Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG030035 | XP_013450895.2 | 90.638 | 470 | 42 | 1 | 1 | 470 | 1 | 468 | 0.0 | 825 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG030035 | sp|Q9LFQ3|SNL2_ARATH | 54.701 | 468 | 158 | 8 | 2 | 420 | 14 | 476 | 1.70e-141 | 442 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG030035 | tr|A0A396HB94|A0A396HB94_MEDTR | 90.638 | 470 | 42 | 1 | 1 | 470 | 1 | 468 | 0.0 | 825 |
Gene ID | Type | Classification |
---|---|---|
MsaG030035 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG030035 | MtrunA17_Chr6g0452021 | 90.638 | 470 | 42 | 1 | 1 | 470 | 1 | 468 | 0.0 | 825 |
MsaG030035 | MtrunA17_Chr6g0452001 | 67.715 | 477 | 89 | 7 | 2 | 420 | 15 | 484 | 0.0 | 568 |
MsaG030035 | MtrunA17_Chr8g0364231 | 44.400 | 500 | 183 | 11 | 2 | 418 | 13 | 500 | 5.89e-104 | 338 |
MsaG030035 | MtrunA17_Chr5g0415031 | 41.551 | 503 | 192 | 14 | 2 | 420 | 14 | 498 | 4.12e-89 | 296 |
MsaG030035 | MtrunA17_Chr1g0206771 | 41.176 | 153 | 84 | 2 | 38 | 189 | 10 | 157 | 2.45e-27 | 108 |
MsaG030035 | MtrunA17_Chr1g0206781 | 51.648 | 91 | 44 | 0 | 35 | 125 | 3 | 93 | 1.52e-23 | 95.5 |
MsaG030035 | MtrunA17_Chr1g0205821 | 36.000 | 150 | 94 | 2 | 43 | 190 | 13 | 162 | 1.96e-23 | 97.1 |
MsaG030035 | MtrunA17_Chr1g0205821 | 45.833 | 72 | 39 | 0 | 44 | 115 | 100 | 171 | 1.59e-15 | 74.7 |
MsaG030035 | MtrunA17_Chr3g0077891 | 39.130 | 161 | 90 | 3 | 37 | 189 | 2 | 162 | 6.85e-23 | 95.5 |
MsaG030035 | MtrunA17_Chr3g0077891 | 50.667 | 75 | 36 | 1 | 37 | 110 | 93 | 167 | 1.77e-17 | 80.1 |
MsaG030035 | MtrunA17_Chr3g0077881 | 38.509 | 161 | 91 | 4 | 37 | 189 | 2 | 162 | 1.95e-22 | 94.4 |
MsaG030035 | MtrunA17_Chr3g0077881 | 45.333 | 75 | 40 | 1 | 37 | 110 | 93 | 167 | 6.78e-12 | 63.9 |
MsaG030035 | MtrunA17_Chr3g0077911 | 37.975 | 158 | 87 | 4 | 37 | 189 | 2 | 153 | 1.72e-21 | 90.9 |
MsaG030035 | MtrunA17_Chr3g0077911 | 57.534 | 73 | 30 | 1 | 37 | 108 | 84 | 156 | 6.50e-19 | 84.0 |
MsaG030035 | MtrunA17_Chr3g0077861 | 35.976 | 164 | 97 | 4 | 37 | 195 | 2 | 162 | 6.35e-21 | 89.7 |
MsaG030035 | MtrunA17_Chr3g0077941 | 37.059 | 170 | 99 | 4 | 37 | 198 | 2 | 171 | 1.74e-20 | 88.6 |
