AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG030565

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG030565 MtrunA17_Chr6g0460661 89.172 157 16 1 1 156 1 157 4.95e-101 290
MsaG030565 MtrunA17_Chr6g0460671 57.193 285 76 9 1 240 64 347 5.05e-85 256
MsaG030565 MtrunA17_Chr7g0254261 45.660 265 103 7 15 238 88 352 3.92e-51 170
MsaG030565 MtrunA17_Chr6g0480581 56.410 117 51 0 15 131 3 119 3.09e-45 151
MsaG030565 MtrunA17_Chr5g0417621 61.111 108 42 0 8 115 126 233 2.37e-44 154
MsaG030565 MtrunA17_Chr4g0042501 64.356 101 36 0 15 115 104 204 3.62e-44 153
MsaG030565 MtrunA17_Chr3g0125801 58.120 117 47 1 16 132 16 130 2.61e-43 148
MsaG030565 MtrunA17_Chr4g0008551 52.885 104 48 1 16 118 38 141 6.06e-36 130
MsaG030565 MtrunA17_Chr5g0437321 43.925 107 60 0 4 110 7 113 3.73e-31 116
MsaG030565 MtrunA17_Chr3g0133601 45.631 103 56 0 16 118 37 139 4.24e-30 112
MsaG030565 MtrunA17_Chr6g0454921 44.860 107 58 1 16 122 15 120 5.62e-29 108
MsaG030565 MtrunA17_Chr5g0401731 42.056 107 62 0 16 122 15 121 3.34e-28 109
MsaG030565 MtrunA17_Chr5g0429661 49.000 100 51 0 16 115 122 221 1.39e-27 108
MsaG030565 MtrunA17_Chr4g0053431 45.263 95 52 0 16 110 5 99 2.14e-27 105
MsaG030565 MtrunA17_Chr3g0117511 48.000 100 52 0 16 115 183 282 4.24e-27 108
MsaG030565 MtrunA17_Chr1g0203441 49.020 102 49 2 12 110 9 110 3.37e-26 102
MsaG030565 MtrunA17_Chr4g0058991 47.000 100 53 0 16 115 209 308 5.24e-26 105
MsaG030565 MtrunA17_Chr7g0238631 49.474 95 48 0 16 110 113 207 1.06e-25 104
MsaG030565 MtrunA17_Chr4g0055981 48.454 97 49 1 15 110 56 152 2.27e-25 99.8
MsaG030565 MtrunA17_Chr3g0139671 46.316 95 51 0 16 110 85 179 4.56e-25 103
MsaG030565 MtrunA17_Chr1g0157731 46.809 94 50 0 16 109 91 184 6.43e-25 102
MsaG030565 MtrunA17_Chr1g0157731 34.906 106 64 2 10 110 29 134 1.71e-15 75.5
MsaG030565 MtrunA17_Chr5g0397231 45.918 98 52 1 13 109 11 108 1.01e-24 100
MsaG030565 MtrunA17_Chr6g0470971 45.098 102 55 1 10 110 10 111 1.68e-24 98.6
MsaG030565 MtrunA17_Chr4g0032401 42.373 118 66 2 6 121 9 126 4.13e-24 98.2
MsaG030565 MtrunA17_Chr8g0387421 43.878 98 54 1 13 109 11 108 4.45e-24 98.2
MsaG030565 MtrunA17_Chr1g0209661 46.392 97 51 1 16 111 29 125 5.15e-24 97.8
MsaG030565 MtrunA17_Chr5g0417821 46.078 102 53 2 16 115 9 110 7.82e-24 96.7
MsaG030565 MtrunA17_Chr7g0228231 46.316 95 50 1 16 109 16 110 9.53e-24 94.7
MsaG030565 MtrunA17_Chr2g0309911 45.455 99 51 2 13 109 10 107 9.99e-24 97.1
MsaG030565 MtrunA17_Chr2g0323351 46.939 98 49 2 16 111 14 110 1.22e-23 95.5
MsaG030565 MtrunA17_Chr5g0397841 44.211 95 53 0 16 110 110 204 1.56e-23 98.2
MsaG030565 MtrunA17_Chr3g0115821 50.000 96 45 2 16 109 14 108 1.96e-23 96.7
MsaG030565 MtrunA17_Chr2g0328771 44.762 105 54 3 16 117 22 125 2.47e-23 95.9
MsaG030565 MtrunA17_Chr1g0180391 37.405 131 67 5 6 133 16 134 2.90e-23 94.0
