AlfalfaGEDB | MsaG030556

M. sativa ssp. caerulea / MsaG030556

KEGG: -
GO: -
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030556	sp\|Q8LFV3\|CDF3_ARATH	56.667	120	46	3	53	172	71	184	2.97e-38	145

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030556	tr\|A0A072U836\|A0A072U836_MEDTR	92.167	383	15	3	1	383	1	368	0.0	683

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TFs/TRs:

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Gene ID	Type	Classification
MsaG030556	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030556	MtrunA17_Chr6g0460731	92.167	383	15	3	1	383	1	368	0.0	683
MsaG030556	MtrunA17_Chr6g0460721	73.569	367	59	6	1	367	1	329	0.0	520
MsaG030556	MtrunA17_Chr7g0254161	50.263	380	136	10	15	383	12	349	1.73e-112	335
MsaG030556	MtrunA17_Chr7g0217581	46.907	194	74	7	56	246	191	358	3.37e-42	155
MsaG030556	MtrunA17_Chr6g0453321	32.951	349	165	10	55	383	96	395	3.48e-42	154
MsaG030556	MtrunA17_Chr4g0042481	34.161	322	147	12	9	289	4	301	2.54e-41	151
MsaG030556	MtrunA17_Chr3g0092111	37.736	265	110	10	50	281	98	340	6.38e-41	150
MsaG030556	MtrunA17_Chr8g0355261	33.459	266	114	8	41	289	67	286	6.63e-37	139
MsaG030556	MtrunA17_Chr5g0417571	53.509	114	44	2	55	162	99	209	2.65e-34	129
MsaG030556	MtrunA17_Chr5g0417601	52.294	109	49	1	54	162	100	205	1.62e-30	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030556	AT3G47500.1	56.667	120	46	3	53	172	71	184	3.02e-39	145
MsaG030556	AT5G39660.3	44.828	174	61	6	63	221	92	245	9.56e-36	136
MsaG030556	AT5G39660.1	44.828	174	61	6	63	221	92	245	9.56e-36	136
MsaG030556	AT5G39660.2	44.828	174	61	6	63	221	92	245	9.56e-36	136
MsaG030556	AT5G62430.1	52.137	117	49	2	64	178	26	137	6.78e-35	130
MsaG030556	AT2G34140.1	58.065	93	26	1	71	150	19	111	1.00e-33	124
MsaG030556	AT1G26790.1	48.951	143	60	4	55	184	67	209	1.15e-33	129
MsaG030556	AT1G69570.1	45.385	130	43	2	85	213	120	222	3.45e-31	122
MsaG030556	AT1G29160.1	78.333	60	13	0	91	150	56	115	3.87e-31	117
MsaG030556	AT3G55370.1	57.143	70	30	0	93	162	72	141	1.94e-24	102

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Find 82 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGAACACAAGCACTG+TGG	0.727270	6:+9978382	MsaT030556.1:CDS
AAGAGAAATGTTGATGCAAG+TGG	0.555436	6:+9978848	MsaT030556.1:CDS
AAGATTAAGCATTGAACCTT+TGG	0.298547	6:-9978816	None:intergenic
AAGCACTGTGGAAGATAATA+TGG	0.348391	6:+9978394	MsaT030556.1:CDS
AAGTAGGATCAATGCCATAA+GGG	0.561604	6:-9979081	None:intergenic
AATAGTTGTATCTCAGGTAA+TGG	0.494093	6:+9979280	MsaT030556.1:CDS
AATCTCATGTGTGTTTGCCA+AGG	0.586652	6:-9979312	None:intergenic
AATGCAACCATTTGAACCTA+TGG	0.446070	6:-9979233	None:intergenic
AATGGTATTGTCCTAAAATT+TGG	0.197738	6:+9978767	MsaT030556.1:CDS
AATGTGTCCATAGGTTCAAA+TGG	0.549266	6:+9979226	MsaT030556.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	9977236	9979330	9977236	ID=MsaG030556
Chr6	mRNA	9977236	9979330	9977236	ID=MsaT030556.1;Parent=MsaG030556
Chr6	exon	9977236	9977343	9977236	ID=MsaT030556.1.exon1;Parent=MsaT030556.1
Chr6	CDS	9977236	9977343	9977236	ID=cds.MsaT030556.1;Parent=MsaT030556.1
Chr6	exon	9978287	9979330	9978287	ID=MsaT030556.1.exon2;Parent=MsaT030556.1
Chr6	CDS	9978287	9979330	9978287	ID=cds.MsaT030556.1;Parent=MsaT030556.1