MsaG030035 | MtrunA17_Chr4g0075861 | 39.865 | 148 | 82 | 2 | 43 | 190 | 12 | 152 | 2.21e-20 | 92.8 |
MsaG030035 | MtrunA17_Chr4g0075861 | 34.839 | 155 | 96 | 3 | 38 | 190 | 84 | 235 | 1.46e-16 | 81.3 |
MsaG030035 | MtrunA17_Chr4g0075861 | 59.701 | 67 | 27 | 0 | 46 | 112 | 175 | 241 | 2.09e-16 | 80.9 |
MsaG030035 | MtrunA17_Chr4g0075971 | 38.514 | 148 | 84 | 2 | 43 | 190 | 12 | 152 | 1.47e-18 | 88.6 |
MsaG030035 | MtrunA17_Chr4g0075971 | 59.701 | 67 | 27 | 0 | 46 | 112 | 175 | 241 | 4.79e-16 | 80.9 |
MsaG030035 | MtrunA17_Chr4g0075971 | 33.766 | 154 | 99 | 2 | 38 | 190 | 84 | 235 | 5.62e-15 | 77.4 |
MsaG030035 | MtrunA17_Chr8g0364021 | 50.000 | 76 | 38 | 0 | 37 | 112 | 38 | 113 | 1.63e-18 | 84.7 |
MsaG030035 | MtrunA17_Chr1g0205811 | 48.837 | 86 | 43 | 1 | 43 | 127 | 14 | 99 | 2.41e-18 | 80.9 |
MsaG030035 | MtrunA17_Chr8g0362641 | 37.302 | 126 | 75 | 1 | 230 | 351 | 64 | 189 | 1.42e-17 | 82.8 |
MsaG030035 | MtrunA17_Chr8g0362641 | 38.298 | 94 | 58 | 0 | 273 | 366 | 192 | 285 | 4.57e-14 | 72.8 |
MsaG030035 | MtrunA17_Chr7g0218891 | 31.579 | 152 | 100 | 2 | 43 | 190 | 99 | 250 | 3.24e-17 | 81.6 |
MsaG030035 | MtrunA17_Chr7g0218891 | 30.539 | 167 | 110 | 3 | 44 | 204 | 14 | 180 | 3.36e-15 | 75.9 |
MsaG030035 | MtrunA17_Chr7g0218891 | 41.111 | 90 | 49 | 2 | 43 | 130 | 185 | 272 | 4.74e-12 | 66.2 |
MsaG030035 | MtrunA17_Chr1g0209201 | 35.338 | 133 | 78 | 2 | 43 | 175 | 16 | 140 | 3.56e-16 | 75.5 |
MsaG030035 | MtrunA17_Chr7g0218911 | 43.956 | 91 | 46 | 2 | 47 | 136 | 2 | 88 | 7.67e-16 | 73.9 |
MsaG030035 | MtrunA17_Chr1g0205801 | 41.860 | 86 | 49 | 1 | 43 | 127 | 12 | 97 | 1.41e-14 | 70.1 |
MsaG030035 | MtrunA17_Chr1g0205831 | 30.822 | 146 | 88 | 1 | 45 | 190 | 4 | 136 | 1.57e-14 | 71.6 |
MsaG030035 | MtrunA17_Chr1g0205831 | 41.791 | 67 | 39 | 0 | 46 | 112 | 76 | 142 | 8.69e-11 | 60.8 |
MsaG030035 | MtrunA17_Chr1g0205861 | 38.824 | 85 | 52 | 0 | 32 | 116 | 5 | 89 | 2.51e-14 | 69.3 |
MsaG030035 | MtrunA17_Chr2g0328701 | 40.404 | 99 | 52 | 2 | 43 | 141 | 29 | 120 | 2.30e-13 | 67.0 |
MsaG030035 | MtrunA17_Chr5g0415081 | 43.478 | 69 | 37 | 1 | 123 | 189 | 16 | 84 | 2.36e-11 | 60.1 |
MsaG030035 | MtrunA17_Chr7g0218901 | 41.818 | 55 | 32 | 0 | 135 | 189 | 1 | 55 | 3.72e-11 | 58.5 |
