AlfalfaGEDB | MsaG030367

M. sativa ssp. caerulea / MsaG030367

KEGG: K15032
GO: -
PFAM: PF02536.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030367	sp\|Q9SZL6\|MTEF6_ARATH	30.351	313	180	6	285	593	46	324	5.85e-35	138

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030367	tr\|A0A072U5S3\|A0A072U5S3_MEDTR	94.599	611	31	1	1	611	1	609	0.0	1142

TFs/TRs:

Gene ID	Type	Classification
MsaG030367	TR	mTERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000583	MsaG030367	0.808614	4.838253e-50	7.990767e-48
MsaG002065	MsaG030367	0.827576	2.588558e-54	6.995206e-52
MsaG006136	MsaG030367	0.842447	4.785179e-58	2.018747e-55
MsaG008080	MsaG030367	0.802318	9.970618e-49	1.420836e-46
MsaG008148	MsaG030367	0.825410	8.450791e-54	2.149847e-51
MsaG009004	MsaG030367	0.811462	1.186190e-50	2.099373e-48
MsaG017248	MsaG030367	0.819905	1.590491e-52	3.489223e-50
MsaG017679	MsaG030367	0.800852	1.986228e-48	2.737607e-46
MsaG018642	MsaG030367	0.841937	6.519597e-58	2.705863e-55
MsaG023633	MsaG030367	0.816751	8.175349e-52	1.652359e-49
MsaG026054	MsaG030367	0.873516	2.849841e-67	3.839911e-64
MsaG027001	MsaG030367	0.865816	8.987294e-65	8.772816e-62
MsaG027329	MsaG030367	0.812508	7.037987e-51	1.278170e-48
MsaG027808	MsaG030367	0.815270	1.743748e-51	3.393989e-49
MsaG027970	MsaG030367	0.826201	5.495035e-54	1.429026e-51
MsaG030366	MsaG030367	0.819249	2.241821e-52	4.834030e-50
MsaG030367	MsaG030368	0.815518	1.537209e-51	3.010725e-49
MsaG030367	MsaG031143	0.867866	2.013503e-65	2.136045e-62
MsaG030367	MsaG031593	0.816707	8.360758e-52	1.687919e-49
MsaG030367	MsaG035557	0.810465	1.945781e-50	3.360842e-48
MsaG030367	MsaG035582	0.855960	8.609036e-62	5.758562e-59
MsaG030367	MsaG035560	0.806973	1.076167e-49	1.708884e-47
MsaG030367	MsaG035563	0.803192	6.595779e-49	9.589540e-47
MsaG030367	MsaG035564	0.810588	1.831217e-50	3.172344e-48
MsaG030367	MsaG035567	0.811628	1.092099e-50	1.940695e-48
MsaG030367	MsaG037763	0.814594	2.458514e-51	4.704019e-49
MsaG030367	MsaG040443	0.800153	2.752892e-48	3.734874e-46
MsaG030367	MsaG046156	0.802730	8.210035e-49	1.180965e-46
MsaG030367	MsaG004765	0.802207	1.051022e-48	1.493846e-46
MsaG030367	MsaG004834	0.811686	1.061358e-50	1.888752e-48
MsaG030367	MsaG008748	0.802801	7.937890e-49	1.143682e-46
MsaG030367	MsaG026617	0.825520	7.959583e-54	2.031209e-51
