AlfalfaGEDB | MsaG029950

M. sativa ssp. caerulea / MsaG029950

KEGG: K14400
GO: GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029950	sp\|Q0WPF2\|PCFS4_ARATH	40.275	509	211	14	33	473	306	789	2.32e-97	313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029950	tr\|A0A2K3PQM1\|A0A2K3PQM1_TRIPR	64.906	530	93	13	15	474	250	756	0.0	627

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TFs/TRs:

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Gene ID	Type	Classification
MsaG029950	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000117	MsaG029950	0.859402	8.312113e-63	6.317346e-60
MsaG000128	MsaG029950	0.812872	5.864072e-51	1.074639e-48
MsaG000236	MsaG029950	0.810528	1.886702e-50	3.263717e-48
MsaG000287	MsaG029950	0.810719	1.715868e-50	2.982010e-48
MsaG000308	MsaG029950	0.846907	3.047699e-59	1.487724e-56
MsaG000352	MsaG029950	0.807173	9.767981e-50	1.558438e-47
MsaG000359	MsaG029950	0.807764	7.326910e-50	1.185620e-47
MsaG000410	MsaG029950	0.827230	3.129683e-54	8.375574e-52
MsaG000450	MsaG029950	0.843577	2.401242e-58	1.050329e-55
MsaG000458	MsaG029950	0.814032	3.269075e-51	6.167225e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029950	MtrunA17_Chr6g0452881	66.168	535	81	12	15	474	304	813	0.0	622
MsaG029950	MtrunA17_Chr6g0452891	78.077	260	13	4	216	474	1	217	1.26e-138	397
MsaG029950	MtrunA17_Chr4g0037071	74.634	205	30	1	270	474	1	183	1.32e-94	285
MsaG029950	MtrunA17_Chr4g0037081	55.090	167	31	5	6	130	15	179	9.71e-44	152
MsaG029950	MtrunA17_Chr1g0179281	31.765	255	129	7	263	474	756	1008	4.02e-33	133
MsaG029950	MtrunA17_Chr7g0265781	26.448	397	227	11	129	474	633	1015	1.99e-31	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG029950	AT4G04885.1	40.275	509	211	14	33	473	306	789	2.35e-98	313
MsaG029950	AT1G66500.1	35.882	340	173	15	159	472	66	386	4.12e-49	174
MsaG029950	AT5G43620.1	36.170	282	132	10	215	472	123	380	1.54e-48	172
MsaG029950	AT2G36480.2	32.044	181	110	4	292	472	775	942	9.39e-22	99.4
MsaG029950	AT2G36480.1	32.044	181	110	4	292	472	775	942	9.39e-22	99.4

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Find 139 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATGAAGAATTTGT+TGG	0.474608	6:+224449	None:intergenic
AAAGAAAGAAGACGAAGAGT+TGG	0.510498	6:-223160	MsaT029950.1:CDS
AAAGGAAGAAGATGCTTGCC+AGG	0.480340	6:-224481	None:intergenic
AAAGTGAATTGCGACACTGC+TGG	0.601468	6:+223885	None:intergenic
AAAGTTGCTGGCGAAACTGG+TGG	0.598178	6:+224161	None:intergenic
AAATTAGAATATCCTACAGT+TGG	0.553132	6:+223699	None:intergenic
AACAGGTCGTGCATTTGGCA+GGG	0.540179	6:+223848	None:intergenic
AAGAGTTGTTTCCGATTCTT+TGG	0.325210	6:+223805	None:intergenic
AATACTACCACTGTTAGTCA+TGG	0.626258	6:-224044	MsaT029950.1:CDS
AATATCCTACAGTTGGCTGT+TGG	0.562656	6:+223706	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	222972	224492	222972	ID=MsaG029950
Chr6	mRNA	222972	224492	222972	ID=MsaT029950.1;Parent=MsaG029950
Chr6	exon	222972	223478	222972	ID=MsaT029950.1.exon2;Parent=MsaT029950.1
Chr6	CDS	222972	223478	222972	ID=cds.MsaT029950.1;Parent=MsaT029950.1
Chr6	exon	223575	224492	223575	ID=MsaT029950.1.exon1;Parent=MsaT029950.1
Chr6	CDS	223575	224492	223575	ID=cds.MsaT029950.1;Parent=MsaT029950.1

