AlfalfaGEDB | MsaG030467

M. sativa ssp. caerulea / MsaG030467

KEGG: K21630
GO: -
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030467	sp\|O82632\|GATA9_ARATH	45.652	184	44	8	14	197	136	263	2.05e-36	132

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030467	tr\|G7KQ55\|G7KQ55_MEDTR	92.000	200	4	2	1	200	74	261	9.58e-129	372

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TFs/TRs:

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Gene ID	Type	Classification
MsaG030467	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG005367	MsaG030467	0.827246	3.103460e-54	8.309039e-52
MsaG007176	MsaG030467	0.800309	2.559420e-48	3.484669e-46
MsaG007848	MsaG030467	0.824059	1.753707e-53	4.299665e-51
MsaG007852	MsaG030467	0.849288	6.757713e-60	3.574741e-57
MsaG008287	MsaG030467	0.826556	4.528240e-54	1.189242e-51
MsaG011294	MsaG030467	0.825754	7.012002e-54	1.800945e-51
MsaG015386	MsaG030467	0.800543	2.294490e-48	3.140615e-46
MsaG022789	MsaG030467	0.807315	9.118102e-50	1.459641e-47
MsaG025778	MsaG030467	0.821234	7.904609e-53	1.796224e-50
MsaG027484	MsaG030467	0.802991	7.256450e-49	1.050097e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030467	MtrunA17_Chr6g0461591	92.000	200	4	2	1	200	74	261	1.84e-132	372
MsaG030467	MtrunA17_Chr7g0253101	58.049	205	48	7	1	199	84	256	4.12e-69	211
MsaG030467	MtrunA17_Chr4g0035891	81.538	65	12	0	131	195	211	275	1.01e-34	124
MsaG030467	MtrunA17_Chr1g0199671	80.000	65	13	0	131	195	242	306	3.25e-34	124
MsaG030467	MtrunA17_Chr1g0146231	77.612	67	15	0	131	197	234	300	6.68e-34	123
MsaG030467	MtrunA17_Chr2g0326771	77.143	70	16	0	131	200	216	285	7.30e-34	122
MsaG030467	MtrunA17_Chr8g0372291	73.333	75	18	1	121	195	210	282	9.90e-34	121
MsaG030467	MtrunA17_Chr8g0340401	73.913	69	18	0	129	197	224	292	1.92e-33	122
MsaG030467	MtrunA17_Chr1g0213161	70.270	74	22	0	123	196	144	217	2.21e-33	119
MsaG030467	MtrunA17_Chr3g0140331	68.750	80	20	1	118	197	245	319	8.75e-33	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030467	AT4G32890.1	45.652	184	44	8	14	197	136	263	2.09e-37	132
MsaG030467	AT3G60530.1	79.710	69	14	0	129	197	156	224	2.19e-36	127
MsaG030467	AT2G45050.1	41.989	181	59	3	17	197	111	245	1.24e-35	126
MsaG030467	AT5G25830.1	38.265	196	90	5	2	197	121	285	6.43e-35	126
MsaG030467	AT3G24050.1	75.000	68	17	0	130	197	193	260	2.07e-34	123
MsaG030467	AT3G54810.1	67.470	83	26	1	113	195	212	293	3.46e-33	121
MsaG030467	AT3G54810.2	67.470	83	26	1	113	195	212	293	3.46e-33	121
MsaG030467	AT5G66320.2	80.000	65	13	0	131	195	249	313	5.08e-33	121
MsaG030467	AT5G66320.1	80.000	65	13	0	131	195	249	313	5.08e-33	121
MsaG030467	AT3G51080.1	81.538	65	12	0	131	195	221	285	5.08e-33	120

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Find 34 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCTCTGCAGTTGCGTG+CGG	0.637759	6:-8347637	MsaT030467.1:CDS
AACATATTCCAAATGCAAGA+AGG	0.563153	6:-8347480	MsaT030467.1:CDS
AAGACACTATGCAATGCATG+TGG	0.764250	6:-8347400	MsaT030467.1:CDS
AAGCTTGTTTCAACAAAGGA+GGG	0.570788	6:+8347704	None:intergenic
AATGGTCCTGCCCTCCATTG+TGG	0.428822	6:+8347430	None:intergenic
ACAAAAGTAGGACTCTTCGC+TGG	0.624466	6:+8347337	None:intergenic
ACAAAGGACCCCACAATGGA+GGG	0.595325	6:-8347440	MsaT030467.1:CDS
ACAATGGAGGGCAGGACCAT+TGG	0.400380	6:-8347428	MsaT030467.1:CDS
AGAATGCAATCTATTAAGTA+GGG	0.572327	6:-8347271	None:intergenic
AGGACCCCACAATGGAGGGC+AGG	0.548944	6:-8347436	MsaT030467.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	8347273	8347875	8347273	ID=MsaG030467
Chr6	mRNA	8347273	8347875	8347273	ID=MsaT030467.1;Parent=MsaG030467
Chr6	exon	8347273	8347875	8347273	ID=MsaT030467.1.exon1;Parent=MsaT030467.1
Chr6	CDS	8347273	8347875	8347273	ID=cds.MsaT030467.1;Parent=MsaT030467.1

Gene Sequence

>MsaT030467.1

ATGCAAAAACCTCAACAACAAAATCAATCTTATTTGCAAAATTTTGTTGTTCCTGGAAAAGCAAGAAGCAAGAGAAAAAGACTTTCAGCTCCTAGTACCAAAATTTGGTCACATTCACATCTTATAAGTGATGGTAATTTGATTTCTGACCCTCCTTTGTTGAAACAAGCTTATTGGTTAGCCGACAGCGAACTCATTGCTCCGAAAAATGAGCAAAAAGTCTCTGCAGTTGCGTGCGGAGATCAGACAGAAGCAAAAAGAAGGGTGAAGAGAGTGGTAAAAATGGAGAAAGAGAAAGAGAGTTTTGAGGTTGGAATTATTCAAGTTAAGAATAGTGAGAATAATAATGATGATGTTAATGATGATGATGAGGAACATATTCCAAATGCAAGAAGGTGCACTCATTGTTTGTCACAAAGGACCCCACAATGGAGGGCAGGACCATTGGGACCAAAGACACTATGCAATGCATGTGGTGTGAGGTACAAGTCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCGAAGAGTCCTACTTTTGTTAGCTACTTGCATTCAAATTCACACAAGAAAGTTCTTGAGATGAGAATGCAATCTATTAAGTAG

Protein sequence

>MsaT030467.1

MQKPQQQNQSYLQNFVVPGKARSKRKRLSAPSTKIWSHSHLISDGNLISDPPLLKQAYWLADSELIAPKNEQKVSAVACGDQTEAKRRVKRVVKMEKEKESFEVGIIQVKNSENNNDDVNDDDEEHIPNARRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRMQSIK*