Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG030526 | sp|Q9SRV3|LBD20_ARATH | 67.785 | 149 | 43 | 1 | 39 | 187 | 50 | 193 | 3.24e-61 | 196 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG030526 | tr|A0A072U858|A0A072U858_MEDTR | 98.678 | 227 | 3 | 0 | 1 | 227 | 1 | 227 | 2.26e-164 | 462 |
Gene ID | Type | Classification |
---|---|---|
MsaG030526 | TF | LOB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG001233 | MsaG030526 | 0.813893 | 3.506593e-51 | 6.592622e-49 |
MsaG001374 | MsaG030526 | 0.807811 | 7.163738e-50 | 1.160522e-47 |
MsaG002298 | MsaG030526 | 0.802411 | 9.546006e-49 | 1.363206e-46 |
MsaG004298 | MsaG030526 | 0.815924 | 1.248978e-51 | 2.471588e-49 |
MsaG005256 | MsaG030526 | 0.811105 | 1.416693e-50 | 2.485479e-48 |
MsaG005776 | MsaG030526 | 0.809383 | 3.317984e-50 | 5.582316e-48 |
MsaG006644 | MsaG030526 | 0.815671 | 1.421302e-51 | 2.794644e-49 |
MsaG007718 | MsaG030526 | 0.822236 | 4.646953e-53 | 1.084500e-50 |
MsaG008537 | MsaG030526 | 0.809392 | 3.303499e-50 | 5.559209e-48 |
MsaG011565 | MsaG030526 | 0.809618 | 2.955597e-50 | 5.001095e-48 |
MsaG011589 | MsaG030526 | 0.825653 | 7.406137e-54 | 1.896835e-51 |
MsaG015330 | MsaG030526 | 0.805703 | 1.987735e-49 | 3.063258e-47 |
MsaG015993 | MsaG030526 | 0.809998 | 2.451498e-50 | 4.186266e-48 |
MsaG016448 | MsaG030526 | 0.802056 | 1.128627e-48 | 1.598639e-46 |
MsaG018150 | MsaG030526 | 0.826654 | 4.292180e-54 | 1.130341e-51 |
MsaG019543 | MsaG030526 | 0.804524 | 3.498883e-49 | 5.246245e-47 |
MsaG021888 | MsaG030526 | 0.806853 | 1.140984e-49 | 1.806653e-47 |
MsaG022263 | MsaG030526 | 0.802285 | 1.012710e-48 | 1.442029e-46 |
MsaG022706 | MsaG030526 | 0.801011 | 1.844016e-48 | 2.550736e-46 |
MsaG024877 | MsaG030526 | 0.811752 | 1.026973e-50 | 1.830517e-48 |
MsaG026826 | MsaG030526 | 0.801166 | 1.714149e-48 | 2.379452e-46 |
MsaG026901 | MsaG030526 | 0.803120 | 6.825749e-49 | 9.907268e-47 |
MsaG027293 | MsaG030526 | 0.812026 | 8.954161e-51 | 1.606837e-48 |
MsaG030451 | MsaG030526 | 0.805437 | 2.258788e-49 | 3.459354e-47 |
MsaG030526 | MsaG030914 | 0.813497 | 4.282091e-51 | 7.970792e-49 |
MsaG030526 | MsaG033589 | 0.828334 | 1.703989e-54 | 4.703730e-52 |
MsaG030526 | MsaG035263 | 0.817838 | 4.667259e-52 | 9.701046e-50 |
MsaG030526 | MsaG035467 | 0.816521 | 9.200693e-52 | 1.848593e-49 |
MsaG030526 | MsaG044569 | 0.809958 | 2.499894e-50 | 4.264794e-48 |
MsaG030526 | MsaG044881 | 0.814295 | 2.860900e-51 | 5.433279e-49 |
