AlfalfaGEDB | MsaG030139

M. sativa ssp. caerulea / MsaG030139

KEGG: -
GO: GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0001763 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005911 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0008327 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009889 GO:0009987 GO:0010016 GO:0010216 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0016043 GO:0016407 GO:0016410 GO:0016567 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0034212 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048573 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0061733 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00628.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030139	XP_013450825.2	95.035	141	2	3	1	140	1	137	3.65e-80	268

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030139	sp\|Q9SGH2\|MBD9_ARATH	36.957	138	67	7	7	132	4	133	6.75e-13	68.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030139	tr\|A0A396H9D5\|A0A396H9D5_MEDTR	95.035	141	2	3	1	140	1	137	1.74e-80	268

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TFs/TRs:

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Gene ID	Type	Classification
MsaG030139	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030139	MtrunA17_Chr6g0451001	95.035	141	2	3	1	140	1	137	3.36e-84	268

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030139	AT3G01460.1	36.957	138	67	7	7	132	4	133	6.87e-14	68.2

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Find 61 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGAAGGTGAAGGTGAA+GGG	0.487631	6:-3112580	None:intergenic
AAGGTGAAGGGATCTCGTTA+AGG	0.562146	6:-3112568	None:intergenic
AAGGTTGTTACCTGCGGCGG+TGG	0.470430	6:-3112489	None:intergenic
AATCCCGCTCCTCCTCCCGG+TGG	0.675488	6:+3112659	MsaT030139.1:CDS
ACACACCAAACCACCGGCGC+CGG	0.584128	6:-3112732	None:intergenic
ACACCGCCAGGAAGAGGCGC+AGG	0.541866	6:-3112683	None:intergenic
ACGAAGGAAGAAGAAGGTGA+AGG	0.668161	6:-3112587	None:intergenic
ACGATGTCGACGGTGAAGTC+AGG	0.471202	6:-3112620	None:intergenic
ACTCACTCCGATGATCATGG+CGG	0.776957	6:+3112454	None:intergenic
AGAATTGGAGCGGCGAGTAT+AGG	0.461015	6:+3112806	MsaT030139.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	3112464	3112889	3112464	ID=MsaG030139
Chr6	mRNA	3112464	3112889	3112464	ID=MsaT030139.1;Parent=MsaG030139
Chr6	exon	3112464	3112889	3112464	ID=MsaT030139.1.exon1;Parent=MsaT030139.1
Chr6	CDS	3112464	3112889	3112464	ID=cds.MsaT030139.1;Parent=MsaT030139.1

Gene Sequence

>MsaT030139.1

ATGATCATGGCGGAACTAACCGATTCCACCGCCGCAGGTAACAACCTTCCGCCGCCGCAACAACCACCTCATCAAATTGACACGCGTTCAATCCTCTGCATCGACCTTAACGAGATCCCTTCACCTTCACCTTCTTCTTCCTTCGTTGAAACCCTACCTGACTTCACCGTCGACATCGTTCGTACTTATCACGAGAATCCCGCTCCTCCTCCCGGTGGTCCTGCGCCTCTTCCTGGCGGTGTCACTTCCTGCGCTGTTTGTTCTAAGTCCGGCGCCGGTGGTTTGGTGTGTGATGGATGTGAACGGAGTTTTCATTTGGCGTGTGCTGGAGTTCGTGGTGGAAGAATTGGAGCGGCGAGTATAGGAGAGTGGGTGTGTGGTGAGTGTTTAGAGGGTGTGAAAAGTAAAGATGGCCGTTGGGTGTGA

Protein sequence

>MsaT030139.1

MIMAELTDSTAAGNNLPPPQQPPHQIDTRSILCIDLNEIPSPSPSSSFVETLPDFTVDIVRTYHENPAPPPGGPAPLPGGVTSCAVCSKSGAGGLVCDGCERSFHLACAGVRGGRIGAASIGEWVCGECLEGVKSKDGRWV*