AlfalfaGEDB | MsaG030035

M. sativa ssp. caerulea / MsaG030035

KEGG: K11644
GO: GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030035	XP_013450895.2	90.638	470	42	1	1	470	1	468	0.0	825

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030035	sp\|Q9LFQ3\|SNL2_ARATH	54.701	468	158	8	2	420	14	476	1.70e-141	442

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030035	tr\|A0A396HB94\|A0A396HB94_MEDTR	90.638	470	42	1	1	470	1	468	0.0	825

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TFs/TRs:

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Gene ID	Type	Classification
MsaG030035	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030035	MtrunA17_Chr6g0452021	90.638	470	42	1	1	470	1	468	0.0	825
MsaG030035	MtrunA17_Chr6g0452001	67.715	477	89	7	2	420	15	484	0.0	568
MsaG030035	MtrunA17_Chr8g0364231	44.400	500	183	11	2	418	13	500	5.89e-104	338
MsaG030035	MtrunA17_Chr5g0415031	41.551	503	192	14	2	420	14	498	4.12e-89	296
MsaG030035	MtrunA17_Chr1g0206771	41.176	153	84	2	38	189	10	157	2.45e-27	108
MsaG030035	MtrunA17_Chr1g0206781	51.648	91	44	0	35	125	3	93	1.52e-23	95.5
MsaG030035	MtrunA17_Chr1g0205821	36.000	150	94	2	43	190	13	162	1.96e-23	97.1
MsaG030035	MtrunA17_Chr1g0205821	45.833	72	39	0	44	115	100	171	1.59e-15	74.7
MsaG030035	MtrunA17_Chr3g0077891	39.130	161	90	3	37	189	2	162	6.85e-23	95.5
MsaG030035	MtrunA17_Chr3g0077891	50.667	75	36	1	37	110	93	167	1.77e-17	80.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030035	AT5G15020.2	54.701	468	158	8	2	420	14	476	1.64e-142	442
MsaG030035	AT5G15020.1	54.701	468	158	8	2	420	14	476	1.73e-142	442
MsaG030035	AT3G01320.1	53.518	469	167	10	2	420	14	481	1.39e-134	421
MsaG030035	AT3G01320.2	51.812	469	163	11	2	420	14	469	1.33e-127	402
MsaG030035	AT1G24190.2	43.736	439	191	12	29	418	3	434	1.38e-96	317
MsaG030035	AT1G24190.3	43.736	439	191	12	29	418	3	434	1.87e-96	317
MsaG030035	AT1G24190.1	43.115	443	192	13	29	418	3	438	2.49e-93	308
MsaG030035	AT1G70060.2	41.907	451	197	8	32	418	3	452	3.15e-89	297
MsaG030035	AT1G70060.1	41.907	451	197	8	32	418	3	452	3.15e-89	297
MsaG030035	AT1G10450.2	55.249	181	77	2	26	205	19	196	1.31e-52	191

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Find 93 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGATTTACAAAATA+TGG	0.232835	6:+1649929	MsaT030035.1:CDS
AAAGTATGACATGTTCCTTC+AGG	0.383357	6:+1648116	MsaT030035.1:CDS
AAATGACCATCAGTAGCGAG+TGG	0.680516	6:-1650502	None:intergenic
AACAATGTTTGCCGACGCTA+AGG	0.513153	6:-1650645	None:intergenic
AACATACAAGGAGAAATACA+TGG	0.576965	6:+1650600	MsaT030035.1:CDS
AACGTGAGATCAGGGATATC+AGG	0.482826	6:+1648927	MsaT030035.1:CDS
AAGTTTATGTGCGAAAGTTA+AGG	0.441373	6:+1649833	MsaT030035.1:CDS
AATCACTATGGTCCTTAAAA+AGG	0.198941	6:-1648760	None:intergenic
AATGAAGCATGTTGAGTGGA+AGG	0.569039	6:-1648827	None:intergenic
AATGGAGGTGGCAGTGGTGA+AGG	0.491542	6:+1647985	MsaT030035.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	1647337	1650993	1647337	ID=MsaG030035
Chr6	mRNA	1647337	1650993	1647337	ID=MsaT030035.1;Parent=MsaG030035
Chr6	exon	1647337	1647377	1647337	ID=MsaT030035.1.exon1;Parent=MsaT030035.1
Chr6	CDS	1647337	1647377	1647337	ID=cds.MsaT030035.1;Parent=MsaT030035.1
Chr6	exon	1647978	1648163	1647978	ID=MsaT030035.1.exon2;Parent=MsaT030035.1
Chr6	CDS	1647978	1648163	1647978	ID=cds.MsaT030035.1;Parent=MsaT030035.1
Chr6	exon	1648268	1648448	1648268	ID=MsaT030035.1.exon3;Parent=MsaT030035.1
Chr6	CDS	1648268	1648448	1648268	ID=cds.MsaT030035.1;Parent=MsaT030035.1
Chr6	exon	1648531	1648629	1648531	ID=MsaT030035.1.exon4;Parent=MsaT030035.1
Chr6	CDS	1648531	1648629	1648531	ID=cds.MsaT030035.1;Parent=MsaT030035.1
Chr6	exon	1648752	1649064	1648752	ID=MsaT030035.1.exon5;Parent=MsaT030035.1
Chr6	CDS	1648752	1649064	1648752	ID=cds.MsaT030035.1;Parent=MsaT030035.1
Chr6	exon	1649814	1649950	1649814	ID=MsaT030035.1.exon6;Parent=MsaT030035.1
Chr6	CDS	1649814	1649950	1649814	ID=cds.MsaT030035.1;Parent=MsaT030035.1
Chr6	exon	1650162	1650237	1650162	ID=MsaT030035.1.exon7;Parent=MsaT030035.1
Chr6	CDS	1650162	1650237	1650162	ID=cds.MsaT030035.1;Parent=MsaT030035.1
Chr6	exon	1650324	1650353	1650324	ID=MsaT030035.1.exon8;Parent=MsaT030035.1
Chr6	CDS	1650324	1650353	1650324	ID=cds.MsaT030035.1;Parent=MsaT030035.1
Chr6	exon	1650500	1650701	1650500	ID=MsaT030035.1.exon9;Parent=MsaT030035.1
Chr6	CDS	1650500	1650701	1650500	ID=cds.MsaT030035.1;Parent=MsaT030035.1
Chr6	exon	1650834	1650993	1650834	ID=MsaT030035.1.exon10;Parent=MsaT030035.1
Chr6	CDS	1650834	1650993	1650834	ID=cds.MsaT030035.1;Parent=MsaT030035.1