MsaG030035 | MtrunA17_Chr3g0077811 | 44.156 | 77 | 42 | 1 | 37 | 112 | 7 | 83 | 4.00e-11 | 60.5 |
MsaG030035 | MtrunA17_Chr7g0256011 | 42.105 | 76 | 44 | 0 | 32 | 107 | 5 | 80 | 4.88e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG030035 | AT5G15020.2 | 54.701 | 468 | 158 | 8 | 2 | 420 | 14 | 476 | 1.64e-142 | 442 |
MsaG030035 | AT5G15020.1 | 54.701 | 468 | 158 | 8 | 2 | 420 | 14 | 476 | 1.73e-142 | 442 |
MsaG030035 | AT3G01320.1 | 53.518 | 469 | 167 | 10 | 2 | 420 | 14 | 481 | 1.39e-134 | 421 |
MsaG030035 | AT3G01320.2 | 51.812 | 469 | 163 | 11 | 2 | 420 | 14 | 469 | 1.33e-127 | 402 |
MsaG030035 | AT1G24190.2 | 43.736 | 439 | 191 | 12 | 29 | 418 | 3 | 434 | 1.38e-96 | 317 |
MsaG030035 | AT1G24190.3 | 43.736 | 439 | 191 | 12 | 29 | 418 | 3 | 434 | 1.87e-96 | 317 |
MsaG030035 | AT1G24190.1 | 43.115 | 443 | 192 | 13 | 29 | 418 | 3 | 438 | 2.49e-93 | 308 |
MsaG030035 | AT1G70060.2 | 41.907 | 451 | 197 | 8 | 32 | 418 | 3 | 452 | 3.15e-89 | 297 |
MsaG030035 | AT1G70060.1 | 41.907 | 451 | 197 | 8 | 32 | 418 | 3 | 452 | 3.15e-89 | 297 |
MsaG030035 | AT1G10450.2 | 55.249 | 181 | 77 | 2 | 26 | 205 | 19 | 196 | 1.31e-52 | 191 |
MsaG030035 | AT1G10450.1 | 55.249 | 181 | 77 | 2 | 26 | 205 | 19 | 196 | 1.31e-52 | 191 |
MsaG030035 | AT1G10450.3 | 55.249 | 181 | 77 | 2 | 26 | 205 | 70 | 247 | 1.44e-52 | 191 |
MsaG030035 | AT1G24200.1 | 51.010 | 198 | 92 | 3 | 29 | 225 | 3 | 196 | 2.69e-52 | 175 |
MsaG030035 | AT1G59890.2 | 63.333 | 150 | 53 | 2 | 42 | 190 | 44 | 192 | 5.77e-52 | 189 |
MsaG030035 | AT1G59890.3 | 63.333 | 150 | 53 | 2 | 42 | 190 | 44 | 192 | 6.67e-52 | 189 |
MsaG030035 | AT1G59890.1 | 63.333 | 150 | 53 | 2 | 42 | 190 | 44 | 192 | 6.82e-52 | 189 |
MsaG030035 | AT1G59890.4 | 63.333 | 150 | 53 | 2 | 42 | 190 | 44 | 192 | 6.84e-52 | 189 |
MsaG030035 | AT1G70030.1 | 50.649 | 154 | 74 | 2 | 37 | 189 | 5 | 157 | 5.73e-44 | 152 |
MsaG030035 | AT1G70030.2 | 41.558 | 154 | 56 | 2 | 37 | 189 | 16 | 136 | 4.21e-27 | 106 |
MsaG030035 | AT5G15025.1 | 49.558 | 113 | 48 | 1 | 4 | 116 | 17 | 120 | 1.69e-26 | 103 |
MsaG030035 | AT5G35610.1 | 41.781 | 146 | 68 | 3 | 38 | 170 | 5 | 146 | 9.88e-26 | 103 |