MsaG030367	MsaG026351	0.805447	2.247724e-49	3.443261e-47
MsaG030367	MsaG031899	0.810027	2.416229e-50	4.128900e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030367	MtrunA17_Chr6g0448821	96.561	378	13	0	234	611	1	378	0.0	744
MsaG030367	MtrunA17_Chr6g0448831	90.000	180	16	1	1	180	4	181	1.50e-98	298
MsaG030367	MtrunA17_Chr4g0043941	27.331	311	190	4	285	593	46	322	9.94e-36	137
MsaG030367	MtrunA17_Chr4g0034981	28.972	321	224	4	272	589	266	585	4.44e-34	137
MsaG030367	MtrunA17_Chr2g0294671	30.859	256	172	3	335	589	231	482	2.57e-31	127
MsaG030367	MtrunA17_Chr5g0417641	28.807	243	166	4	351	591	57	294	1.04e-25	107
MsaG030367	MtrunA17_Chr1g0212691	26.269	335	241	6	265	595	124	456	1.09e-24	108
MsaG030367	MtrunA17_Chr5g0428941	23.698	384	241	7	210	589	147	482	4.91e-24	106
MsaG030367	MtrunA17_Chr5g0428941	26.009	223	156	5	352	569	140	358	8.14e-14	74.3
MsaG030367	MtrunA17_Chr2g0311181	28.934	197	133	2	372	567	87	277	1.12e-21	96.7
MsaG030367	MtrunA17_Chr5g0445491	26.911	327	184	6	283	596	194	478	3.99e-20	94.0
MsaG030367	MtrunA17_Chr2g0304101	25.439	228	158	3	368	589	83	304	1.57e-18	87.0
MsaG030367	MtrunA17_Chr7g0250261	30.000	160	107	4	436	593	127	283	3.28e-16	79.3
MsaG030367	MtrunA17_Chr0c29g0494001	30.000	160	107	4	436	593	127	283	3.28e-16	79.3
MsaG030367	MtrunA17_Chr8g0391881	22.256	328	199	8	283	566	59	374	1.94e-13	72.4
MsaG030367	MtrunA17_Chr3g0094341	24.176	182	118	4	394	562	27	201	1.51e-11	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030367	AT1G78930.1	50.958	522	247	5	80	599	70	584	0.0	525
MsaG030367	AT4G38160.4	30.351	313	180	6	285	593	46	324	5.95e-36	138
MsaG030367	AT4G38160.1	30.351	313	180	6	285	593	46	324	5.95e-36	138
MsaG030367	AT4G38160.2	29.503	322	188	7	285	602	46	332	6.69e-36	139
MsaG030367	AT4G38160.3	30.124	322	186	7	285	602	46	332	2.07e-35	137
MsaG030367	AT2G21710.1	27.389	314	224	4	279	589	280	592	3.76e-31	129
MsaG030367	AT4G14605.2	28.358	268	180	5	323	589	211	467	2.80e-30	125
MsaG030367	AT4G14605.1	28.358	268	180	5	323	589	211	467	2.80e-30	125
MsaG030367	AT2G03050.2	31.687	243	156	6	351	589	33	269	2.37e-28	115
MsaG030367	AT2G03050.1	31.687	243	156	6	351	589	32	268	2.61e-28	115
MsaG030367	AT2G36000.2	30.942	223	143	5	372	589	91	307	1.47e-23	102
MsaG030367	AT2G36000.1	30.942	223	143	5	372	589	91	307	2.72e-23	101
MsaG030367	AT4G02990.2	24.128	344	219	8	284	589	151	490	1.61e-22	102