Gene Sequence

>MsaT029950.1

ATGCTTGCCAGGAGAGAAACACCAACAAATTCTTCATCAGTTTTCTCACACTTTCCGCGAAAAAGATGTTTTGATGAGTTCAGCTATCGCAGCAACGGACAACCTCGTCAAAATCCAATAGCTCTAATTGATGCCTATGGTAGTGCGAAAAGACAAGAAACTTCATGGAAGAATACCGAAGAGGAGGAGTTCAATTGGGAAGATATGATTCCGACACCAGCAACTGGGAAGCCCGCTGCTATTGCAGCAAATGCAACTTCTTCAGTGTCAAGGGTGTTTCCTGGTCTCAATTCTAATACTGAGTACCATCCACCAGTTTCGCCAGCAACTTTAGAAACGAGGTCCTCCGTAAATGTGCATGCTCCACGCCCTCCTATATATCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCTAATACTACCACTGTTAGTCATGGTCTAATTAATAGACCTATTCCTGTGCATGAACATGGTGTTGAGAACAATGGTATCAGTAAAAGAAACCTGCATCAGTTGCCTAACTCGCCAACCAGTGGACAAACACCGCCTTTCCAGTTTTTTCCATCTCAGAATCCAGCAGTGTCGCAATTCACTTTGCCAAGACATGGCCCCCTGCCAAATGCACGACCTGTTATGCCACTTCCTATGCCAGACCAAAGAATCGGAAACAACTCTTTCCGACCTTTACCTCCAGCTGGCCATGCTCTACCCCAGATTCTACCTCATCCGAATCCTGGTCCTAATGTGTCAAGCCAACAGCCAACTGTAGGATATTCTAATTTGATTAGTTCACTCGTGGCCCAAGGTGTTATCTCATTGGCTAATCAAGCCCCTGCGGAGGTAACTAAATTGGCTAATCAAAGCCCTGCGGAGGTAACTAAATCAGCTAATCAAGCCCCTGCGGAGGATTTTATTGGCCCTGAGTTTGATCCAAATATTCTCAAGGTTCGTCATGAATCTGTAATCCGTGCCTTATATGGTGATTTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCAAAGATGAGCACAGCAGTCACATGGATTGGCATGTAACTAAGAATCGTATGTCCAAAAACAATAAGCAGAAACCCTCTCGCAAGTGGTTTGTGAGTGAGACGATGTGGCTTAAAGGTGCCGAGGCATTGGGAGTCAAGTCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAGGAAAAGAAAGAAGACGAAGAGTTGGCAGTTCCTGCCGACGAGGATCAAAATACATGTGCATTATGTGGAGAACCTTTTGACGTGTTTTACAGTGATGAAACGGAGGATTGGATGAGTAGAGAAGCTGTATACCTCAATGCACCTAATGGAATAACAACAGGCATGGACAGGTCGCAGTTAGGCCCCATTATTCATGCTAAATGCAGATCTTAA

Protein sequence

>MsaT029950.1

MLARRETPTNSSSVFSHFPRKRCFDEFSYRSNGQPRQNPIALIDAYGSAKRQETSWKNTEEEEFNWEDMIPTPATGKPAAIAANATSSVSRVFPGLNSNTEYHPPVSPATLETRSSVNVHAPRPPIYPSKNPVRNPFESINANTTTVSHGLINRPIPVHEHGVENNGISKRNLHQLPNSPTSGQTPPFQFFPSQNPAVSQFTLPRHGPLPNARPVMPLPMPDQRIGNNSFRPLPPAGHALPQILPHPNPGPNVSSQQPTVGYSNLISSLVAQGVISLANQAPAEVTKLANQSPAEVTKSANQAPAEDFIGPEFDPNILKVRHESVIRALYGDFPRQCTTCGLRFKSKDEHSSHMDWHVTKNRMSKNNKQKPSRKWFVSETMWLKGAEALGVKSAPGFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFDVFYSDETEDWMSREAVYLNAPNGITTGMDRSQLGPIIHAKCRS*