MsaG030526 | MsaG046278 | 0.819657 | 1.810901e-52 | 3.946607e-50 |
MsaG030526 | MsaG002644 | 0.803765 | 5.024388e-49 | 7.402217e-47 |
MsaG030526 | MsaG002355 | 0.802334 | 9.896421e-49 | 1.410786e-46 |
MsaG030526 | MsaG013930 | 0.802816 | 7.883010e-49 | 1.136173e-46 |
MsaG030526 | MsaG013466 | 0.804512 | 3.518161e-49 | 5.273688e-47 |
MsaG030526 | MsaG025090 | 0.807922 | 6.785937e-50 | 1.102298e-47 |
MsaG030526 | MsaG031505 | 0.814811 | 2.202081e-51 | 4.236672e-49 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG030526 | MtrunA17_Chr6g0460951 | 98.678 | 227 | 3 | 0 | 1 | 227 | 1 | 227 | 4.35e-168 | 462 |
MsaG030526 | MtrunA17_Chr1g0184271 | 46.277 | 188 | 88 | 4 | 40 | 220 | 12 | 193 | 7.14e-49 | 160 |
MsaG030526 | MtrunA17_Chr7g0260971 | 67.961 | 103 | 33 | 0 | 39 | 141 | 13 | 115 | 3.88e-47 | 155 |
MsaG030526 | MtrunA17_Chr7g0261031 | 64.815 | 108 | 38 | 0 | 39 | 146 | 7 | 114 | 4.47e-47 | 155 |
MsaG030526 | MtrunA17_Chr8g0351701 | 66.667 | 102 | 34 | 0 | 40 | 141 | 23 | 124 | 3.27e-46 | 153 |
MsaG030526 | MtrunA17_Chr5g0435641 | 54.701 | 117 | 53 | 0 | 41 | 157 | 8 | 124 | 3.81e-45 | 149 |
MsaG030526 | MtrunA17_Chr1g0184281 | 64.356 | 101 | 36 | 0 | 40 | 140 | 15 | 115 | 1.07e-44 | 148 |
MsaG030526 | MtrunA17_Chr7g0245871 | 62.745 | 102 | 38 | 0 | 40 | 141 | 27 | 128 | 2.50e-44 | 148 |
MsaG030526 | MtrunA17_Chr8g0351721 | 60.504 | 119 | 46 | 1 | 40 | 157 | 18 | 136 | 2.83e-44 | 147 |
MsaG030526 | MtrunA17_Chr6g0460941 | 68.182 | 88 | 28 | 0 | 40 | 127 | 7 | 94 | 8.39e-42 | 137 |
MsaG030526 | MtrunA17_Chr7g0245861 | 67.778 | 90 | 27 | 2 | 40 | 127 | 12 | 101 | 6.73e-36 | 124 |
MsaG030526 | MtrunA17_Chr4g0058651 | 52.294 | 109 | 51 | 1 | 39 | 147 | 10 | 117 | 4.03e-35 | 123 |
MsaG030526 | MtrunA17_Chr2g0311601 | 47.706 | 109 | 56 | 1 | 38 | 146 | 11 | 118 | 6.79e-35 | 122 |
MsaG030526 | MtrunA17_Chr4g0043421 | 49.074 | 108 | 54 | 1 | 39 | 146 | 14 | 120 | 7.05e-35 | 122 |
MsaG030526 | MtrunA17_Chr3g0114061 | 43.382 | 136 | 72 | 2 | 39 | 170 | 7 | 141 | 8.51e-35 | 121 |
MsaG030526 | MtrunA17_Chr3g0129071 | 51.376 | 109 | 52 | 1 | 38 | 146 | 45 | 152 | 2.22e-34 | 122 |
MsaG030526 | MtrunA17_Chr3g0106101 | 50.000 | 104 | 51 | 1 | 39 | 142 | 6 | 108 | 5.26e-34 | 120 |
MsaG030526 | MtrunA17_Chr6g0449641 | 48.276 | 116 | 57 | 2 | 39 | 154 | 8 | 120 | 5.53e-34 | 119 |
MsaG030526 | MtrunA17_Chr3g0117121 | 51.818 | 110 | 50 | 2 | 39 | 148 | 9 | 115 | 7.43e-34 | 120 |