MsaG030367	AT4G02990.1	24.128	344	219	8	284	589	151	490	1.61e-22	102
MsaG030367	AT5G55580.2	26.877	253	176	5	352	596	114	365	1.79e-21	97.4
MsaG030367	AT2G21710.2	25.180	278	204	4	279	553	280	556	2.10e-21	98.6
MsaG030367	AT2G21710.2	22.368	228	166	3	348	567	278	502	6.40e-13	72.0
MsaG030367	AT2G44020.1	24.776	335	246	6	265	595	129	461	5.12e-21	97.4
MsaG030367	AT5G55580.1	26.482	253	177	5	352	596	220	471	9.96e-21	96.3
MsaG030367	AT2G21710.3	24.910	277	204	4	279	552	280	555	1.24e-20	96.3
MsaG030367	AT2G21710.3	22.368	228	166	3	348	567	278	502	4.65e-13	72.4
MsaG030367	AT2G34620.1	26.339	224	161	3	368	589	69	290	1.70e-19	90.1
MsaG030367	AT1G61970.2	27.508	309	212	9	266	571	70	369	2.33e-18	88.2
MsaG030367	AT1G61970.7	27.508	309	212	9	266	571	70	369	2.33e-18	88.2
MsaG030367	AT1G61970.6	27.508	309	212	9	266	571	70	369	2.33e-18	88.2
MsaG030367	AT1G61970.3	27.508	309	212	9	266	571	70	369	2.33e-18	88.2
MsaG030367	AT1G61970.5	27.508	309	212	9	266	571	70	369	2.33e-18	88.2
MsaG030367	AT1G61970.4	27.508	309	212	9	266	571	70	369	2.33e-18	88.2
MsaG030367	AT1G61970.1	27.508	309	212	9	266	571	70	369	2.33e-18	88.2
MsaG030367	AT3G18870.1	27.607	163	115	2	431	593	113	272	3.38e-17	82.8
MsaG030367	AT1G62110.1	25.484	310	220	8	265	571	105	406	1.48e-15	80.1
MsaG030367	AT1G61980.3	25.559	313	213	10	266	571	70	369	3.07e-15	78.6
MsaG030367	AT1G61980.2	25.559	313	213	10	266	571	70	369	3.07e-15	78.6
MsaG030367	AT1G61980.1	25.559	313	213	10	266	571	70	369	3.07e-15	78.6
MsaG030367	AT1G62120.1	25.170	294	206	8	282	570	90	374	3.47e-15	78.6
MsaG030367	AT1G61990.2	24.138	406	270	12	212	602	2	384	6.37e-15	77.8
MsaG030367	AT1G61990.1	24.138	406	270	12	212	602	2	384	6.37e-15	77.8
MsaG030367	AT1G62010.1	32.386	176	114	4	395	570	182	352	2.22e-14	75.9
MsaG030367	AT1G62085.1	29.310	174	109	5	429	602	270	429	1.19e-13	73.9
MsaG030367	AT1G62085.2	29.310	174	109	5	429	602	270	429	1.19e-13	73.9
MsaG030367	AT1G61960.1	22.596	416	250	16	210	570	6	404	1.78e-13	73.6
MsaG030367	AT3G46950.1	24.868	378	248	13	205	571	48	400	5.20e-12	68.9
MsaG030367	AT5G55580.3	27.333	150	106	3	390	536	223	372	6.47e-12	68.2
MsaG030367	AT5G23930.1	32.479	117	77	2	455	571	288	402	2.83e-11	66.6

Find 133 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAGAAGGAAATTGCATTTA+TGG	0.115303	6:-6978024	MsaT030367.1:CDS
TGTTATGTTCTTTGAAAATA+TGG	0.137547	6:-6978544	MsaT030367.1:CDS
TTCACAAAGTATTCTCAATT+TGG	0.141339	6:-6984317	MsaT030367.1:CDS
GATGCCAAAATTAGAATTTC+TGG	0.144550	6:-6977955	MsaT030367.1:CDS
TTCACCAGAAATTCTAATTT+TGG	0.159132	6:+6977951	None:intergenic
CTGCGGGGATCCCAATATTT+TGG	0.192705	6:+6983562	None:intergenic
AGAATTTGCTGCTGAATTTA+TGG	0.206246	6:-6977781	MsaT030367.1:CDS
CTGGATATTCTCCAAAATAT+TGG	0.247372	6:-6983573	MsaT030367.1:CDS
TAGTGTGAGCGGGAGGAAAA+AGG	0.267324	6:+6983820	None:intergenic
GGTAGAAAGTGTTAGGGATT+TGG	0.286024	6:-6984081	MsaT030367.1:CDS
GCACGGTCTGTCCATGTCTT+TGG	0.290233	6:+6981372	None:intergenic
CAAAAGACAACCTCAACTAT+TGG	0.292015	6:-6981346	MsaT030367.1:CDS
TACCTTCACGGAATATAAAA+AGG	0.292325	6:+6982503	None:intergenic
TCAACATTCCAGAGCAAAAT+AGG	0.293006	6:+6983507	None:intergenic
AGACGTTCATATTGTCGTTC+TGG	0.296095	6:-6984242	MsaT030367.1:CDS
TGCGTTTCCACATAAGATTC+AGG	0.320950	6:-6984375	MsaT030367.1:CDS
AGAAGATAAAACCAAGATAT+CGG	0.329241	6:-6977863	MsaT030367.1:CDS
GAATATCGAATGTAGCTTAA+AGG	0.330400	6:-6977826	MsaT030367.1:CDS
ACATGTTGGTAGAAAGTGTT+AGG	0.342505	6:-6984088	MsaT030367.1:CDS
TCACAAAGTATTCTCAATTT+GGG	0.343251	6:-6984316	MsaT030367.1:CDS
ATTGAGTTCCTTAGGAGAAT+TGG	0.350307	6:-6978435	MsaT030367.1:CDS
ATGTCAGACACAAGTAGTTC+TGG	0.365444	6:+6978372	None:intergenic
AGAGCAAGATTGAGTTCCTT+AGG	0.365560	6:-6978443	MsaT030367.1:CDS
TAATCACATCTCATCTATAC+TGG	0.369786	6:-6983592	MsaT030367.1:CDS
TTCTAAAGCTTACATTCCTT+TGG	0.370275	6:-6978409	MsaT030367.1:CDS
TGGATATTCTCCAAAATATT+GGG	0.384384	6:-6983572	MsaT030367.1:CDS
TCGCATCCCCAACATAATAT+TGG	0.384825	6:-6983538	MsaT030367.1:CDS
GGAAAAGCCAATATTATGTT+GGG	0.385050	6:+6983531	None:intergenic
AAATACCTGTAGAAAGTCTT+CGG	0.386329	6:+6981209	None:intergenic
CATATTGTCGTTCTGGGATG+AGG	0.397363	6:-6984235	MsaT030367.1:CDS
AAGCATTCAAGAGAACTATA+AGG	0.404306	6:-6982535	MsaT030367.1:CDS
GAATTTGCTGCTGAATTTAT+GGG	0.409909	6:-6977780	MsaT030367.1:CDS
GACGTTCATATTGTCGTTCT+GGG	0.411201	6:-6984241	MsaT030367.1:CDS
AATACCTGTAGAAAGTCTTC+GGG	0.414049	6:+6981210	None:intergenic
CCTTTCAGAACCCGATATCT+TGG	0.415637	6:+6977852	None:intergenic
TCACTTCTCTTCTTCCATGC+TGG	0.415823	6:-6984057	MsaT030367.1:CDS
AAAAGACAACCTCAACTATT+GGG	0.416730	6:-6981345	MsaT030367.1:CDS
TTGAGAATACTTTGTGAAAG+TGG	0.428065	6:+6984322	None:intergenic
AACTAGCAAGCTGAAGTTGA+TGG	0.435075	6:-6981316	MsaT030367.1:CDS
