AlfalfaGEDB | MsaG030563

M. sativa ssp. caerulea / MsaG030563

KEGG: K09422
GO: GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
PFAM: PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030563	sp\|Q9SEZ4\|MY105_ARATH	52.632	133	63	0	75	207	90	222	1.29e-44	155

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030563	tr\|A0A072U6Z3\|A0A072U6Z3_MEDTR	81.481	243	23	2	1	239	1	225	4.00e-131	381

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TFs/TRs:

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Gene ID	Type	Classification
MsaG030563	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000107	MsaG030563	0.811564	1.127548e-50	2.000579e-48
MsaG000135	MsaG030563	0.805821	1.877858e-49	2.901944e-47
MsaG000419	MsaG030563	0.827417	2.824732e-54	7.599215e-52
MsaG000435	MsaG030563	0.818059	4.161435e-52	8.699163e-50
MsaG000497	MsaG030563	0.832359	1.788095e-55	5.539988e-53
MsaG001399	MsaG030563	0.825039	1.033409e-53	2.602333e-51
MsaG001438	MsaG030563	0.812361	7.573618e-51	1.370420e-48
MsaG001724	MsaG030563	0.818936	2.638700e-52	5.643301e-50
MsaG001950	MsaG030563	0.842799	3.862760e-58	1.648008e-55
MsaG002481	MsaG030563	0.811856	9.748534e-51	1.742117e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030563	MtrunA17_Chr6g0460661	87.730	163	20	0	77	239	1	163	1.13e-102	295
MsaG030563	MtrunA17_Chr6g0460671	54.804	281	67	8	1	239	1	263	1.05e-85	258
MsaG030563	MtrunA17_Chr4g0042501	57.895	114	48	0	90	203	103	216	1.89e-43	151
MsaG030563	MtrunA17_Chr5g0417621	49.645	141	68	2	73	213	117	254	3.93e-43	151
MsaG030563	MtrunA17_Chr3g0125801	63.462	104	38	0	92	195	16	119	8.43e-42	144
MsaG030563	MtrunA17_Chr6g0480581	54.867	113	51	0	90	202	2	114	1.39e-41	142
MsaG030563	MtrunA17_Chr7g0254261	55.462	119	53	0	91	209	88	206	1.72e-39	139
MsaG030563	MtrunA17_Chr4g0008551	50.526	95	47	0	92	186	38	132	4.88e-30	114
MsaG030563	MtrunA17_Chr5g0437321	35.036	137	88	1	81	217	9	144	3.91e-27	105
MsaG030563	MtrunA17_Chr6g0454921	43.750	96	54	0	92	187	15	110	2.09e-26	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030563	AT1G69560.1	52.632	133	63	0	75	207	90	222	1.31e-45	155
MsaG030563	AT1G69560.2	52.632	133	63	0	75	207	106	238	1.52e-45	155
MsaG030563	AT1G26780.1	55.469	128	56	1	90	217	96	222	2.22e-43	148
MsaG030563	AT1G26780.2	55.469	128	56	1	90	217	96	222	8.27e-43	149
MsaG030563	AT4G33450.1	58.182	110	46	0	92	201	19	128	1.02e-42	145
MsaG030563	AT1G17950.1	57.547	106	45	0	90	195	3	108	1.87e-40	139
MsaG030563	AT5G17800.1	53.659	123	56	1	74	195	74	196	3.46e-38	135
MsaG030563	AT3G29020.1	52.632	114	54	0	90	203	63	176	1.52e-37	131
MsaG030563	AT3G29020.2	52.632	114	54	0	90	203	65	178	8.47e-37	131
MsaG030563	AT1G73410.2	58.095	105	44	0	91	195	5	109	2.73e-36	127

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Find 58 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCCAAAATACCCTTT+GGG	0.428010	6:-10115543	MsaT030563.1:CDS
AAAAGTTCAAAATACCCTTT+GGG	0.385798	6:-10115597	MsaT030563.1:CDS
AAACAACTTATCGCTGACCA+TGG	0.667532	6:-10115403	MsaT030563.1:CDS
AACTAGGTAAAGGCCTAGTG+CGG	0.675780	6:+10114739	None:intergenic
AACTTGAACAATGATGGTTA+TGG	0.427382	6:-10115700	MsaT030563.1:CDS
AATCCAATCTCAACCGCACT+AGG	0.519569	6:-10114752	MsaT030563.1:CDS
ACCATGACTCGAAATCCCAA+AGG	0.646290	6:+10115582	None:intergenic
ACTATCATCTATTGCAAGAA+AGG	0.451301	6:-10114829	MsaT030563.1:CDS
ACTCGCCTTCAGGGTCATGT+TGG	0.594916	6:-10115634	MsaT030563.1:CDS
AGAGGGTTTGAAATCCCAAA+GGG	0.597237	6:+10115529	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	10114719	10115734	10114719	ID=MsaG030563
Chr6	mRNA	10114719	10115734	10114719	ID=MsaT030563.1;Parent=MsaG030563
Chr6	exon	10114719	10115059	10114719	ID=MsaT030563.1.exon2;Parent=MsaT030563.1
Chr6	CDS	10114719	10115059	10114719	ID=cds.MsaT030563.1;Parent=MsaT030563.1
Chr6	exon	10115356	10115734	10115356	ID=MsaT030563.1.exon1;Parent=MsaT030563.1
Chr6	CDS	10115356	10115734	10115356	ID=cds.MsaT030563.1;Parent=MsaT030563.1

Gene Sequence

>MsaT030563.1

ATGAGTTCATTAAACTTGAACAATGATGGTTATGGTTTGTCTTTGGACTTGAAAATTTCTCTTCCATCATCATCTTCTACTCGCCTTCAGGGTCATGTTGGTAACAATGGTTTTGAAAAGTTCAAAATACCCTTTGGGATTTCGAGTCATGGTGGAATCAATGAGTCTGAAAAGTCCAAAATACCCTTTGGGATTTCAAACCCTCTGGTGATCCAACCTAATGAGAGCATGGTCCAAAAAAATGGGGGGAGTTTTAGGAACACTAACCTTTCCAAAGCTCATTGGAAACCATCTGAAGATGATAAACTTAAACAACTTATCGCTGACCATGGTGCTAAAGATTGGAACAACATTGCTGAAAAACTACAAGGAAGATCAGGGAAAATTTGTATATTAAGGTGGCTTAATCAACTAGATCCTAGCATCAAAAGAGAATCTTTAAGTAAGGAAGAAGAGGAGATGCTTTTGCAGCTTCATACACTTCATGGTAACAAATGGGCACACATTTGCAAACATTTTCCTGGAAGGACAGACAATGCACTAAAGAATAATTTCCATGTGATCAAGGCTAGCAGGCAAAGGGAACTACTATCATCTATTGCAAGAAAGGAAAAGCTAACATATGAAATCCCAGCAAAATTTTCCATCACAAGCCCCATTGATGAATCCAATCTCAACCGCACTAGGCCTTTACCTAGTTCTCAAATGGGTATACTTTGA

Protein sequence

>MsaT030563.1

MSSLNLNNDGYGLSLDLKISLPSSSSTRLQGHVGNNGFEKFKIPFGISSHGGINESEKSKIPFGISNPLVIQPNESMVQKNGGSFRNTNLSKAHWKPSEDDKLKQLIADHGAKDWNNIAEKLQGRSGKICILRWLNQLDPSIKRESLSKEEEEMLLQLHTLHGNKWAHICKHFPGRTDNALKNNFHVIKASRQRELLSSIARKEKLTYEIPAKFSITSPIDESNLNRTRPLPSSQMGIL*