MsaG030526 | MtrunA17_Chr7g0227511 | 51.923 | 104 | 49 | 1 | 39 | 142 | 10 | 112 | 8.63e-34 | 119 |
MsaG030526 | MtrunA17_Chr5g0438091 | 49.107 | 112 | 56 | 1 | 39 | 150 | 38 | 148 | 1.31e-33 | 119 |
MsaG030526 | MtrunA17_Chr5g0437401 | 50.495 | 101 | 49 | 1 | 41 | 141 | 12 | 111 | 1.66e-33 | 119 |
MsaG030526 | MtrunA17_Chr5g0437571 | 49.038 | 104 | 52 | 1 | 39 | 142 | 5 | 107 | 1.68e-32 | 115 |
MsaG030526 | MtrunA17_Chr5g0402611 | 52.427 | 103 | 48 | 1 | 39 | 141 | 7 | 108 | 3.41e-32 | 119 |
MsaG030526 | MtrunA17_Chr4g0030001 | 42.963 | 135 | 68 | 4 | 37 | 164 | 21 | 153 | 2.11e-31 | 114 |
MsaG030526 | MtrunA17_Chr3g0115431 | 50.485 | 103 | 50 | 1 | 39 | 141 | 8 | 109 | 3.18e-31 | 114 |
MsaG030526 | MtrunA17_Chr6g0449651 | 45.690 | 116 | 60 | 2 | 39 | 154 | 66 | 178 | 3.77e-31 | 113 |
MsaG030526 | MtrunA17_Chr3g0113891 | 47.917 | 96 | 49 | 1 | 41 | 136 | 15 | 109 | 9.23e-31 | 112 |
MsaG030526 | MtrunA17_Chr3g0097221 | 45.299 | 117 | 60 | 2 | 39 | 155 | 6 | 118 | 8.13e-30 | 112 |
MsaG030526 | MtrunA17_Chr5g0432451 | 52.778 | 108 | 50 | 1 | 38 | 145 | 41 | 147 | 1.07e-29 | 110 |
MsaG030526 | MtrunA17_Chr1g0200201 | 44.348 | 115 | 61 | 2 | 41 | 154 | 73 | 185 | 1.39e-28 | 107 |
MsaG030526 | MtrunA17_Chr5g0444351 | 45.283 | 106 | 57 | 1 | 41 | 146 | 6 | 110 | 2.61e-28 | 104 |
MsaG030526 | MtrunA17_Chr8g0353981 | 56.098 | 82 | 35 | 1 | 39 | 120 | 6 | 86 | 5.65e-27 | 103 |
MsaG030526 | MtrunA17_Chr7g0225111 | 40.000 | 110 | 65 | 1 | 37 | 146 | 2 | 110 | 3.73e-26 | 98.2 |
MsaG030526 | MtrunA17_Chr8g0374601 | 44.762 | 105 | 57 | 1 | 37 | 141 | 23 | 126 | 5.83e-26 | 102 |
MsaG030526 | MtrunA17_Chr8g0374591 | 39.815 | 108 | 64 | 1 | 34 | 141 | 2 | 108 | 4.15e-24 | 93.2 |
MsaG030526 | MtrunA17_Chr8g0374581 | 40.367 | 109 | 63 | 2 | 35 | 142 | 3 | 110 | 1.11e-20 | 86.7 |
MsaG030526 | MtrunA17_Chr4g0059901 | 41.584 | 101 | 58 | 1 | 41 | 141 | 11 | 110 | 1.54e-20 | 87.0 |
MsaG030526 | MtrunA17_Chr2g0330201 | 36.634 | 101 | 63 | 1 | 41 | 141 | 20 | 119 | 2.37e-19 | 84.7 |
MsaG030526 | MtrunA17_Chr8g0342351 | 37.624 | 101 | 62 | 1 | 41 | 141 | 13 | 112 | 7.82e-19 | 82.4 |
MsaG030526 | MtrunA17_Chr4g0040831 | 36.190 | 105 | 63 | 2 | 41 | 142 | 16 | 119 | 1.77e-17 | 77.8 |
MsaG030526 | MtrunA17_Chr6g0460931 | 49.524 | 105 | 33 | 3 | 140 | 227 | 6 | 107 | 3.62e-17 | 74.3 |
MsaG030526 | MtrunA17_Chr6g0452671 | 34.653 | 101 | 65 | 1 | 41 | 141 | 12 | 111 | 4.13e-17 | 76.6 |