MsaG030565 MtrunA17_Chr4g0022911 44.898 98 51 2 16 111 15 111 4.20e-23 94.7
MsaG030565 MtrunA17_Chr4g0022901 44.898 98 51 2 16 111 15 111 4.25e-23 94.4
MsaG030565 MtrunA17_Chr5g0410961 45.361 97 52 1 16 111 14 110 4.78e-23 95.5
MsaG030565 MtrunA17_Chr7g0228531 43.689 103 57 1 16 118 220 321 5.19e-23 96.7
MsaG030565 MtrunA17_Chr4g0022881 40.833 120 63 3 16 133 14 127 7.19e-23 93.2
MsaG030565 MtrunA17_Chr2g0330041 47.312 93 46 2 19 109 17 108 7.75e-23 95.9
MsaG030565 MtrunA17_Chr2g0281071 45.370 108 57 2 10 115 9 116 8.42e-23 95.1
MsaG030565 MtrunA17_Chr6g0450101 46.316 95 50 1 16 109 16 110 9.80e-23 92.0
MsaG030565 MtrunA17_Chr6g0452271 41.584 101 58 1 12 111 10 110 1.43e-22 94.4
MsaG030565 MtrunA17_Chr7g0274581 47.423 97 50 1 16 111 14 110 1.49e-22 91.7
MsaG030565 MtrunA17_Chr2g0323411 47.423 97 50 1 16 111 14 110 1.62e-22 94.0
MsaG030565 MtrunA17_Chr3g0103281 42.593 108 60 2 16 121 14 121 1.67e-22 94.0
MsaG030565 MtrunA17_Chr2g0311221 44.330 97 53 1 16 111 16 112 1.72e-22 94.0
MsaG030565 MtrunA17_Chr1g0193371 42.202 109 59 3 16 121 14 121 1.93e-22 94.4
MsaG030565 MtrunA17_Chr3g0080861 39.655 116 68 2 16 129 39 154 2.36e-22 95.1
MsaG030565 MtrunA17_Chr1g0211161 45.000 100 52 2 13 110 12 110 2.49e-22 91.7
MsaG030565 MtrunA17_Chr7g0270891 42.991 107 57 2 16 118 14 120 2.61e-22 94.0
MsaG030565 MtrunA17_Chr4g0022931 43.878 98 52 2 16 111 15 111 2.79e-22 92.4
MsaG030565 MtrunA17_Chr5g0435101 45.361 97 52 1 15 110 12 108 3.01e-22 90.9
MsaG030565 MtrunA17_Chr1g0194301 43.750 96 51 2 16 109 35 129 3.11e-22 92.4
MsaG030565 MtrunA17_Chr8g0342541 40.945 127 61 4 19 143 17 131 3.38e-22 93.2
MsaG030565 MtrunA17_Chr7g0271241 46.809 94 47 2 16 107 14 106 4.33e-22 93.6
MsaG030565 MtrunA17_Chr4g0022891 45.361 97 50 2 16 110 14 109 4.48e-22 91.3
MsaG030565 MtrunA17_Chr5g0441131 40.385 104 60 2 16 117 11 114 4.75e-22 89.7
MsaG030565 MtrunA17_Chr1g0203411 44.211 95 52 1 16 109 14 108 4.89e-22 92.0
MsaG030565 MtrunA17_Chr1g0192411 40.179 112 64 2 1 111 1 110 5.50e-22 93.6
MsaG030565 MtrunA17_Chr3g0088461 41.071 112 64 2 8 117 16 127 6.47e-22 92.4
MsaG030565 MtrunA17_Chr1g0193801 42.056 107 58 2 16 118 14 120 7.20e-22 92.8
MsaG030565 MtrunA17_Chr8g0343831 44.792 96 52 1 15 109 9 104 7.71e-22 90.9
MsaG030565 MtrunA17_Chr4g0058631 43.878 98 54 1 13 109 11 108 8.27e-22 92.4
MsaG030565 MtrunA17_Chr4g0048511 45.545 101 54 1 10 109 9 109 8.60e-22 92.4
MsaG030565 MtrunA17_Chr5g0395281 46.939 98 49 2 16 111 14 110 8.63e-22 91.7
MsaG030565 MtrunA17_Chr3g0117091 45.455 99 51 2 13 109 11 108 1.11e-21 92.0
MsaG030565 MtrunA17_Chr4g0070641 42.857 98 55 1 15 111 13 110 1.19e-21 88.2
MsaG030565 MtrunA17_Chr8g0346561 41.584 101 56 2 16 113 14 114 1.49e-21 90.9
MsaG030565 MtrunA17_Chr3g0099131 39.655 116 68 2 16 129 43 158 1.51e-21 92.8
MsaG030565 MtrunA17_Chr8g0354661 40.909 110 63 2 16 123 39 148 2.09e-21 92.4