MsaG030035 | AT1G24230.1 | 37.241 | 145 | 86 | 3 | 43 | 185 | 86 | 227 | 1.69e-25 | 105 |
MsaG030035 | AT1G24230.1 | 32.704 | 159 | 92 | 3 | 31 | 188 | 3 | 147 | 2.09e-18 | 85.1 |
MsaG030035 | AT1G70030.3 | 49.057 | 106 | 53 | 1 | 37 | 141 | 16 | 121 | 1.27e-24 | 99.0 |
MsaG030035 | AT1G23810.1 | 36.095 | 169 | 81 | 4 | 32 | 198 | 97 | 240 | 2.98e-22 | 95.9 |
MsaG030035 | AT1G24250.1 | 37.888 | 161 | 77 | 3 | 32 | 190 | 108 | 247 | 4.07e-22 | 95.9 |
MsaG030035 | AT1G27280.1 | 38.028 | 142 | 75 | 4 | 40 | 173 | 78 | 214 | 1.03e-21 | 94.0 |
MsaG030035 | AT1G27260.1 | 34.177 | 158 | 82 | 2 | 32 | 188 | 82 | 218 | 6.30e-21 | 91.7 |
MsaG030035 | AT1G27260.1 | 29.412 | 153 | 98 | 2 | 44 | 188 | 4 | 154 | 4.40e-15 | 74.7 |
MsaG030035 | AT1G24210.1 | 31.737 | 167 | 94 | 3 | 32 | 197 | 3 | 150 | 1.22e-18 | 83.2 |
MsaG030035 | AT5G15040.1 | 52.857 | 70 | 33 | 0 | 46 | 115 | 6 | 75 | 1.46e-18 | 80.9 |
MsaG030035 | AT5G15040.3 | 52.857 | 70 | 33 | 0 | 46 | 115 | 6 | 75 | 1.46e-18 | 80.9 |
MsaG030035 | AT5G15040.2 | 52.857 | 70 | 33 | 0 | 46 | 115 | 6 | 75 | 1.46e-18 | 80.9 |
MsaG030035 | AT4G12020.7 | 44.628 | 121 | 56 | 5 | 26 | 145 | 294 | 404 | 4.28e-18 | 88.2 |
MsaG030035 | AT4G12020.1 | 44.628 | 121 | 56 | 5 | 26 | 145 | 294 | 404 | 4.40e-18 | 88.2 |
MsaG030035 | AT4G12020.9 | 44.628 | 121 | 56 | 5 | 26 | 145 | 294 | 404 | 4.40e-18 | 88.2 |
MsaG030035 | AT4G12020.11 | 44.628 | 121 | 56 | 5 | 26 | 145 | 294 | 404 | 4.41e-18 | 88.2 |
MsaG030035 | AT4G12020.10 | 44.628 | 121 | 56 | 5 | 26 | 145 | 294 | 404 | 4.63e-18 | 88.2 |
MsaG030035 | AT4G12020.3 | 44.628 | 121 | 56 | 5 | 26 | 145 | 294 | 404 | 4.68e-18 | 88.2 |
MsaG030035 | AT4G12020.6 | 44.628 | 121 | 56 | 5 | 26 | 145 | 294 | 404 | 4.79e-18 | 88.2 |
MsaG030035 | AT4G12020.8 | 44.628 | 121 | 56 | 5 | 26 | 145 | 294 | 404 | 4.79e-18 | 88.2 |
MsaG030035 | AT4G12020.4 | 44.628 | 121 | 56 | 5 | 26 | 145 | 294 | 404 | 4.85e-18 | 88.2 |
MsaG030035 | AT4G12020.2 | 44.628 | 121 | 56 | 5 | 26 | 145 | 294 | 404 | 4.90e-18 | 88.2 |
MsaG030035 | AT4G12020.5 | 44.628 | 121 | 56 | 5 | 26 | 145 | 227 | 337 | 4.95e-18 | 88.2 |
MsaG030035 | AT1G27220.1 | 51.852 | 81 | 38 | 1 | 30 | 110 | 2 | 81 | 6.41e-18 | 82.0 |