AGAAAGCAATTGGTGTGAAT+TGG	0.437050	6:+6984413	None:intergenic
TCTACTTGGGTACAGCATAA+AGG	0.438005	6:-6977985	MsaT030367.1:CDS
ACTCCTTCAAACTAGAGTTC+TGG	0.442934	6:-6983484	MsaT030367.1:CDS
TCAACTTGAACTTTAACTAC+AGG	0.444635	6:-6984007	MsaT030367.1:CDS
GTTATGTTCTTTGAAAATAT+GGG	0.445605	6:-6978543	MsaT030367.1:CDS
TTTCCTCTGAACTCCTAGTT+CGG	0.462041	6:+6981281	None:intergenic
GGGACACAGTAGTCTCTGAT+TGG	0.463347	6:-6984214	MsaT030367.1:CDS
AGGCCAGAACTCTAGTTTGA+AGG	0.466029	6:+6983481	None:intergenic
TGCTATTGATTCGGATTCCT+CGG	0.469322	6:+6984133	None:intergenic
GCTGCTGAATTTATGGGTGT+TGG	0.474476	6:-6977774	MsaT030367.1:CDS
GACAAGTGGAAGAAAGCAAT+TGG	0.476718	6:+6984403	None:intergenic
AATTTGGCGTACCTGGTTCA+AGG	0.477280	6:+6983461	None:intergenic
TGAGTTTGATGCTATTGATT+CGG	0.480221	6:+6984124	None:intergenic
GAAGATAAAACCAAGATATC+GGG	0.481026	6:-6977862	MsaT030367.1:CDS
AGGAAAAGCCAATATTATGT+TGG	0.485798	6:+6983530	None:intergenic
AGTCTCTGATTGGGAACTGC+AGG	0.486091	6:-6984204	MsaT030367.1:CDS
ATGTTGGGGATGCGATCTGC+GGG	0.490612	6:+6983546	None:intergenic
TGAGAATACTTTGTGAAAGT+GGG	0.493211	6:+6984323	None:intergenic
GAAATGATTCAATGAAGAAA+CGG	0.495067	6:+6983640	None:intergenic
CATTCTAGGTTCCAAAGACA+TGG	0.510075	6:-6981383	MsaT030367.1:intron
CGAACATCCTGAATCTTATG+TGG	0.510176	6:+6984368	None:intergenic
ACACTACAATCATACCTTCA+CGG	0.512801	6:+6982491	None:intergenic
CATCTAGTGAAATTGATAAG+TGG	0.514953	6:+6983751	None:intergenic
ATCTAGTGAAATTGATAAGT+GGG	0.520056	6:+6983752	None:intergenic
AGTGAATAGCTAAAATACCT+AGG	0.521625	6:+6977891	None:intergenic
CAGCTTATCATGTGAAGACA+AGG	0.524806	6:+6977731	None:intergenic
TAGAAACACCAATTCTCCTA+AGG	0.525753	6:+6978427	None:intergenic
CTAGCTTACTTAGAGAGTCT+CGG	0.531011	6:-6983939	MsaT030367.1:CDS
ACAAATGGGTGTGTCGGCCG+AGG	0.532280	6:-6984150	MsaT030367.1:CDS
GGACACAGTAGTCTCTGATT+GGG	0.532317	6:-6984213	MsaT030367.1:CDS
CTTCCTCAATGAATGTCGCC+AGG	0.535977	6:-6983905	MsaT030367.1:CDS
GTAGATCAGTTTGCCGAACT+AGG	0.537040	6:-6981294	MsaT030367.1:CDS
TCTTCAACAAATGGGTGTGT+CGG	0.540277	6:-6984156	MsaT030367.1:CDS
ACCAACATGTTGAGATATGC+TGG	0.540717	6:+6984101	None:intergenic
ATAACAATACCGTTGAGGTA+AGG	0.541814	6:+6978341	None:intergenic
TGAGGCGAATATTCTTGATA+AGG	0.543511	6:+6983781	None:intergenic
GATGCTAATGCTAATGATGT+TGG	0.543989	6:-6984035	MsaT030367.1:CDS
