AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG029980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG029980 MtrunA17_Chr6g0452661 55.000 160 50 1 1 138 37 196 4.97e-53 169
MsaG029980 MtrunA17_Chr6g0452691 62.000 100 38 0 2 101 38 137 5.25e-34 118
MsaG029980 MtrunA17_Chr5g0439111 61.261 111 36 2 1 106 37 145 3.34e-33 117
MsaG029980 MtrunA17_Chr6g0452671 50.435 115 56 1 1 115 39 152 5.29e-32 113
MsaG029980 MtrunA17_Chr4g0055441 47.458 118 52 3 1 118 30 137 1.96e-25 95.5
MsaG029980 MtrunA17_Chr6g0449311 48.864 88 42 1 1 88 1 85 2.29e-21 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 22 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAAATTCCAAACAATTA+TGG 0.241649 6:+581341 MsaT029980.1:CDS
CGTGCAAAATTCCCAGTAAA+TGG 0.253942 6:+581173 MsaT029980.1:CDS
CGATGTCATAAAAGAAAGTT+TGG 0.353692 6:+581460 MsaT029980.1:CDS
ACATCAAGACATCCATTTAC+TGG 0.359036 6:-581185 None:intergenic
GGAATTTGAGAACAAGTATA+AGG 0.360419 6:-581329 None:intergenic
ATGATATCACCATAATTGTT+TGG 0.382319 6:-581350 None:intergenic
GGCGACGCTCATCGTTTGTT+TGG 0.384725 6:+581059 MsaT029980.1:CDS
TTATTCATAGGATTTATATT+CGG 0.394727 6:-581410 None:intergenic
GATGTTATTAAGCTATATGA+AGG 0.481386 6:+581203 MsaT029980.1:CDS
CTATGAATAAAACGAGGGTT+AGG 0.484946 6:+581423 MsaT029980.1:CDS
TTTCAACATAGATGACCTCA+TGG 0.512239 6:+581496 MsaT029980.1:CDS
AAAGATACTAAACGAAATCA+AGG 0.515917 6:+581097 MsaT029980.1:CDS
TGGATGATGTTGACTTCAGC+AGG 0.521140 6:+581516 MsaT029980.1:CDS
CATCAAGACATCCATTTACT+GGG 0.528514 6:-581184 None:intergenic
AGAGTATTATTAACATCATG+AGG 0.545135 6:-581374 None:intergenic
AGAACAAGTATAAGGTAGTG+AGG 0.559305 6:-581321 None:intergenic
AAATCCTATGAATAAAACGA+GGG 0.664971 6:+581418 MsaT029980.1:CDS
GAGTATTATTAACATCATGA+GGG 0.669438 6:-581373 None:intergenic
CTAAACGAAATCAAGGACAA+AGG 0.675964 6:+581104 MsaT029980.1:CDS
TAAATCCTATGAATAAAACG+AGG 0.704423 6:+581417 MsaT029980.1:CDS
AAAACGAGGGTTAGGAACAG+CGG 0.706009 6:+581431 MsaT029980.1:CDS
TGAAGTCAACATCATCCATG+AGG 0.719122 6:-581511 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr6 gene 581053 582891 581053 ID=MsaG029980
Chr6 mRNA 581053 582891 581053 ID=MsaT029980.1;Parent=MsaG029980
Chr6 exon 581053 581537 581053 ID=MsaT029980.1.exon1;Parent=MsaT029980.1
Chr6 CDS 581053 581537 581053 ID=cds.MsaT029980.1;Parent=MsaT029980.1
Chr6 exon 582873 582891 582873 ID=MsaT029980.1.exon2;Parent=MsaT029980.1
Chr6 CDS 582873 582891 582873 ID=cds.MsaT029980.1;Parent=MsaT029980.1
Gene Sequence

>MsaT029980.1

ATGTTTGGCGACGCTCATCGTTTGTTTGGTGTTTCCAACATACAAAAGATACTAAACGAAATCAAGGACAAAGGTAAAAGAGATCAAGCTATGACATCAATTATTGTTGAGTCGAATATTCGTGCAAAATTCCCAGTAAATGGATGTCTTGATGTTATTAAGCTATATGAAGGTATGTTACTTGAGTCTTATGCTGAGTTAAATCTAACAAATATGTTACTAGCTTATTGTAAGCGAAACAATCATTCACAACAACAAAATCTTCATTCCTCACTACCTTATACTTGTTCTCAAATTCCAAACAATTATGGTGATATCATCCCTCATGATGTTAATAATACTCTACTTGATACAAAGCCGAATATAAATCCTATGAATAAAACGAGGGTTAGGAACAGCGGTGATGTCGATGTCATAAAAGAAAGTTTGGATGATGATGTTCTTTTCAACATAGATGACCTCATGGATGATGTTGACTTCAGCAGTTTTGAATCAAACCTATAG

Protein sequence

>MsaT029980.1

MFGDAHRLFGVSNIQKILNEIKDKGKRDQAMTSIIVESNIRAKFPVNGCLDVIKLYEGMLLESYAELNLTNMLLAYCKRNNHSQQQNLHSSLPYTCSQIPNNYGDIIPHDVNNTLLDTKPNINPMNKTRVRNSGDVDVIKESLDDDVLFNIDDLMDDVDFSSFESNL*