AlfalfaGEDB | MsaG030436

M. sativa ssp. caerulea / MsaG030436

KEGG: -
GO: -
PFAM: PF04504.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030436	tr\|A0A392QAS1\|A0A392QAS1_9FABA	38.849	139	77	3	32	163	16	153	5.34e-14	75.9

TFs/TRs:

Gene ID	Type	Classification
MsaG030436	TF	GeBP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000370	MsaG030436	0.900704	1.295031e-77	6.908228e-74
MsaG000977	MsaG030436	0.853373	4.795150e-61	2.923367e-58
MsaG001878	MsaG030436	0.826775	4.017089e-54	1.061459e-51
MsaG002225	MsaG030436	0.829090	1.120971e-54	3.160721e-52
MsaG003567	MsaG030436	0.813584	4.098086e-51	7.645129e-49
MsaG004100	MsaG030436	0.855313	1.327592e-61	8.674221e-59
MsaG004514	MsaG030436	0.850879	2.434829e-60	1.360272e-57
MsaG004531	MsaG030436	0.818352	3.576456e-52	7.532802e-50
MsaG004563	MsaG030436	0.858601	1.439748e-62	1.061756e-59
MsaG004753	MsaG030436	0.880294	1.305548e-69	2.388395e-66
MsaG004930	MsaG030436	0.819465	2.002526e-52	4.342519e-50
MsaG005006	MsaG030436	0.811941	9.343749e-51	1.673289e-48
MsaG005295	MsaG030436	0.848432	1.165045e-59	5.985562e-57
MsaG005297	MsaG030436	0.814689	2.343274e-51	4.494288e-49
MsaG005924	MsaG030436	0.872214	7.742440e-67	9.859352e-64
MsaG006314	MsaG030436	0.849641	5.396201e-60	2.889296e-57
MsaG006378	MsaG030436	0.800880	1.960040e-48	2.703241e-46
MsaG006465	MsaG030436	0.812315	7.749555e-51	1.400612e-48
MsaG006748	MsaG030436	0.817262	6.284282e-52	1.287018e-49
MsaG006757	MsaG030436	0.842252	5.386837e-58	2.258103e-55
MsaG006869	MsaG030436	0.815014	1.986504e-51	3.841498e-49
MsaG007092	MsaG030436	0.806209	1.557344e-49	2.428918e-47
MsaG007255	MsaG030436	0.834645	4.838889e-56	1.603791e-53
MsaG007551	MsaG030436	0.825089	1.005730e-53	2.536131e-51
MsaG007917	MsaG030436	0.822812	3.418830e-53	8.103989e-51
MsaG008109	MsaG030436	0.846781	3.298899e-59	1.603682e-56
MsaG009688	MsaG030436	0.874936	9.468037e-68	1.357858e-64
MsaG010065	MsaG030436	0.862579	9.087006e-64	7.801240e-61
MsaG010949	MsaG030436	0.894169	7.104469e-75	2.615808e-71
MsaG011531	MsaG030436	0.826186	5.542675e-54	1.440801e-51
MsaG011816	MsaG030436	0.903583	6.984885e-79	4.419163e-75
MsaG012163	MsaG030436	0.872777	5.029983e-67	6.562060e-64
MsaG012333	MsaG030436	0.863971	3.384107e-64	3.068632e-61
MsaG012282	MsaG030436	0.801764	1.294976e-48	1.822104e-46
MsaG012449	MsaG030436	0.850559	2.993594e-60	1.654001e-57
MsaG043755	MsaG030436	0.862721	8.217799e-64	7.093916e-61
MsaG044337	MsaG030436	0.893668	1.133105e-74	4.060325e-71
MsaG045493	MsaG030436	0.818089	4.098325e-52	8.573691e-50
MsaG045598	MsaG030436	0.864487	2.340091e-64	2.166011e-61
MsaG045816	MsaG030436	0.874248	1.617480e-67	2.250630e-64
MsaG045830	MsaG030436	0.802789	7.981593e-49	1.149674e-46
MsaG046244	MsaG030436	0.883144	1.228880e-70	2.573177e-67
MsaG046155	MsaG030436	0.862798	7.784633e-64	6.740764e-61
MsaG046419	MsaG030436	0.868373	1.384570e-65	1.499838e-62
MsaG046538	MsaG030436	0.901028	9.368327e-78	5.091813e-74
MsaG046436	MsaG030436	0.808312	5.609798e-50	9.197798e-48
MsaG046443	MsaG030436	0.818434	3.427046e-52	7.233459e-50
MsaG046696	MsaG030436	0.806477	1.368084e-49	2.147312e-47
MsaG047031	MsaG030436	0.858047	2.101963e-62	1.518387e-59
MsaG002256	MsaG030436	0.842566	4.450549e-58	1.884715e-55
MsaG001975	MsaG030436	0.821152	8.253036e-53	1.871422e-50
MsaG002349	MsaG030436	0.822583	3.863514e-53	9.101408e-51
MsaG001555	MsaG030436	0.841149	1.049461e-57	4.247725e-55
MsaG008445	MsaG030436	0.819870	1.619818e-52	3.550230e-50
MsaG012729	MsaG030436	0.816720	8.307582e-52	1.677705e-49
MsaG011732	MsaG030436	0.849842	4.742147e-60	2.556291e-57
MsaG020181	MsaG030436	0.846669	3.538508e-59	1.713588e-56
MsaG030537	MsaG030436	0.919304	1.355891e-86	2.425966e-82
MsaG030572	MsaG030436	0.913765	1.038968e-83	1.261679e-79