MsaG030526 | MtrunA17_Chr6g0452691 | 38.235 | 102 | 61 | 2 | 41 | 141 | 10 | 110 | 5.51e-17 | 75.9 |
MsaG030526 | MtrunA17_Chr6g0452661 | 33.028 | 109 | 68 | 3 | 37 | 141 | 3 | 110 | 6.98e-16 | 74.3 |
MsaG030526 | MtrunA17_Chr4g0055441 | 41.975 | 81 | 45 | 2 | 41 | 120 | 3 | 82 | 9.42e-15 | 69.3 |
MsaG030526 | MtrunA17_Chr5g0439111 | 30.488 | 164 | 98 | 6 | 37 | 190 | 3 | 160 | 1.50e-13 | 67.4 |
MsaG030526 | MtrunA17_Chr2g0326041 | 52.000 | 50 | 23 | 1 | 37 | 86 | 30 | 78 | 1.93e-13 | 63.9 |
MsaG030526 | MtrunA17_Chr2g0326051 | 35.294 | 102 | 56 | 2 | 86 | 181 | 5 | 102 | 7.14e-12 | 60.8 |
MsaG030526 | MtrunA17_Chr4g0046201 | 27.072 | 181 | 99 | 5 | 39 | 191 | 5 | 180 | 1.27e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG030526 | AT3G03760.1 | 67.785 | 149 | 43 | 1 | 39 | 187 | 50 | 193 | 3.29e-62 | 196 |
MsaG030526 | AT2G42430.1 | 48.889 | 180 | 84 | 2 | 39 | 218 | 14 | 185 | 3.49e-49 | 161 |
MsaG030526 | AT3G58190.1 | 61.864 | 118 | 44 | 1 | 40 | 157 | 11 | 127 | 3.78e-48 | 158 |
MsaG030526 | AT2G42440.1 | 48.571 | 140 | 60 | 1 | 39 | 178 | 6 | 133 | 6.16e-44 | 148 |
MsaG030526 | AT2G45420.1 | 65.385 | 104 | 36 | 0 | 43 | 146 | 40 | 143 | 1.20e-43 | 147 |
MsaG030526 | AT5G06080.1 | 53.226 | 124 | 56 | 1 | 39 | 162 | 6 | 127 | 1.27e-43 | 145 |
MsaG030526 | AT4G00220.1 | 62.500 | 104 | 39 | 0 | 43 | 146 | 20 | 123 | 3.43e-43 | 145 |
MsaG030526 | AT4G00210.1 | 63.725 | 102 | 37 | 0 | 40 | 141 | 11 | 112 | 1.09e-42 | 144 |
MsaG030526 | AT2G31310.1 | 56.604 | 106 | 46 | 0 | 39 | 144 | 6 | 111 | 1.14e-42 | 143 |
MsaG030526 | AT2G45410.1 | 50.000 | 148 | 58 | 4 | 43 | 189 | 19 | 151 | 3.71e-40 | 136 |
MsaG030526 | AT3G27650.1 | 52.885 | 104 | 48 | 1 | 39 | 142 | 38 | 140 | 1.08e-34 | 121 |
MsaG030526 | AT5G63090.4 | 42.675 | 157 | 80 | 4 | 39 | 190 | 10 | 161 | 4.83e-34 | 120 |
MsaG030526 | AT5G63090.3 | 42.675 | 157 | 80 | 4 | 39 | 190 | 10 | 161 | 4.83e-34 | 120 |
MsaG030526 | AT5G63090.2 | 42.675 | 157 | 80 | 4 | 39 | 190 | 10 | 161 | 4.83e-34 | 120 |
MsaG030526 | AT5G63090.1 | 42.675 | 157 | 80 | 4 | 39 | 190 | 10 | 161 | 4.83e-34 | 120 |
MsaG030526 | AT2G30340.1 | 47.863 | 117 | 58 | 2 | 38 | 154 | 50 | 163 | 2.05e-33 | 121 |
MsaG030526 | AT2G30340.2 | 47.863 | 117 | 58 | 2 | 38 | 154 | 51 | 164 | 2.05e-33 | 121 |
MsaG030526 | AT2G30130.1 | 46.774 | 124 | 63 | 2 | 36 | 159 | 4 | 124 | 3.11e-33 | 119 |