MsaG030035 | AT1G27250.1 | 46.667 | 90 | 43 | 2 | 26 | 111 | 1 | 89 | 1.96e-16 | 76.3 |
MsaG030035 | AT1G27240.1 | 33.140 | 172 | 92 | 4 | 40 | 188 | 11 | 182 | 3.82e-15 | 73.9 |
Find 93 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTCACAGCAATTTGATTTA+TGG | 0.128457 | 6:+1648314 | MsaT030035.1:CDS |
GAGCGAATTCAATGATTATT+TGG | 0.184994 | 6:+1650197 | MsaT030035.1:CDS |
AATCACTATGGTCCTTAAAA+AGG | 0.198941 | 6:-1648760 | None:intergenic |
TGTAAACATGCTCGTCATTT+TGG | 0.199549 | 6:-1648539 | None:intergenic |
AAAGAATGATTTACAAAATA+TGG | 0.232835 | 6:+1649929 | MsaT030035.1:CDS |
GCATGTTTACAAATCATTCT+TGG | 0.291056 | 6:+1648551 | MsaT030035.1:CDS |
ATCAATGGTTGTCAGCTTCC+TGG | 0.311201 | 6:-1648043 | None:intergenic |
TGTCTACGAAGCTCTGAAAA+TGG | 0.317697 | 6:+1647967 | MsaT030035.1:intron |
TGAAGCTCCTCAAAAGAAAA+AGG | 0.344958 | 6:+1648385 | MsaT030035.1:CDS |
AGTCTTATCTCATGTCCTTT+TGG | 0.351855 | 6:-1648353 | None:intergenic |
TCCACTCAACATGCTTCATT+TGG | 0.357826 | 6:+1648830 | MsaT030035.1:CDS |
GGTGAAGGTGGAGTTGTTAA+TGG | 0.358574 | 6:+1648000 | MsaT030035.1:CDS |
GGAGTTCACTAGATTCTTAC+CGG | 0.365960 | 6:+1648790 | MsaT030035.1:CDS |
CGCTACTGATGGTCATTTAT+CGG | 0.366830 | 6:+1650507 | MsaT030035.1:CDS |
AGCAAAGGAAACGTGAGATC+AGG | 0.374268 | 6:+1648918 | MsaT030035.1:CDS |
AAAGTATGACATGTTCCTTC+AGG | 0.383357 | 6:+1648116 | MsaT030035.1:CDS |
TTGGAGCGTTGTGAAAATAC+TGG | 0.388042 | 6:+1650216 | MsaT030035.1:CDS |
GAAGGCACTTCAAGAATGTT+TGG | 0.395784 | 6:-1649881 | None:intergenic |
TTTGCAGACGGGTTTCTTGC+TGG | 0.396888 | 6:+1650317 | MsaT030035.1:intron |
ACTGCCTCCACAGTGATTGC+TGG | 0.397139 | 6:-1650906 | None:intergenic |
ACATCCATCCATCTCACGCT+TGG | 0.419117 | 6:-1650566 | None:intergenic |
GTTAAGAAGGCTGAAGCTAA+TGG | 0.427895 | 6:+1648995 | MsaT030035.1:CDS |
AAGTTTATGTGCGAAAGTTA+AGG | 0.441373 | 6:+1649833 | MsaT030035.1:CDS |
TGATGCTTTATCTTATTTGA+AGG | 0.444496 | 6:+1648062 | MsaT030035.1:CDS |
CATCCATCCATCTCACGCTT+GGG | 0.450025 | 6:-1650565 | None:intergenic |
TCAGGTCATGAAAGATTTCA+AGG | 0.452200 | 6:+1648134 | MsaT030035.1:CDS |
TTTCAGGTGACTGATTTACT+TGG | 0.452643 | 6:+1650156 | MsaT030035.1:intron |
GAGTGTTGAACATCCTGATC+TGG | 0.452673 | 6:+1648865 | MsaT030035.1:CDS |