MsaG031242	MsaG030436	0.866727	4.636009e-65	4.695600e-62
MsaG030436	MsaG033422	0.871508	1.323978e-66	1.635678e-63
MsaG030436	MsaG031301	0.930915	2.238713e-93	9.806039e-89
MsaG030436	MsaG030744	0.828599	1.471983e-54	4.093643e-52
MsaG030436	MsaG031710	0.859173	9.729747e-63	7.330684e-60
MsaG030436	MsaG036926	0.807488	8.382301e-50	1.347426e-47
MsaG030436	MsaG036646	0.867210	3.259192e-65	3.366312e-62
MsaG030436	MsaG035322	0.851011	2.235560e-60	1.254584e-57
MsaG030436	MsaG037135	0.802043	1.135179e-48	1.607455e-46
MsaG030436	MsaG043492	0.840464	1.583696e-57	6.273099e-55
MsaG015721	MsaG030436	0.863083	6.363662e-64	5.572173e-61
MsaG016153	MsaG030436	0.908660	3.217407e-81	2.788528e-77
MsaG016248	MsaG030436	0.834535	5.155443e-56	1.703057e-53
MsaG016290	MsaG030436	0.810632	1.791853e-50	3.107470e-48
MsaG017318	MsaG030436	0.826504	4.659377e-54	1.221981e-51
MsaG017397	MsaG030436	0.870642	2.548358e-66	3.033816e-63
MsaG018025	MsaG030436	0.815422	1.614269e-51	3.154041e-49
MsaG018078	MsaG030436	0.824567	1.333445e-53	3.314874e-51
MsaG018582	MsaG030436	0.816262	1.050491e-51	2.096778e-49
MsaG018602	MsaG030436	0.840197	1.858145e-57	7.298618e-55
MsaG018631	MsaG030436	0.840862	1.247111e-57	5.001856e-55
MsaG018701	MsaG030436	0.834226	6.158173e-56	2.015513e-53
MsaG018714	MsaG030436	0.850460	3.189312e-60	1.756074e-57
MsaG018743	MsaG030436	0.801434	1.511915e-48	2.111512e-46
MsaG018986	MsaG030436	0.912981	2.563696e-83	2.949757e-79
MsaG019439	MsaG030436	0.890807	1.556714e-73	4.785042e-70
MsaG019714	MsaG030436	0.863225	5.752645e-64	5.064938e-61
MsaG019728	MsaG030436	0.840464	1.583576e-57	6.272650e-55
MsaG019770	MsaG030436	0.916546	3.918679e-85	5.757095e-81
MsaG019974	MsaG030436	0.824830	1.156789e-53	2.896450e-51
MsaG020336	MsaG030436	0.832001	2.190407e-55	6.716655e-53
MsaG020838	MsaG030436	0.801185	1.699095e-48	2.359545e-46
MsaG021523	MsaG030436	0.861134	2.503727e-63	2.032409e-60
MsaG021703	MsaG030436	0.878202	7.123850e-69	1.183490e-65
MsaG023694	MsaG030436	0.855345	1.299605e-61	8.501018e-59
MsaG024094	MsaG030436	0.825418	8.412159e-54	2.140532e-51
MsaG024106	MsaG030436	0.900151	2.246510e-77	1.159825e-73
MsaG024772	MsaG030436	0.827620	2.526815e-54	6.836646e-52
MsaG026607	MsaG030436	0.853616	4.087452e-61	2.513269e-58
MsaG027083	MsaG030436	0.800349	2.511816e-48	3.423045e-46
MsaG027138	MsaG030436	0.885746	1.346175e-71	3.198276e-68
MsaG027514	MsaG030436	0.826129	5.714922e-54	1.483313e-51
MsaG027591	MsaG030436	0.909140	1.905048e-81	1.702996e-77
MsaG028119	MsaG030436	0.881998	3.202873e-70	6.347613e-67
MsaG028877	MsaG030436	0.838612	4.772974e-57	1.784141e-54
MsaG029250	MsaG030436	0.826437	4.831533e-54	1.264814e-51
MsaG029672	MsaG030436	0.820841	9.726125e-53	2.187155e-50
MsaG030112	MsaG030436	0.804451	3.621866e-49	5.421483e-47
MsaG031088	MsaG030436	0.837271	1.051262e-56	3.770292e-54
MsaG032434	MsaG030436	0.861470	1.980766e-63	1.628709e-60
MsaG032689	MsaG030436	0.888834	9.081498e-73	2.519198e-69
MsaG032839	MsaG030436	0.843999	1.852950e-58	8.215175e-56
MsaG033534	MsaG030436	0.845826	5.988563e-59	2.819901e-56
MsaG033991	MsaG030436	0.831739	2.540167e-55	7.730151e-53
MsaG034824	MsaG030436	0.865679	9.929170e-65	9.637927e-62
MsaG035363	MsaG030436	0.830499	5.105698e-55	1.498775e-52
MsaG035539	MsaG030436	0.890691	1.727886e-73	5.279702e-70
MsaG035884	MsaG030436	0.881383	5.330020e-70	1.026116e-66
MsaG036045	MsaG030436	0.817271	6.255109e-52	1.281343e-49
MsaG038332	MsaG030436	0.855865	9.176581e-62	6.116671e-59
MsaG038393	MsaG030436	0.821096	8.504521e-53	1.925484e-50
MsaG038518	MsaG030436	0.839371	3.041402e-57	1.164027e-54
MsaG039895	MsaG030436	0.856779	4.964239e-62	3.421493e-59
MsaG040713	MsaG030436	0.886373	7.838227e-72	1.920919e-68
MsaG041237	MsaG030436	0.850784	2.589037e-60	1.441621e-57

