AlfalfaGEDB | MsaG030141

M. sativa ssp. caerulea / MsaG030141

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030141	KEH24863.1	98.958	288	2	1	1	288	1	287	0.0	583

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030141	sp\|Q02283\|HAT5_ARATH	57.143	287	101	8	1	282	1	270	1.26e-96	288

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030141	tr\|A0A072U6Z4\|A0A072U6Z4_MEDTR	98.958	288	2	1	1	288	1	287	0.0	583

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TFs/TRs:

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Gene ID	Type	Classification
MsaG030141	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030141	MtrunA17_Chr6g0450991	98.958	288	2	1	1	288	1	287	0.0	583
MsaG030141	MtrunA17_Chr5g0415941	43.621	243	91	8	30	232	39	275	8.54e-46	157
MsaG030141	MtrunA17_Chr4g0060031	42.922	219	92	5	40	229	64	278	5.38e-44	152
MsaG030141	MtrunA17_Chr8g0362751	55.944	143	56	3	29	164	43	185	2.22e-42	147
MsaG030141	MtrunA17_Chr8g0362151	64.948	97	34	0	67	163	76	172	5.76e-39	138
MsaG030141	MtrunA17_Chr8g0381741	52.113	142	55	1	33	174	32	160	1.01e-38	138
MsaG030141	MtrunA17_Chr6g0453021	62.162	111	41	1	53	163	82	191	2.16e-38	136
MsaG030141	MtrunA17_Chr5g0416391	57.031	128	47	1	44	163	45	172	4.92e-38	135
MsaG030141	MtrunA17_Chr3g0123691	62.264	106	40	0	67	172	59	164	1.07e-36	132
MsaG030141	MtrunA17_Chr3g0119291	59.664	119	46	1	48	164	37	155	1.65e-36	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030141	AT3G01470.1	57.143	287	101	8	1	282	1	270	1.28e-97	288
MsaG030141	AT5G65310.2	60.909	110	43	0	65	174	51	160	2.11e-38	137
MsaG030141	AT5G65310.1	62.037	108	41	0	67	174	71	178	3.13e-38	137
MsaG030141	AT2G22430.1	68.367	98	31	0	67	164	61	158	3.70e-38	137
MsaG030141	AT4G40060.1	49.315	146	67	1	54	192	45	190	5.02e-38	136
MsaG030141	AT1G69780.1	50.355	141	62	2	57	189	72	212	6.97e-38	135
MsaG030141	AT5G15150.1	70.213	94	28	0	67	160	114	207	1.17e-37	135
MsaG030141	AT3G01220.1	65.979	97	33	0	67	163	86	182	1.76e-35	129
MsaG030141	AT1G26960.1	46.622	148	71	2	29	174	36	177	2.84e-33	122
MsaG030141	AT1G27045.5	62.000	100	38	0	68	167	25	124	7.01e-33	119

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Find 73 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGAGCTATGTCCAC+TGG	0.550742	6:+3127507	None:intergenic
AACAATGACACCAACGACAC+GGG	0.527406	6:+3127416	None:intergenic
AACATATGATTCCATTACTA+AGG	0.392206	6:-3128281	MsaT030141.1:CDS
AACATGAACATGCTGTTTCT+TGG	0.235472	6:-3129856	MsaT030141.1:CDS
AACCAACCTGCTCGGAAGTG+AGG	0.594175	6:+3129101	None:intergenic
AACCATACAGCCACCTGCCT+AGG	0.579439	6:+3128388	None:intergenic
AACCTAGGCAGGTGGCTGTA+TGG	0.452751	6:-3128390	MsaT030141.1:CDS
AACTTGAAGCTTCTCATTTA+AGG	0.097700	6:+3127584	None:intergenic
AAGAGGGAGAGGCACTGAAT+TGG	0.468712	6:-3127242	MsaT030141.1:CDS
AAGATGATGGGAGTGATGAT+GGG	0.542417	6:-3127317	MsaT030141.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	3127215	3129926	3127215	ID=MsaG030141
Chr6	mRNA	3127215	3129926	3127215	ID=MsaT030141.1;Parent=MsaG030141
Chr6	exon	3127215	3127613	3127215	ID=MsaT030141.1.exon4;Parent=MsaT030141.1
Chr6	CDS	3127215	3127613	3127215	ID=cds.MsaT030141.1;Parent=MsaT030141.1
Chr6	exon	3128258	3128497	3128258	ID=MsaT030141.1.exon3;Parent=MsaT030141.1
Chr6	CDS	3128258	3128497	3128258	ID=cds.MsaT030141.1;Parent=MsaT030141.1
Chr6	exon	3129108	3129241	3129108	ID=MsaT030141.1.exon2;Parent=MsaT030141.1
Chr6	CDS	3129108	3129241	3129108	ID=cds.MsaT030141.1;Parent=MsaT030141.1
Chr6	exon	3129833	3129926	3129833	ID=MsaT030141.1.exon1;Parent=MsaT030141.1
Chr6	CDS	3129833	3129926	3129833	ID=cds.MsaT030141.1;Parent=MsaT030141.1

Gene Sequence

>MsaT030141.1

ATGGAGTCTGGTCGTCTTTACTTTGATTCTTCTGCTTGTCGTGGGAATAACATGAACATGCTGTTTCTTGGAAATGCTGATCTTGGTTTTCGAGCAGGAAGGTCAATGATGAGCATGGGGGAAGGCTCAAAAAGGAGACCTTTCTTTAGCTCACCGGATGAACTGTATGATGAGGAGTACTACGAAGAACAGTCACCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCATATGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTTGAGCCAGAGAGGAAAACCCAGTTGGCCAAGAAACTAGGATTGCAACCTAGGCAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTCAAGTCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTACTAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGATATGCTTGAAGAACCTTTGTCAGAAAAGAAAGCTGATCCACTTCCAGTGGACATAGCTCAGATTTTCAGCATCAAGGTGGATGACCACATGAGTTCTGGAAGCGTTGGAAGTGCAGTGGTGGACGAGAGTAGCCCCCGTGTCGTTGGTGTCATTGTTGACAGCGTCGATTCATACTTTCCAGCTGACAACTATGCTGGATGTGTGGCTCCTATTGAAAGAGTTCAATCAGAGGAAGATGATGGGAGTGATGATGGGAGGAACTACTTTGATGTGTTTGTTGCATCTGAAACTGAGCAACATAACCATGAAGAGGGAGAGGCACTGAATTGGTGGGGTAATATGTATTATGTTGCATAA

Protein sequence

>MsaT030141.1

MESGRLYFDSSACRGNNMNMLFLGNADLGFRAGRSMMSMGEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSITKENEKLKSEVVSLNEKLQVQAKDMLEEPLSEKKADPLPVDIAQIFSIKVDDHMSSGSVGSAVVDESSPRVVGVIVDSVDSYFPADNYAGCVAPIERVQSEEDDGSDDGRNYFDVFVASETEQHNHEEGEALNWWGNMYYVA*