MsaG030565 MtrunA17_Chr5g0400821 43.878 98 53 2 16 111 14 111 2.65e-21 90.5
MsaG030565 MtrunA17_Chr7g0228891 45.263 95 49 2 19 111 17 110 2.76e-21 89.7
MsaG030565 MtrunA17_Chr1g0194291 42.857 105 57 2 12 113 19 123 3.02e-21 89.4
MsaG030565 MtrunA17_Chr1g0168661 43.750 96 51 2 16 109 23 117 3.20e-21 89.4
MsaG030565 MtrunA17_Chr4g0070611 43.299 97 54 1 16 111 14 110 3.72e-21 90.1
MsaG030565 MtrunA17_Chr8g0342521 45.161 93 48 2 19 109 17 108 4.27e-21 90.5
MsaG030565 MtrunA17_Chr4g0030881 38.393 112 59 3 16 117 9 120 4.42e-21 89.0
MsaG030565 MtrunA17_Chr8g0349261 38.037 163 88 8 16 172 15 170 4.53e-21 89.4
MsaG030565 MtrunA17_Chr1g0187761 46.316 95 48 2 19 111 17 110 4.98e-21 88.6
MsaG030565 MtrunA17_Chr1g0186061 40.816 98 55 2 16 111 22 118 5.49e-21 88.6
MsaG030565 MtrunA17_Chr6g0453471 46.316 95 50 1 16 109 14 108 6.38e-21 90.1
MsaG030565 MtrunA17_Chr4g0068061 36.496 137 74 3 16 151 14 138 6.40e-21 89.7
MsaG030565 MtrunA17_Chr7g0228991 44.330 97 53 1 16 111 31 127 6.87e-21 88.6
MsaG030565 MtrunA17_Chr2g0327821 42.708 96 52 2 16 109 8 102 8.69e-21 87.4
MsaG030565 MtrunA17_Chr1g0151941 41.584 101 57 2 13 111 11 111 8.96e-21 87.8
MsaG030565 MtrunA17_Chr7g0228401 43.617 94 53 0 27 120 290 383 9.61e-21 90.5
MsaG030565 MtrunA17_Chr3g0135311 42.857 98 54 2 16 111 14 111 1.03e-20 89.4
MsaG030565 MtrunA17_Chr7g0217221 42.268 97 55 1 16 111 14 110 1.17e-20 87.8
MsaG030565 MtrunA17_Chr3g0110351 44.954 109 56 3 16 121 14 121 1.25e-20 88.6
MsaG030565 MtrunA17_Chr4g0037141 42.268 97 55 1 16 111 14 110 1.40e-20 87.8
MsaG030565 MtrunA17_Chr4g0039971 45.918 98 50 2 16 111 15 111 1.42e-20 89.0
MsaG030565 MtrunA17_Chr7g0275911 41.489 94 54 1 19 111 17 110 1.56e-20 87.4
MsaG030565 MtrunA17_Chr5g0440781 37.736 106 64 2 12 115 10 115 1.95e-20 85.5
MsaG030565 MtrunA17_Chr8g0342481 43.434 99 54 1 13 109 11 109 1.96e-20 89.0
MsaG030565 MtrunA17_Chr8g0385321 40.625 96 56 1 16 110 14 109 2.00e-20 88.2
MsaG030565 MtrunA17_Chr2g0327351 43.878 98 53 2 16 111 14 111 2.31e-20 87.8
MsaG030565 MtrunA17_Chr5g0434931 43.299 97 54 1 16 111 37 133 2.43e-20 87.4
MsaG030565 MtrunA17_Chr5g0434571 44.954 109 56 3 16 121 50 157 2.94e-20 88.2
MsaG030565 MtrunA17_Chr5g0434911 42.708 96 54 1 16 110 23 118 3.11e-20 87.0
MsaG030565 MtrunA17_Chr1g0167691 43.299 97 54 1 16 111 14 110 3.41e-20 86.3
MsaG030565 MtrunA17_Chr6g0453211 42.268 97 55 1 16 111 14 110 4.52e-20 87.0
MsaG030565 MtrunA17_Chr7g0217741 43.878 98 52 2 16 111 14 110 4.62e-20 87.0
MsaG030565 MtrunA17_Chr1g0167661 43.299 97 54 1 16 111 14 110 4.66e-20 85.9
MsaG030565 MtrunA17_Chr1g0152011 42.857 98 54 2 16 111 14 111 4.67e-20 87.4
MsaG030565 MtrunA17_Chr1g0194951 40.625 96 56 1 16 110 14 109 6.03e-20 87.4
MsaG030565 MtrunA17_Chr4g0054391 42.268 97 54 2 16 110 14 110 6.40e-20 86.3