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030436	MtrunA17_Chr3g0113131	31.646	158	94	4	28	174	146	300	3.33e-13	66.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 38 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTTGATGTTTGCTTCTTTA+AGG	0.138534	6:+7581100	None:intergenic
CTTAGATTTCAAATCCAATT+TGG	0.142363	6:-7581024	MsaT030436.1:CDS
TTTACCTTTCTCACAAGATT+TGG	0.226819	6:-7580815	MsaT030436.1:CDS
GAAGAGGGTTTCTCTTGTTT+TGG	0.245975	6:+7581125	None:intergenic
GGAGCGTGCACGGTTAATTA+AGG	0.290096	6:-7580706	MsaT030436.1:CDS
TCAAGAGCCGGAATTGGATT+TGG	0.301896	6:-7580727	MsaT030436.1:CDS
TTACCTTTCTCACAAGATTT+GGG	0.302378	6:-7580814	MsaT030436.1:CDS
TTTGGGGACAAGAGTTGATT+GGG	0.351467	6:-7580797	MsaT030436.1:CDS
GGCAGCTTAGAAAGAGGATA+TGG	0.353135	6:-7580926	MsaT030436.1:CDS
TTAGATTTCAAATCCAATTT+GGG	0.355655	6:-7581023	MsaT030436.1:CDS
GAAAGTTCAAGAGCCGGAAT+TGG	0.391991	6:-7580733	MsaT030436.1:CDS
ATTTGGGGACAAGAGTTGAT+TGG	0.406484	6:-7580798	MsaT030436.1:CDS
ACAAGAGTTGATTGGGGAAT+CGG	0.415419	6:-7580790	MsaT030436.1:CDS
GCACGCTCCAAATCCAATTC+CGG	0.440433	6:+7580720	None:intergenic
GTCCCCAAATCTTGTGAGAA+AGG	0.458776	6:+7580811	None:intergenic
TCAAGATCATTATAGAATCT+AGG	0.460182	6:+7580849	None:intergenic
CTAAGAAGCCATTGAGAATG+AGG	0.476463	6:+7581042	None:intergenic
ATCCTCTTTCTAAGCTGCCC+TGG	0.495595	6:+7580930	None:intergenic
ATATGAGAACATGAAGAAAG+AGG	0.508111	6:-7580889	MsaT030436.1:CDS
CTTTCTAAGCTGCCCTGGTG+TGG	0.513545	6:+7580935	None:intergenic
GTCATTTCTAAGTTATTGCA+AGG	0.515777	6:-7580672	MsaT030436.1:CDS
ATTCTATAATGATCTTGAGC+AGG	0.520209	6:-7580844	MsaT030436.1:CDS
GACGAAATCCTCATTCTCAA+TGG	0.536241	6:-7581050	MsaT030436.1:CDS
GGATAGAGTTGGATGAAATG+TGG	0.536445	6:-7580764	MsaT030436.1:CDS
AATTGGATTTGGAGCGTGCA+CGG	0.556576	6:-7580716	MsaT030436.1:CDS
GGAATTGAAAGTTCAAGAGC+CGG	0.565005	6:-7580739	MsaT030436.1:CDS
CTTACTGTGAAAACCACACC+AGG	0.566823	6:-7580948	MsaT030436.1:CDS
TGCTTCTTTAAGGAAGAAGA+GGG	0.572401	6:+7581110	None:intergenic
CACCAGGGCAGCTTAGAAAG+AGG	0.573849	6:-7580932	MsaT030436.1:CDS
TACCTTTCTCACAAGATTTG+GGG	0.576919	6:-7580813	MsaT030436.1:CDS
TTGGGGACAAGAGTTGATTG+GGG	0.578511	6:-7580796	MsaT030436.1:CDS
TTGCTTCTTTAAGGAAGAAG+AGG	0.590446	6:+7581109	None:intergenic
AGAGTTGGATGAAATGTGGA+AGG	0.591400	6:-7580760	MsaT030436.1:CDS
GGAATCGGATCGGATAGAGT+TGG	0.604264	6:-7580775	MsaT030436.1:CDS
GATTTCGTCATCGAAAGTGA+AGG	0.605806	6:+7581064	None:intergenic
AGTTGATTGGGGAATCGGAT+CGG	0.606498	6:-7580785	MsaT030436.1:CDS
AGATCATTATAGAATCTAGG+AGG	0.675424	6:+7580852	None:intergenic
TTACTGTGAAAACCACACCA+GGG	0.799910	6:-7580947	MsaT030436.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	7580656	7581186	7580656	ID=MsaG030436
Chr6	mRNA	7580656	7581186	7580656	ID=MsaT030436.1;Parent=MsaG030436
Chr6	exon	7580656	7581186	7580656	ID=MsaT030436.1.exon1;Parent=MsaT030436.1
Chr6	CDS	7580656	7581186	7580656	ID=cds.MsaT030436.1;Parent=MsaT030436.1