TAACTTTGTTAATGAGAGAC+GGG	0.545763	6:+6983859	None:intergenic
ATGTAGCTTAAAGGATATGC+TGG	0.546025	6:-6977817	MsaT030367.1:CDS
TAGAGTTCTGGCCTTGAACC+AGG	0.547091	6:-6983472	MsaT030367.1:intron
CAACTTGAACTTTAACTACA+GGG	0.547829	6:-6984006	MsaT030367.1:CDS
GTAACTTTGTTAATGAGAGA+CGG	0.550712	6:+6983858	None:intergenic
CTTCACATTGCAGCTCTCAA+AGG	0.551295	6:-6983975	MsaT030367.1:CDS
ATAGTGTACTTTATGAAGCT+AGG	0.563671	6:-6978053	MsaT030367.1:CDS
TGATGAGTAGTGTGAGCGGG+AGG	0.570194	6:+6983813	None:intergenic
TAGTGATGAGTAGTGTGAGC+GGG	0.571600	6:+6983810	None:intergenic
GATATCGGGTTCTGAAAGGA+AGG	0.571698	6:-6977848	MsaT030367.1:CDS
CCAAGATATCGGGTTCTGAA+AGG	0.573170	6:-6977852	MsaT030367.1:CDS
GTGAATAGCTAAAATACCTA+GGG	0.575252	6:+6977892	None:intergenic
CATGTTGGTAGAAAGTGTTA+GGG	0.576782	6:-6984087	MsaT030367.1:CDS
GGATACTTTCTGATAACCAA+AGG	0.580282	6:+6978393	None:intergenic
ATATTGTCGTTCTGGGATGA+GGG	0.584409	6:-6984234	MsaT030367.1:CDS
GTTGAACAACCCAATAGTTG+AGG	0.591010	6:+6981336	None:intergenic
TTCTGGTGAACTCAATGAAG+AGG	0.597466	6:-6977938	MsaT030367.1:CDS
TTAACAAAACCTTACCTCAA+CGG	0.600806	6:-6978350	MsaT030367.1:intron
AGACGGGAGGGTGTCAGCGG+AGG	0.601376	6:+6983875	None:intergenic
GAAGCCCGAAGACTTTCTAC+AGG	0.604401	6:-6981214	MsaT030367.1:intron
GGTGAACTCAATGAAGAGGC+CGG	0.608350	6:-6977934	MsaT030367.1:CDS
TTGATAAGTGGGTCATGATG+AGG	0.611276	6:+6983763	None:intergenic
GAAGCTAGGACTTTCAGAGA+AGG	0.613527	6:-6978039	MsaT030367.1:CDS
TATGTTGGGGATGCGATCTG+CGG	0.616027	6:+6983545	None:intergenic
TGTTGATGCTAAAATATCCG+TGG	0.618761	6:-6982569	MsaT030367.1:CDS
TTTGTTAATGAGAGACGGGA+GGG	0.619589	6:+6983863	None:intergenic
GAGAGACGGGAGGGTGTCAG+CGG	0.621038	6:+6983872	None:intergenic
GAAAAGGTTCAAGCAAGGCG+TGG	0.622427	6:-6983699	MsaT030367.1:CDS
GAAGAGGCCGGTACGAGACG+TGG	0.624003	6:-6977922	MsaT030367.1:CDS
TAGCTCACCACGTCTCGTAC+CGG	0.626755	6:+6977915	None:intergenic
TTGCCGAACTAGGAGTTCAG+AGG	0.629209	6:-6981284	MsaT030367.1:CDS
GAGAATACTTTGTGAAAGTG+GGG	0.630001	6:+6984324	None:intergenic
GAAAAGCCAATATTATGTTG+GGG	0.630240	6:+6983532	None:intergenic
GTTGATGCTAAAATATCCGT+GGG	0.632158	6:-6982568	MsaT030367.1:CDS
ACCAGCATATCTCAACATGT+TGG	0.632521	6:-6984102	MsaT030367.1:CDS
GAGACGTGGTGAGCTACCCT+AGG	0.632788	6:-6977908	MsaT030367.1:CDS
GTCAGCGGAGGATATATACC+TGG	0.634286	6:+6983887	None:intergenic
