AlfalfaGEDB | MsaG030022

M. sativa ssp. caerulea / MsaG030022

KEGG: -
GO: GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900150 GO:1900424 GO:1900425
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030022	sp\|Q9LSI9\|BIR2_ARATH	61.960	602	214	7	5	600	11	603	0.0	758

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030022	tr\|G7KK02\|G7KK02_MEDTR	98.339	602	10	0	1	602	1	602	0.0	1222

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030022	MtrunA17_Chr6g0452221	98.339	602	10	0	1	602	1	602	0.0	1222
MsaG030022	MtrunA17_Chr7g0249841	48.155	569	282	8	26	588	30	591	0.0	526
MsaG030022	MtrunA17_Chr8g0337671	44.891	597	309	10	1	588	10	595	6.29e-171	499
MsaG030022	MtrunA17_Chr4g0049181	33.503	588	340	10	19	579	42	605	6.20e-98	311
MsaG030022	MtrunA17_Chr3g0129391	37.739	522	283	16	87	577	640	1150	8.57e-86	290
MsaG030022	MtrunA17_Chr3g0079661	35.458	502	300	10	99	580	697	1194	1.73e-81	278
MsaG030022	MtrunA17_Chr1g0203631	35.662	544	305	12	78	580	732	1271	2.39e-81	278
MsaG030022	MtrunA17_Chr1g0203631	38.739	111	65	3	78	188	409	516	1.01e-11	68.2
MsaG030022	MtrunA17_Chr1g0203631	33.133	166	81	4	52	188	508	672	1.84e-11	67.4
MsaG030022	MtrunA17_Chr1g0203631	30.052	193	104	4	20	189	405	589	2.51e-11	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030022	AT3G28450.1	61.960	602	214	7	5	600	11	603	0.0	758
MsaG030022	AT1G27190.1	61.446	581	211	7	26	598	25	600	0.0	701
MsaG030022	AT1G69990.1	57.095	592	237	10	15	599	8	589	0.0	673
MsaG030022	AT5G48380.1	43.890	581	301	10	25	588	28	600	1.17e-164	484
MsaG030022	AT5G07280.1	37.024	551	289	13	74	577	653	1192	2.34e-87	295
MsaG030022	AT5G07280.1	35.526	152	74	5	60	189	55	204	1.96e-12	71.2
MsaG030022	AT5G07280.1	46.591	88	46	1	104	191	586	672	2.05e-11	67.8
MsaG030022	AT1G55610.1	34.709	533	312	12	99	601	640	1166	8.39e-85	288
MsaG030022	AT1G55610.1	37.931	145	70	7	78	206	256	396	1.85e-12	71.2
MsaG030022	AT1G55610.1	42.105	114	61	4	85	196	414	524	1.04e-11	68.6

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Find 144 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACAGATGAAACCAA+CGG	0.675193	6:+1403753	None:intergenic
AAAGGGGATGTGTATGGATT+CGG	0.399553	6:-1402470	MsaT030022.1:CDS
AAATTCAACAACAGAACCGT+TGG	0.562583	6:-1403769	MsaT030022.1:CDS
AACATCGACGAAGAATTTAA+AGG	0.331687	6:-1402398	MsaT030022.1:CDS
AACTAAGCCGGCTCATTCTC+TGG	0.402380	6:+1402128	None:intergenic
AAGGAACAGTGATGAAGACA+TGG	0.639152	6:+1403918	None:intergenic
AAGGAAGGGTATGTTGTTGG+CGG	0.528280	6:-1403142	MsaT030022.1:CDS
AAGTGGAAAAGGTAACGATG+AGG	0.682466	6:-1402306	MsaT030022.1:CDS
AATGGTTGCTTCTTTGAAAG+GGG	0.582636	6:-1402486	MsaT030022.1:CDS
ACAACACAATACCCCAACAA+AGG	0.664741	6:+1402836	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	1402130	1403938	1402130	ID=MsaG030022
Chr6	mRNA	1402130	1403938	1402130	ID=MsaT030022.1;Parent=MsaG030022
Chr6	exon	1402130	1403938	1402130	ID=MsaT030022.1.exon1;Parent=MsaT030022.1
Chr6	CDS	1402130	1403938	1402130	ID=cds.MsaT030022.1;Parent=MsaT030022.1