CGTCGGCAAACATTGTTCTC+CGG | 0.456875 | 6:+1650651 | MsaT030035.1:CDS |
CAAATAAGATAAAGCATCAA+TGG | 0.460162 | 6:-1648058 | None:intergenic |
TTTCTGATGTAGGCCTAAGC+TGG | 0.463724 | 6:+1650822 | MsaT030035.1:intron |
GCTAAGGTCAAGTTCTTGAA+TGG | 0.463830 | 6:-1650629 | None:intergenic |
GGTGGAGTTGTTAATGGCGG+TGG | 0.467292 | 6:+1648006 | MsaT030035.1:CDS |
TCAATGGTTGTCAGCTTCCT+GGG | 0.471642 | 6:-1648042 | None:intergenic |
AACGTGAGATCAGGGATATC+AGG | 0.482826 | 6:+1648927 | MsaT030035.1:CDS |
GTTTCGTCGTCATCCAGATC+AGG | 0.486043 | 6:-1648878 | None:intergenic |
AATGGAGGTGGCAGTGGTGA+AGG | 0.491542 | 6:+1647985 | MsaT030035.1:CDS |
CACTGTGGAGGCAGTGCGCA+TGG | 0.497019 | 6:+1650914 | MsaT030035.1:CDS |
GTCTTCGTCGTCCTCCACCT+TGG | 0.506749 | 6:-1650536 | None:intergenic |
GTCGGCAAACATTGTTCTCC+GGG | 0.512223 | 6:+1650652 | MsaT030035.1:CDS |
AACAATGTTTGCCGACGCTA+AGG | 0.513153 | 6:-1650645 | None:intergenic |
TTCCATTGCTAAAATCATGA+AGG | 0.516038 | 6:-1649899 | None:intergenic |
GGAGGTGGCAGTGGTGAAGG+TGG | 0.519872 | 6:+1647988 | MsaT030035.1:CDS |
GGTGACAAGTCAGCCGTCGC+AGG | 0.523912 | 6:+1650868 | MsaT030035.1:CDS |
CAAAGAACCCAAGCGTGAGA+TGG | 0.525550 | 6:+1650558 | MsaT030035.1:CDS |
GTAGGTAGAAGCTGGTAGCC+CGG | 0.528926 | 6:-1650670 | None:intergenic |
GGAGTTGTTAATGGCGGTGG+AGG | 0.530443 | 6:+1648009 | MsaT030035.1:CDS |
GAAGGTTCTAGTGAATTATC+CGG | 0.534759 | 6:-1648809 | None:intergenic |
GAACCCAAGCGTGAGATGGA+TGG | 0.540388 | 6:+1650562 | MsaT030035.1:CDS |
TGGAGGCAGTGCGCATGGAT+TGG | 0.542075 | 6:+1650919 | MsaT030035.1:CDS |
TGAAATCTTTCATGACCTGA+AGG | 0.542141 | 6:-1648131 | None:intergenic |
ATCAGCACGTGATGAACCTA+CGG | 0.547401 | 6:-1647353 | None:intergenic |
ACTCCTCAAGCAAATCACTA+TGG | 0.556751 | 6:-1648772 | None:intergenic |
TGAACTTGTGCAAGGAGCAA+AGG | 0.558619 | 6:+1648903 | MsaT030035.1:CDS |
TCTGAAAATGGAGGTGGCAG+TGG | 0.559504 | 6:+1647979 | MsaT030035.1:CDS |
GCAAAGGAAACGTGAGATCA+GGG | 0.565159 | 6:+1648919 | MsaT030035.1:CDS |
AATGAAGCATGTTGAGTGGA+AGG | 0.569039 | 6:-1648827 | None:intergenic |
GGACCATAGTGATTTGCTTG+AGG | 0.570203 | 6:+1648769 | MsaT030035.1:CDS |
TGGTGTCATAGCTGCTGTCA+AGG | 0.570797 | 6:+1648280 | MsaT030035.1:CDS |