Gene Sequence

>MsaT030035.1

ATGAAATTCAAACGTCCCGTAGGTTCATCACGTGCTGATTCCTCTGAAAATGGAGGTGGCAGTGGTGAAGGTGGAGTTGTTAATGGCGGTGGAGGTGCAAGTACTCCCAGGAAGCTGACAACCATTGATGCTTTATCTTATTTGAAGGAAGTGAAAAACACGTTTCCGGATCAAAAAGAAAAGTATGACATGTTCCTTCAGGTCATGAAAGATTTCAAGGCTCAAAAGACGGACACTCATGGTGTCATAGCTGCTGTCAAGGAACTATTCAAAGGTCACAGCAATTTGATTTATGGATTCAACGCTTACCTACCAAAAGGACATGAGATAAGACTTGATGAGGATGAAGCTCCTCAAAAGAAAAAGGTTGAATTTGAAGATGCTATTAGTTTTGTGGGCAAGATAAAGCAACAATTCCAAAATGACGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGCAAAGAACACAAGACCATTACTGAGGTTTACAGTGAGGTTGCTACCCTTTTTAAGGACCATAGTGATTTGCTTGAGGAGTTCACTAGATTCTTACCGGATAATTCACTAGAACCTTCCACTCAACATGCTTCATTTGGTCATCGTGATCTGAGTGTTGAACATCCTGATCTGGATGACGACGAAACAATGAACTTGTGCAAGGAGCAAAGGAAACGTGAGATCAGGGATATCAGGAAACATGATTTGAACTCACTACGCTCTCCTAACAAAAAGAAATCTGTTAAGAAGGCTGAAGCTAATGGATTGTCTTCTGACTTAGCTTCTCATGATGATAAAGATGTGTTAAAGATCATGTATAGTCAAGCGTTAAGTTTATGTGCGAAAGTTAAGGAGAGGTTGAGCAGCGCTGAGGACTACCAAACATTCTTGAAGTGCCTTCATGATTTTAGCAATGGAATAATAAAAAAGAATGATTTACAAAATATGGTGACTGATTTACTTGGAAAGCATTCTGATCTCATGAGCGAATTCAATGATTATTTGGAGCGTTGTGAAAATACTGACGGGTTTCTTGCTGGTGTCGCGAGTGAAAAGCCACTCGCTACTGATGGTCATTTATCGGAATCATCCAAGGTGGAGGACGACGAAGACAAAGAACCCAAGCGTGAGATGGATGGATGTGAAGAGAAAGAAACATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGCGTCGGCAAACATTGTTCTCCGGGCTACCAGCTTCTACCTACTGACGACAGGCCTAAGCTGGACATTGTTATACACATTGCGCGCGGTGACAAGTCAGCCGTCGCAGGTTGCAGCGGTCGTAGCCAGCAATCACTGTGGAGGCAGTGCGCATGGATTGGTCTTCTAATTATTATCTATTTATTTTTCTTTTATTTAATTTTAATTTTTTGA

Protein sequence

>MsaT030035.1

MKFKRPVGSSRADSSENGGGSGEGGVVNGGGGASTPRKLTTIDALSYLKEVKNTFPDQKEKYDMFLQVMKDFKAQKTDTHGVIAAVKELFKGHSNLIYGFNAYLPKGHEIRLDEDEAPQKKKVEFEDAISFVGKIKQQFQNDEHVYKSFLDILNMYRKEHKTITEVYSEVATLFKDHSDLLEEFTRFLPDNSLEPSTQHASFGHRDLSVEHPDLDDDETMNLCKEQRKREIRDIRKHDLNSLRSPNKKKSVKKAEANGLSSDLASHDDKDVLKIMYSQALSLCAKVKERLSSAEDYQTFLKCLHDFSNGIIKKNDLQNMVTDLLGKHSDLMSEFNDYLERCENTDGFLAGVASEKPLATDGHLSESSKVEDDEDKEPKREMDGCEEKETYKEKYMGKSIQELDLSVGKHCSPGYQLLPTDDRPKLDIVIHIARGDKSAVAGCSGRSQQSLWRQCAWIGLLIIIYLFFFYLILIF*