MsaG030526 | AT1G07900.1 | 45.378 | 119 | 62 | 2 | 37 | 154 | 30 | 146 | 3.45e-33 | 119 |
MsaG030526 | AT3G11090.1 | 48.039 | 102 | 52 | 1 | 41 | 142 | 12 | 112 | 2.78e-32 | 115 |
MsaG030526 | AT2G28500.1 | 47.748 | 111 | 55 | 2 | 37 | 146 | 52 | 160 | 5.86e-32 | 117 |
MsaG030526 | AT1G16530.1 | 46.789 | 109 | 56 | 2 | 38 | 145 | 12 | 119 | 8.86e-32 | 114 |
MsaG030526 | AT5G66870.1 | 41.290 | 155 | 79 | 3 | 39 | 193 | 6 | 148 | 1.73e-31 | 117 |
MsaG030526 | AT1G31320.1 | 48.148 | 108 | 55 | 1 | 39 | 146 | 12 | 118 | 1.97e-30 | 111 |
MsaG030526 | AT2G23660.2 | 46.154 | 104 | 55 | 1 | 39 | 142 | 4 | 106 | 4.63e-29 | 111 |
MsaG030526 | AT2G23660.3 | 46.154 | 104 | 55 | 1 | 39 | 142 | 4 | 106 | 4.63e-29 | 111 |
MsaG030526 | AT2G23660.1 | 46.154 | 104 | 55 | 1 | 39 | 142 | 4 | 106 | 4.63e-29 | 111 |
MsaG030526 | AT2G40470.2 | 51.282 | 117 | 56 | 1 | 38 | 154 | 18 | 133 | 6.02e-29 | 108 |
MsaG030526 | AT2G40470.1 | 51.282 | 117 | 56 | 1 | 38 | 154 | 43 | 158 | 6.10e-29 | 108 |
MsaG030526 | AT1G65620.1 | 53.398 | 103 | 47 | 1 | 39 | 141 | 8 | 109 | 7.21e-29 | 107 |
MsaG030526 | AT1G65620.4 | 53.398 | 103 | 47 | 1 | 39 | 141 | 8 | 109 | 7.21e-29 | 107 |
MsaG030526 | AT1G65620.3 | 53.398 | 103 | 47 | 1 | 39 | 141 | 8 | 109 | 7.21e-29 | 107 |
MsaG030526 | AT1G65620.5 | 53.398 | 103 | 47 | 1 | 39 | 141 | 8 | 109 | 7.21e-29 | 107 |
MsaG030526 | AT1G65620.2 | 53.398 | 103 | 47 | 1 | 39 | 141 | 8 | 109 | 7.21e-29 | 107 |
MsaG030526 | AT3G26660.1 | 44.444 | 108 | 52 | 2 | 41 | 141 | 6 | 112 | 2.16e-28 | 104 |
MsaG030526 | AT3G26620.1 | 44.444 | 108 | 52 | 2 | 41 | 141 | 6 | 112 | 2.94e-28 | 103 |
MsaG030526 | AT3G50510.1 | 38.532 | 109 | 66 | 1 | 33 | 141 | 5 | 112 | 5.78e-24 | 95.1 |
MsaG030526 | AT3G50510.2 | 38.532 | 109 | 66 | 1 | 33 | 141 | 5 | 112 | 5.78e-24 | 95.1 |
MsaG030526 | AT1G72980.1 | 41.818 | 110 | 62 | 2 | 39 | 147 | 12 | 120 | 6.75e-21 | 87.4 |
MsaG030526 | AT3G13850.1 | 30.409 | 171 | 102 | 4 | 41 | 210 | 37 | 191 | 2.28e-19 | 84.3 |
MsaG030526 | AT5G35900.1 | 33.981 | 103 | 67 | 1 | 39 | 141 | 4 | 105 | 1.01e-16 | 76.3 |
MsaG030526 | AT3G47870.1 | 32.673 | 101 | 67 | 1 | 41 | 141 | 37 | 136 | 7.51e-15 | 72.8 |
MsaG030526 | AT1G06280.1 | 41.333 | 75 | 43 | 1 | 41 | 115 | 25 | 98 | 3.05e-14 | 69.3 |
MsaG030526 | AT4G22700.1 | 31.579 | 95 | 62 | 2 | 41 | 134 | 6 | 98 | 2.28e-12 | 63.9 |
Find 62 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTTGAAACGGCGGCTGATA+TGG | 0.243600 | 6:-9454965 | None:intergenic |