TGTCGTCAGTAGGTAGAAGC+TGG | 0.571961 | 6:-1650678 | None:intergenic |
TCAGCCGTCGCAGGTTGCAG+CGG | 0.572026 | 6:+1650877 | MsaT030035.1:CDS |
ATCGGAATCATCCAAGGTGG+AGG | 0.575755 | 6:+1650525 | MsaT030035.1:CDS |
TATGTGCGAAAGTTAAGGAG+AGG | 0.576086 | 6:+1649838 | MsaT030035.1:CDS |
AACATACAAGGAGAAATACA+TGG | 0.576965 | 6:+1650600 | MsaT030035.1:CDS |
TTCAACGCTTACCTACCAAA+AGG | 0.577015 | 6:+1648338 | MsaT030035.1:CDS |
GTGGAGGTGCAAGTACTCCC+AGG | 0.577879 | 6:+1648025 | MsaT030035.1:CDS |
CGAAGCTCTGAAAATGGAGG+TGG | 0.578837 | 6:+1647973 | MsaT030035.1:intron |
CTCACTGTAAACCTCAGTAA+TGG | 0.592350 | 6:-1648607 | None:intergenic |
GTTTCCAGGACGGACACTCA+TGG | 0.592858 | 6:+1648260 | MsaT030035.1:intron |
TGTATAACAATGTCCAGCTT+AGG | 0.593330 | 6:-1650835 | None:intergenic |
TCAGAGCCACTCGCTACTGA+TGG | 0.597556 | 6:+1650496 | MsaT030035.1:intron |
AGCTTCTACCTACTGACGAC+AGG | 0.599591 | 6:+1650680 | MsaT030035.1:CDS |
ACATGAGATAAGACTTGATG+AGG | 0.602915 | 6:+1648361 | MsaT030035.1:CDS |
CAAGAACTTGACCTTAGCGT+CGG | 0.605982 | 6:+1650634 | MsaT030035.1:CDS |
TCATTTATCGGAATCATCCA+AGG | 0.613554 | 6:+1650519 | MsaT030035.1:CDS |
ACGACCGCTGCAACCTGCGA+CGG | 0.621416 | 6:-1650881 | None:intergenic |
ATGAAATTCAAACGTCCCGT+AGG | 0.623131 | 6:+1647337 | MsaT030035.1:CDS |
GCTGTCAAGGAACTATTCAA+AGG | 0.626015 | 6:+1648293 | MsaT030035.1:CDS |
CGAAACAATGAACTTGTGCA+AGG | 0.629579 | 6:+1648895 | MsaT030035.1:CDS |
TGAAGAGAAAGAAACATACA+AGG | 0.631772 | 6:+1650588 | MsaT030035.1:CDS |
GAAGGTGGAGTTGTTAATGG+CGG | 0.639574 | 6:+1648003 | MsaT030035.1:CDS |
ACCAAATGAAGCATGTTGAG+TGG | 0.642539 | 6:-1648831 | None:intergenic |
GGAGAGGTTGAGCAGCGCTG+AGG | 0.647893 | 6:+1649854 | MsaT030035.1:CDS |
CTACGAAGCTCTGAAAATGG+AGG | 0.662448 | 6:+1647970 | MsaT030035.1:intron |
TCAGCACGTGATGAACCTAC+GGG | 0.664578 | 6:-1647352 | None:intergenic |
GTAGCCAGCAATCACTGTGG+AGG | 0.664908 | 6:+1650902 | MsaT030035.1:CDS |
ACATACAAGGAGAAATACAT+GGG | 0.670004 | 6:+1650601 | MsaT030035.1:CDS |
AAATGACCATCAGTAGCGAG+TGG | 0.680516 | 6:-1650502 | None:intergenic |
CATTACTGAGGTTTACAGTG+AGG | 0.688498 | 6:+1648608 | MsaT030035.1:CDS |
AGAACACAAGACCATTACTG+AGG | 0.690770 | 6:+1648596 | MsaT030035.1:CDS |