Gene Sequence

>MsaT030022.1

ATGTCTTCATCACTGTTCCTTCTCTTCTTCACAGTTTTCACTTTCTGGGTCACTTTATCTTCATCTCAAGTTGAAGAAGACAACGTAAGATGTCTTCAAGGTATTCAACAAAGCCTAGGAAACTCCGATAGTCAAATCTCTTCATGGAAATTCAACAACAGAACCGTTGGTTTCATCTGTGATTTTGTTGGTGTAACATGTTGGAATGTTAGAGAGAATCGTGTTTTGGGTTTGGAGCTGAAAAGCATGAAGCTTTCTGGTAAGATTCCTGAGTCTTTGAAGTATTGTGGTCAAAGTTTGCAAAGATTGGATCTTGGTTCAAATTCATTGAGTTCAGTGATTCCAACTCAGATCTGTGAATGGATGCCTTTTTTGGTAACTTTGGATTTATCTGGTAATAATTTGAATGGTGAAATTCCACATACTCTTGTGAATTGTACTTATTTGAATGAGTTAATGTTGGATAATAATCATTTAACTGGTAGTATACCTTATGAGATTACTAGTTTAACTAGGTTACATAAGTTTAGTGTTGCTAATAATCAATTAAGTGGTGATATACCATCTTTTTTTAATGGTTTTGATAAGGATGGTTTTGATGGGAATAGTGGTTTATGTGGTGGTCCACTTGGATCAAAGTGTGGTGGTATGAGTAAGAAGAATTTGGCTATTATTATTGCTGCTGGTGTTTTTGGTGCTGCTGGTTCTTTGTTGGCTGCTTTTGGATTGTGGTGGTGGTATCATTTGAGGTTAGGTGGGGAGAGGAGGAGGAGTAAGGAAGGGTATGTTGTTGGCGGGGTTGATGATTGGGCGGTGAGGTTGAGAGGTCATAAGCTTGCTCAAGTTAATCTTTTTCAGAAACCGATTGTTAAGGTGAAGCTTGGTGATTTGATGGCTGCGACGAATAATTTTAGTAATGAGAATGTTCTTATTACGACTAGGACGGGGGCGACTTATAGGGCGGATCTTCCAGATGGTTCGACGCTTGCAGTGAAGAGGTTGAGTAGTTGTAAGATTGGGGAGAAGCAGTTTCGGATGGAGATGAATCGGTTGGGACAGGTTAGGCATCCGAATTTGGCGCCTTTGTTGGGGTATTGTGTTGTGGAAGAGGAGAAGCTTTTGGTTTATAAGCATATGTCGAATGGAACGCTTTATTCGTTGTTGCATAAGAATAGTGGTGTGTTGGATTGGTTGATGAGGTTTAGGATTGGGTTGGGAGCGGCTAGGGGACTTGCGTGGTTGCATCATGGGTGTCATCCTCCGATTATACAACAGAATATTTGTTCGAATGTGATTCTTGTTGATGAAGAATTCGATGCTCGGATAATGGACTTTGGACTTGCCAGGCTTATGACTTCTGACGCCAATGGTAGTTTTGTGAACGGTGATTTGGGGGAACTCGGTTATATTGCTCCTGAGTATTCGAGTACAATGGTTGCTTCTTTGAAAGGGGATGTGTATGGATTCGGAGTTTTACTTTTGGAGTTGGTCACTGGGTGCAAACCTCTCGAGGTGAATAACATCGACGAAGAATTTAAAGGCAACTTGGTAGATTGGGTGAATATGCATTCAAGTTCTGGTAGACTCAAGGACTGCATCGATAGATCGATAAGTGGAAAAGGTAACGATGAGGAGATTCTGCAGTTTCTGAAAATCGCATCCAATTGTGTCATTGCTCGCGCAAAAGATAGGTGGTCTATGTACCAAGTTTATAATTCGTTGAAGGGCATTTCCAAAGACCACAGTTTCTCCGAACACGATGACGAATTTCCCTTGATCTTTGGTAAGCCAGAGAATGAGCCGGCTTAG

Protein sequence

>MsaT030022.1

MSSSLFLLFFTVFTFWVTLSSSQVEEDNVRCLQGIQQSLGNSDSQISSWKFNNRTVGFICDFVGVTCWNVRENRVLGLELKSMKLSGKIPESLKYCGQSLQRLDLGSNSLSSVIPTQICEWMPFLVTLDLSGNNLNGEIPHTLVNCTYLNELMLDNNHLTGSIPYEITSLTRLHKFSVANNQLSGDIPSFFNGFDKDGFDGNSGLCGGPLGSKCGGMSKKNLAIIIAAGVFGAAGSLLAAFGLWWWYHLRLGGERRRSKEGYVVGGVDDWAVRLRGHKLAQVNLFQKPIVKVKLGDLMAATNNFSNENVLITTRTGATYRADLPDGSTLAVKRLSSCKIGEKQFRMEMNRLGQVRHPNLAPLLGYCVVEEEKLLVYKHMSNGTLYSLLHKNSGVLDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEEFDARIMDFGLARLMTSDANGSFVNGDLGELGYIAPEYSSTMVASLKGDVYGFGVLLLELVTGCKPLEVNNIDEEFKGNLVDWVNMHSSSGRLKDCIDRSISGKGNDEEILQFLKIASNCVIARAKDRWSMYQVYNSLKGISKDHSFSEHDDEFPLIFGKPENEPA*