Gene Sequence

>MsaT030436.1

ATGGCAAAGAAATCAAGTTGTTCTTCTTCATCCCAAAATCCAAAACAAGAGAAACCCTCTTCTTCCTTAAAGAAGCAAACATCAAACTCACGTAAGAAAACCTTCACTTTCGATGACGAAATCCTCATTCTCAATGGCTTCTTAGATTTCAAATCCAATTTGGGTCAAAATGCAATGACAGATTACACACTTTTTTATAACTCTGTGAAAGATTTGCTTACTGTGAAAACCACACCAGGGCAGCTTAGAAAGAGGATATGGAAGTTAAAACAAAAATATGAGAACATGAAGAAAGAGGAAAACCAAAAATTTCCTCCTAGATTCTATAATGATCTTGAGCAGGAAATAATTTACCTTTCTCACAAGATTTGGGGACAAGAGTTGATTGGGGAATCGGATCGGATAGAGTTGGATGAAATGTGGAAGGAATTGAAAGTTCAAGAGCCGGAATTGGATTTGGAGCGTGCACGGTTAATTAAGGACTCGATTGACGTCATTTCTAAGTTATTGCAAGGATCATCTTCGTCTTAG

Protein sequence

>MsaT030436.1

MAKKSSCSSSSQNPKQEKPSSSLKKQTSNSRKKTFTFDDEILILNGFLDFKSNLGQNAMTDYTLFYNSVKDLLTVKTTPGQLRKRIWKLKQKYENMKKEENQKFPPRFYNDLEQEIIYLSHKIWGQELIGESDRIELDEMWKELKVQEPELDLERARLIKDSIDVISKLLQGSSSS*