Gene Sequence

>MsaT030556.1

ATGAATGGTGAAGGTGACATGTTTGTTAAAGATTCTTCTAGTTTCATGCTCTTTGGTAAGAAGATTCCGGTGAGTTCTTCTCAGATTCAGGCCAATTCTACAACCATGATTTCTTGCAGTAACTCAAAGCATAAAGGAAATGATATGCCTCATACTCAAAACATTGAGAAATCAAAGAATTCTTCTAATGAAGAAAATGAATCAAAAGTGAACACAAGCACTGTGGAAGATAATATGGAAACTAGCAGCACAGATCAAGACAAAGTCCTAAAGAAACCAGACAAGATTGTTCAATGTCCGAGATGCAAAAGTTTCGACACAAAATTTTGTTATTTCAACAACTACAACGTCAATCAACCTCGGCATTTCTGTCGGAGTTGTCACAGATATTGGACCAACGGTGGAACAATGAGAAATGTTGCTGTCGGTGCAGGGAGACGGAAGAACAAACACATAGCTTCTCAATATCGCCACATGATTGTAGTGTCCGATGGAATTCCGACCGCCAGTTTAGAAACCAACGACTCTTCTAGGTACCAACATGGCTCAAATGTTGAATCTGCTGCGGTTTTTAGGTGTTCAAATGATAATGGTATTGTCCTAAAATTTGGTCGGGAAAATGCCTCTCTCGATGAATCCAAAGGTTCAATGCTTAATCTTATGAACCACAAGAGAAATGTTGATGCAAGTGGTAACAATTGTAGAGAAAATGGAGAGGAAGAATCATCGTTATGTGTATCGTCTGTGACAAACGGTCATACTCGAGGAAACGAGTTATTCGAATCCGAACAGAATAGGTCTAAACCTATGCAGAGCTACCCTGCACCTTCATGGATAATTCCAATGAATCAAAGTTGGAACAATGTTACTTCTATGGTTCAATCATCAATGCAGATGTGTAACCCTTATGGCATTGATCCTACTTCAATGCAGTGGTGTCACGCGCCGAGGGTTGCGGTTACAAACATTTTCACACCAAACATTGGCTTGCAATTTGTTCCTGCATCAAACAGGAATGGAACACCTTTGTATGGTAGTGGAAATGGAAATGTGTCCATAGGTTCAAATGGTTGCATTTCACCTTCTTCATCTACTACTAGTAATAGTTGTATCTCAGGTAATGGCACACCAATCCTTGGCAAACACACATGA

Protein sequence

>MsaT030556.1

MNGEGDMFVKDSSSFMLFGKKIPVSSSQIQANSTTMISCSNSKHKGNDMPHTQNIEKSKNSSNEENESKVNTSTVEDNMETSSTDQDKVLKKPDKIVQCPRCKSFDTKFCYFNNYNVNQPRHFCRSCHRYWTNGGTMRNVAVGAGRRKNKHIASQYRHMIVVSDGIPTASLETNDSSRYQHGSNVESAAVFRCSNDNGIVLKFGRENASLDESKGSMLNLMNHKRNVDASGNNCRENGEEESSLCVSSVTNGHTRGNELFESEQNRSKPMQSYPAPSWIIPMNQSWNNVTSMVQSSMQMCNPYGIDPTSMQWCHAPRVAVTNIFTPNIGLQFVPASNRNGTPLYGSGNGNVSIGSNGCISPSSSTTSNSCISGNGTPILGKHT*