AACAACTTCAACCCTGGTTT+TGG | 0.268597 | 6:+9455073 | MsaT030526.1:CDS |
AGGCTAGCTGATCCAGTTTA+TGG | 0.286193 | 6:+9454543 | MsaT030526.1:CDS |
CCTTCTTGCTTTGCAGCAAC+AGG | 0.312094 | 6:+9454578 | MsaT030526.1:CDS |
AAATTGTTGCAGCAGCTTCC+TGG | 0.332792 | 6:-9454503 | None:intergenic |
GACTGTGATGGCTGAGTCAC+AGG | 0.379048 | 6:+9454215 | None:intergenic |
GGTGGTGATGGTAGTAGTTC+GGG | 0.392136 | 6:+9454237 | MsaT030526.1:CDS |
GTGGACACACAGCCATAAAC+TGG | 0.395590 | 6:-9454555 | None:intergenic |
GAAGCACTTGTCCAACATTC+CGG | 0.397219 | 6:+9454470 | MsaT030526.1:CDS |
TGCATCTTTGCACCCTACTT+TGG | 0.399115 | 6:+9454384 | MsaT030526.1:CDS |
TGAAGTTGTTCATGTTCATA+AGG | 0.399289 | 6:-9455060 | None:intergenic |
TAGCCTAGCTTGAGCCTCAT+AGG | 0.409914 | 6:-9454526 | None:intergenic |
ATGGTAGTAGTTCGGGAAAC+AGG | 0.414773 | 6:+9454244 | MsaT030526.1:CDS |
TGCACAGGTACATTGAAGTT+TGG | 0.417807 | 6:-9454998 | None:intergenic |
GTTGAAACGGCGGCTGATAT+GGG | 0.423151 | 6:-9454964 | None:intergenic |
TGCAAACTCAATTGATGAAT+AGG | 0.424003 | 6:+9454906 | MsaT030526.1:CDS |
GCGGCTGTGCACAAGGTGTT+TGG | 0.424834 | 6:+9454432 | MsaT030526.1:CDS |
GGGTGGTGATGGTAGTAGTT+CGG | 0.433902 | 6:+9454236 | MsaT030526.1:CDS |
GCACCACACGGCGTTATAAC+CGG | 0.444947 | 6:-9454327 | None:intergenic |
ATATCAGCCGCCGTTTCAAC+TGG | 0.453062 | 6:+9454967 | MsaT030526.1:CDS |
TTGGAATATGCTGGCTGCAC+AGG | 0.466534 | 6:-9455013 | None:intergenic |
TTGCAGCAGCTTCCTGGCGA+TGG | 0.481070 | 6:-9454497 | None:intergenic |
GGCTCTAAGCTCTGTGATGA+AGG | 0.484149 | 6:-9455115 | None:intergenic |
TTTCTCAAAACGAGACATCC+TGG | 0.484547 | 6:-9455149 | None:intergenic |
GTTGTTCATGTTCATAAGGT+TGG | 0.485083 | 6:-9455056 | None:intergenic |
GCTTCCTGGCGATGGCTAGC+CGG | 0.485119 | 6:-9454489 | None:intergenic |
TTGAGGAGGAAGTGTAGTAG+TGG | 0.488789 | 6:+9454360 | MsaT030526.1:CDS |
CCAAGGTGCGGCTAAGTTTG+CGG | 0.493536 | 6:+9454413 | MsaT030526.1:CDS |
AAGAGCAACACAAGACGAAC+CGG | 0.499358 | 6:+9454308 | MsaT030526.1:CDS |
GGTTGCTGTACCAGTTGAAA+CGG | 0.507203 | 6:-9454977 | None:intergenic |
GGTGGAAGCAGATGAGTTGT+TGG | 0.513070 | 6:-9455032 | None:intergenic |
TCCATTGTGAGGCCAAAACC+AGG | 0.515508 | 6:-9455085 | None:intergenic |
CCTGTTGCTGCAAAGCAAGA+AGG | 0.518305 | 6:-9454578 | None:intergenic |
GCGATGGCTAGCCGGAATGT+TGG | 0.521327 | 6:-9454481 | None:intergenic |
AACATGAACAACTTCAACCC+TGG | 0.523993 | 6:+9455067 | MsaT030526.1:CDS |