TTTATCGGAATCATCCAAGG+TGG | 0.715628 | 6:+1650522 | MsaT030035.1:CDS |
ATTGTTATACACATTGCGCG+CGG | 0.726992 | 6:+1650847 | MsaT030035.1:CDS |
GTCGTAGCCAGCAATCACTG+TGG | 0.732284 | 6:+1650899 | MsaT030035.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 1647337 | 1650993 | 1647337 | ID=MsaG030035 |
Chr6 | mRNA | 1647337 | 1650993 | 1647337 | ID=MsaT030035.1;Parent=MsaG030035 |
Chr6 | exon | 1647337 | 1647377 | 1647337 | ID=MsaT030035.1.exon1;Parent=MsaT030035.1 |
Chr6 | CDS | 1647337 | 1647377 | 1647337 | ID=cds.MsaT030035.1;Parent=MsaT030035.1 |
Chr6 | exon | 1647978 | 1648163 | 1647978 | ID=MsaT030035.1.exon2;Parent=MsaT030035.1 |
Chr6 | CDS | 1647978 | 1648163 | 1647978 | ID=cds.MsaT030035.1;Parent=MsaT030035.1 |
Chr6 | exon | 1648268 | 1648448 | 1648268 | ID=MsaT030035.1.exon3;Parent=MsaT030035.1 |
Chr6 | CDS | 1648268 | 1648448 | 1648268 | ID=cds.MsaT030035.1;Parent=MsaT030035.1 |
Chr6 | exon | 1648531 | 1648629 | 1648531 | ID=MsaT030035.1.exon4;Parent=MsaT030035.1 |
Chr6 | CDS | 1648531 | 1648629 | 1648531 | ID=cds.MsaT030035.1;Parent=MsaT030035.1 |
Chr6 | exon | 1648752 | 1649064 | 1648752 | ID=MsaT030035.1.exon5;Parent=MsaT030035.1 |
Chr6 | CDS | 1648752 | 1649064 | 1648752 | ID=cds.MsaT030035.1;Parent=MsaT030035.1 |
Chr6 | exon | 1649814 | 1649950 | 1649814 | ID=MsaT030035.1.exon6;Parent=MsaT030035.1 |
Chr6 | CDS | 1649814 | 1649950 | 1649814 | ID=cds.MsaT030035.1;Parent=MsaT030035.1 |
Chr6 | exon | 1650162 | 1650237 | 1650162 | ID=MsaT030035.1.exon7;Parent=MsaT030035.1 |
Chr6 | CDS | 1650162 | 1650237 | 1650162 | ID=cds.MsaT030035.1;Parent=MsaT030035.1 |
Chr6 | exon | 1650324 | 1650353 | 1650324 | ID=MsaT030035.1.exon8;Parent=MsaT030035.1 |
Chr6 | CDS | 1650324 | 1650353 | 1650324 | ID=cds.MsaT030035.1;Parent=MsaT030035.1 |
Chr6 | exon | 1650500 | 1650701 | 1650500 | ID=MsaT030035.1.exon9;Parent=MsaT030035.1 |
Chr6 | CDS | 1650500 | 1650701 | 1650500 | ID=cds.MsaT030035.1;Parent=MsaT030035.1 |
Chr6 | exon | 1650834 | 1650993 | 1650834 | ID=MsaT030035.1.exon10;Parent=MsaT030035.1 |
Chr6 | CDS | 1650834 | 1650993 | 1650834 | ID=cds.MsaT030035.1;Parent=MsaT030035.1 |
Gene Sequence |
Protein sequence |