQQQQHDQSSNSRASVVSVDAGEESPGACGRRSSSSSSGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSTATANGGDGNDHNNSSFYNNHGDGIVTSLKSPPSACSQTHAGNKLPMTTPINHHVVMTENPTGAPLGGDHALMHASNINIQDYHQLQEDLDTKQLLLHFNNNNSNINQILPPRPTVAWNNNNSSSSTLLERGAFRVKATFADEKIRFSLQAMWGFRDLQLEIARRFNLTDMNNLVLKYLDDEGEWVVLSCDADLEECKDLHTSSHTRTIRLSLFQASPLNLPNTFRNSSSSPSS*