TGCTGCAACAATTTCCTATG+AGG | 0.529239 | 6:+9454512 | MsaT030526.1:CDS |
GTTCATGTTCATAAGGTTGG+TGG | 0.542354 | 6:-9455053 | None:intergenic |
CTGTTGCTGCAAAGCAAGAA+GGG | 0.544374 | 6:-9454577 | None:intergenic |
ACCTTGGTCAGTACCAAAGT+AGG | 0.553693 | 6:-9454397 | None:intergenic |
GCTGAGTCACAGGGTGGTGA+TGG | 0.557362 | 6:+9454225 | MsaT030526.1:CDS |
CATTCCGGCTAGCCATCGCC+AGG | 0.568999 | 6:+9454485 | MsaT030526.1:CDS |
AAACTCAATTGATGAATAGG+AGG | 0.570071 | 6:+9454909 | MsaT030526.1:CDS |
TAAGTTTGCGGCTGTGCACA+AGG | 0.570935 | 6:+9454425 | MsaT030526.1:CDS |
CCGCAAACTTAGCCGCACCT+TGG | 0.577994 | 6:-9454413 | None:intergenic |
CATGTTCATAAGGTTGGTGG+TGG | 0.580499 | 6:-9455050 | None:intergenic |
TTTCCTATGAGGCTCAAGCT+AGG | 0.591556 | 6:+9454523 | MsaT030526.1:CDS |
CCTTGGTCAGTACCAAAGTA+GGG | 0.599955 | 6:-9454396 | None:intergenic |
GATGAGTTGTTGGAATATGC+TGG | 0.605347 | 6:-9455022 | None:intergenic |
TTGAAACGGCGGCTGATATG+GGG | 0.606891 | 6:-9454963 | None:intergenic |
CCCTACTTTGGTACTGACCA+AGG | 0.613176 | 6:+9454396 | MsaT030526.1:CDS |
GGTGGCAGCTATGCAAGCAG+AGG | 0.634590 | 6:+9454874 | MsaT030526.1:intron |
GTGGTGCTTGCAAGTTCTTG+AGG | 0.646814 | 6:+9454343 | MsaT030526.1:CDS |
CTTTGGTACTGACCAAGGTG+CGG | 0.655594 | 6:+9454401 | MsaT030526.1:CDS |
TTGCTGCAAAGCAAGAAGGG+TGG | 0.671870 | 6:-9454574 | None:intergenic |
AAGGTGCCGTCTCCATTGTG+AGG | 0.672207 | 6:-9455096 | None:intergenic |
ACTGTGATGGCTGAGTCACA+GGG | 0.673977 | 6:+9454216 | None:intergenic |
GTGCTTGCAAGTTCTTGAGG+AGG | 0.680170 | 6:+9454346 | MsaT030526.1:CDS |
TGCTGTACCAGTTGAAACGG+CGG | 0.689555 | 6:-9454974 | None:intergenic |
AAGAACTTGCAAGCACCACA+CGG | 0.689772 | 6:-9454339 | None:intergenic |
CCATTGTGAGGCCAAAACCA+GGG | 0.697828 | 6:-9455084 | None:intergenic |
GAACCGGTTATAACGCCGTG+TGG | 0.738703 | 6:+9454324 | MsaT030526.1:CDS |
GTGATGGCTGAGTCACAGGG+TGG | 0.776633 | 6:+9454219 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 9454222 | 9455180 | 9454222 | ID=MsaG030526 |
Chr6 | mRNA | 9454222 | 9455180 | 9454222 | ID=MsaT030526.1;Parent=MsaG030526 |
Chr6 | exon | 9454222 | 9454599 | 9454222 | ID=MsaT030526.1.exon1;Parent=MsaT030526.1 |
Chr6 | CDS | 9454222 | 9454599 | 9454222 | ID=cds.MsaT030526.1;Parent=MsaT030526.1 |
Chr6 | exon | 9454875 | 9455180 | 9454875 | ID=MsaT030526.1.exon2;Parent=MsaT030526.1 |
Chr6 | CDS | 9454875 | 9455180 | 9454875 | ID=cds.MsaT030526.1;Parent=MsaT030526.1 |
Gene Sequence |
Protein sequence |