ATTAGCATTAGCATCCAGCA+TGG	0.634999	6:+6984043	None:intergenic
TCTGATTGGGAACTGCAGGA+AGG	0.638520	6:-6984200	MsaT030367.1:CDS
GGCTTCTGTAATAATAGCTG+AGG	0.649008	6:+6981231	None:intergenic
ATACCTGGCGACATTCATTG+AGG	0.650039	6:+6983902	None:intergenic
TTTATGCTGTACCCAAGTAG+AGG	0.651825	6:+6977987	None:intergenic
ACATTCCAGAGCAAAATAGG+AGG	0.652429	6:+6983510	None:intergenic
CTTTGTTAATGAGAGACGGG+AGG	0.652659	6:+6983862	None:intergenic
GAATCATAACAATACCGTTG+AGG	0.666417	6:+6978336	None:intergenic
GCAGCTCTCAAAGGTGACAA+CGG	0.668388	6:-6983966	MsaT030367.1:CDS
AAGGTTCAAGCAAGGCGTGG+AGG	0.673259	6:-6983696	MsaT030367.1:CDS
AAGCAGCATCTTGAGAAGCG+AGG	0.673782	6:+6983664	None:intergenic
GGAAACGCAGCATAGACAAG+TGG	0.684763	6:+6984389	None:intergenic
ATAGTGATGAGTAGTGTGAG+CGG	0.686698	6:+6983809	None:intergenic
CATTCAAGAGAACTATAAGG+AGG	0.687484	6:-6982532	MsaT030367.1:CDS
AGCTTATCATGTGAAGACAA+GGG	0.692707	6:+6977732	None:intergenic
ACTTGGGTACAGCATAAAGG+AGG	0.694799	6:-6977982	MsaT030367.1:CDS
ATGCTTGTAGATAGAACCCA+CGG	0.695925	6:+6982552	None:intergenic
TGTTGGGGATGCGATCTGCG+GGG	0.717165	6:+6983547	None:intergenic
AGTGATAACAAAAGTATACG+AGG	0.730910	6:+6983618	None:intergenic
TTATCATGTGAAGACAAGGG+AGG	0.739674	6:+6977735	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	6977728	6984444	6977728	ID=MsaG030367
Chr6	mRNA	6977728	6984444	6977728	ID=MsaT030367.1;Parent=MsaG030367
Chr6	exon	6977728	6978076	6977728	ID=MsaT030367.1.exon5;Parent=MsaT030367.1
Chr6	CDS	6977728	6978076	6977728	ID=cds.MsaT030367.1;Parent=MsaT030367.1
Chr6	exon	6978351	6978568	6978351	ID=MsaT030367.1.exon4;Parent=MsaT030367.1
Chr6	CDS	6978351	6978568	6978351	ID=cds.MsaT030367.1;Parent=MsaT030367.1
Chr6	exon	6981215	6981397	6981215	ID=MsaT030367.1.exon3;Parent=MsaT030367.1
Chr6	CDS	6981215	6981397	6981215	ID=cds.MsaT030367.1;Parent=MsaT030367.1
Chr6	exon	6982506	6982619	6982506	ID=MsaT030367.1.exon2;Parent=MsaT030367.1
Chr6	CDS	6982506	6982619	6982506	ID=cds.MsaT030367.1;Parent=MsaT030367.1
Chr6	exon	6983473	6984444	6983473	ID=MsaT030367.1.exon1;Parent=MsaT030367.1
Chr6	CDS	6983473	6984444	6983473	ID=cds.MsaT030367.1;Parent=MsaT030367.1

Gene Sequence

>MsaT030367.1

ATGTTGCTTCCAATTCACACCAATTGCTTTCTTCCACTTGTCTATGCTGCGTTTCCACATAAGATTCAGGATGTTCGTTTTGCGGTGAACAACTGCGTCCCCACTTTCACAAAGTATTCTCAATTTGGGATTCATTATTCTTATTATTATCATCATACAACAACAACAACAACAAGAAGAAGACGTTCATATTGTCGTTCTGGGATGAGGGACACAGTAGTCTCTGATTGGGAACTGCAGGAAGGTCGAATCGCAGTTTCAACTTTTCTTCAACAAATGGGTGTGTCGGCCGAGGAATCCGAATCAATAGCATCAAACTCACCAGCATATCTCAACATGTTGGTAGAAAGTGTTAGGGATTTGGATCACTTCTCTTCTTCCATGCTGGATGCTAATGCTAATGATGTTGGTGTGTTCAACTTGAACTTTAACTACAGGGACAAGATTCTTCACATTGCAGCTCTCAAAGGTGACAACGGCAAACTAGCTTACTTAGAGAGTCTCGGCTTCACACTCTCTTCCTCAATGAATGTCGCCAGGTATATATCCTCCGCTGACACCCTCCCGTCTCTCATTAACAAAGTTACCTCTATCAAACAACTCCTTTTTCCTCCCGCTCACACTACTCATCACTATCAACTCCTTATCAAGAATATTCGCCTCATCATGACCCACTTATCAATTTCACTAGATGAAGATATGCAACACACTTTCTCCTTTTTCGAAAAGGTTCAAGCAAGGCGTGGAGGTTTAAATATCCTCGCTTCTCAAGATGCTGCTTTCCGTTTCTTCATTGAATCATTTCCTCGTATACTTTTGTTATCACTAAATAATCACATCTCATCTATACTGGATATTCTCCAAAATATTGGGATCCCCGCAGATCGCATCCCCAACATAATATTGGCTTTTCCTCCTATTTTGCTCTGGAATGTTGAACTCCTTCAAACTAGAGTTCTGGCCTTGAACCAGATTGACGGTGTGGATAAAGATTATGCCATGTTGATGCTAAAATATCCGTGGGTTCTATCTACAAGCATTCAAGAGAACTATAAGGAGGTCCTTGCCTTTTTATATTCCGTGAAGGTTCCAAAGACATGGACAGACCGTGCAATCAAAAGACAACCTCAACTATTGGGTTGTTCAACTAGCAAGCTGAAGTTGATGGTAGATCAGTTTGCCGAACTAGGAGTTCAGAGGAAAAAGTTGTATCAGGTTATCACTAGAAGTCCTCAGCTATTATTACAGAAGCCCGAAGACTTTCTACAGGTTGTTATGTTCTTTGAAAATATGGGTTTTGATAAAGAAAATATTGGGAGAATACTTGCTCGCTGCCCTGAAATTTTTGCCACCAGCATTAGTAAAACTTTACAGAGCAAGATTGAGTTCCTTAGGAGAATTGGTGTTTCTAAAGCTTACATTCCTTTGGTTATCAGAAAGTATCCAGAACTACTTGTGTCTGACATTAACAAAACCTTACCTCAACGGATAGTGTACTTTATGAAGCTAGGACTTTCAGAGAAGGAAATTGCATTTATGGTACGTACATTTTCTCCTCTACTTGGGTACAGCATAAAGGAGGTTCTGATGCCAAAATTAGAATTTCTGGTGAACTCAATGAAGAGGCCGGTACGAGACGTGGTGAGCTACCCTAGGTATTTTAGCTATTCACTAGAAAAGAAGATAAAACCAAGATATCGGGTTCTGAAAGGAAGGAATATCGAATGTAGCTTAAAGGATATGCTGGCAAAAAGTGATGAAGAATTTGCTGCTGAATTTATGGGTGTTGGAAAGATGCTCGTCTGTCCTCCCTTGTCTTCACATGATAAGCTGTAA

Protein sequence

>MsaT030367.1

MLLPIHTNCFLPLVYAAFPHKIQDVRFAVNNCVPTFTKYSQFGIHYSYYYHHTTTTTTRRRRSYCRSGMRDTVVSDWELQEGRIAVSTFLQQMGVSAEESESIASNSPAYLNMLVESVRDLDHFSSSMLDANANDVGVFNLNFNYRDKILHIAALKGDNGKLAYLESLGFTLSSSMNVARYISSADTLPSLINKVTSIKQLLFPPAHTTHHYQLLIKNIRLIMTHLSISLDEDMQHTFSFFEKVQARRGGLNILASQDAAFRFFIESFPRILLLSLNNHISSILDILQNIGIPADRIPNIILAFPPILLWNVELLQTRVLALNQIDGVDKDYAMLMLKYPWVLSTSIQENYKEVLAFLYSVKVPKTWTDRAIKRQPQLLGCSTSKLKLMVDQFAELGVQRKKLYQVITRSPQLLLQKPEDFLQVVMFFENMGFDKENIGRILARCPEIFATSISKTLQSKIEFLRRIGVSKAYIPLVIRKYPELLVSDINKTLPQRIVYFMKLGLSEKEIAFMVRTFSPLLGYSIKEVLMPKLEFLVNSMKRPVRDVVSYPRYFSYSLEKKIKPRYRVLKGRNIECSLKDMLAKSDEEFAAEFMGVGKMLVCPPLSSHDKL*