MsaG030565 MtrunA17_Chr7g0228481 42.857 98 55 1 16 113 220 316 6.93e-20 87.8
MsaG030565 MtrunA17_Chr5g0434831 42.708 96 54 1 16 110 9 104 7.13e-20 84.0
MsaG030565 MtrunA17_Chr5g0440761 37.736 106 64 2 12 115 10 115 7.32e-20 85.9
MsaG030565 MtrunA17_Chr8g0360111 44.898 98 51 2 16 111 27 123 7.69e-20 85.5
MsaG030565 MtrunA17_Chr5g0441141 37.736 106 64 2 12 115 10 115 8.32e-20 85.9
MsaG030565 MtrunA17_Chr4g0044421 43.299 97 52 2 15 109 13 108 8.61e-20 84.0
MsaG030565 MtrunA17_Chr4g0028311 43.000 100 55 2 12 109 10 109 9.79e-20 86.3
MsaG030565 MtrunA17_Chr3g0092401 42.268 97 55 1 16 111 15 111 1.08e-19 85.9
MsaG030565 MtrunA17_Chr4g0068921 45.745 94 50 1 19 111 29 122 1.22e-19 83.6
MsaG030565 MtrunA17_Chr5g0434841 43.299 97 54 1 16 111 22 118 1.29e-19 85.9
MsaG030565 MtrunA17_Chr7g0254411 43.299 97 54 1 16 111 14 110 1.50e-19 85.9
MsaG030565 MtrunA17_Chr3g0131121 39.796 98 58 1 15 111 13 110 2.06e-19 85.1
MsaG030565 MtrunA17_Chr7g0264641 42.857 98 54 2 16 111 14 111 2.07e-19 84.7
MsaG030565 MtrunA17_Chr7g0247131 49.398 83 39 2 42 121 5 87 2.36e-19 84.3
MsaG030565 MtrunA17_Chr1g0154031 39.091 110 65 2 16 123 78 187 2.53e-19 85.9
MsaG030565 MtrunA17_Chr3g0121241 40.206 97 57 1 16 111 44 140 2.72e-19 84.7
MsaG030565 MtrunA17_Chr4g0072751 41.837 98 55 2 16 111 14 111 3.42e-19 85.1
MsaG030565 MtrunA17_Chr4g0060721 42.268 97 55 1 16 111 15 111 3.96e-19 84.7
MsaG030565 MtrunA17_Chr7g0261281 44.330 97 53 1 16 111 14 110 4.38e-19 84.0
MsaG030565 MtrunA17_Chr4g0057031 42.857 98 53 2 16 111 14 110 6.04e-19 83.2
MsaG030565 MtrunA17_Chr7g0220341 38.983 118 66 3 2 113 12 129 9.75e-19 82.8
MsaG030565 MtrunA17_Chr7g0233061 38.393 112 67 1 2 113 166 275 1.01e-18 84.0
MsaG030565 MtrunA17_Chr7g0240821 44.681 94 49 2 19 110 6 98 1.03e-18 82.0
MsaG030565 MtrunA17_Chr1g0177901 42.529 87 50 0 27 113 5 91 1.03e-18 81.6
MsaG030565 MtrunA17_Chr8g0334881 42.708 96 53 2 16 109 12 107 1.10e-18 83.2
MsaG030565 MtrunA17_Chr4g0042671 43.299 97 54 1 16 111 14 110 1.22e-18 84.0
MsaG030565 MtrunA17_Chr2g0293911 44.211 95 52 1 16 109 26 120 1.54e-18 83.2
MsaG030565 MtrunA17_Chr2g0322521 41.441 111 61 3 16 123 31 140 8.03e-18 81.6
MsaG030565 MtrunA17_Chr4g0013361 40.196 102 59 2 16 115 12 113 1.12e-17 80.1
MsaG030565 MtrunA17_Chr8g0362231 36.000 100 63 1 19 117 25 124 9.12e-17 79.0
MsaG030565 MtrunA17_Chr5g0434901 50.794 63 31 0 48 110 8 70 1.40e-16 73.6
MsaG030565 MtrunA17_Chr6g0453751 39.000 100 50 4 4 93 11 109 2.77e-16 73.2
MsaG030565 MtrunA17_Chr7g0238651 33.333 108 69 1 16 120 7 114 3.59e-16 76.6
MsaG030565 MtrunA17_Chr3g0099141 40.698 86 46 2 16 96 42 127 5.49e-16 72.4
MsaG030565 MtrunA17_Chr6g0487491 39.286 112 54 4 12 111 10 119 5.68e-16 75.1
MsaG030565 MtrunA17_Chr5g0416341 34.211 114 72 2 19 131 29 140 1.25e-15 75.5
MsaG030565 MtrunA17_Chr7g0229101 50.000 62 31 0 49 110 8 69 1.80e-15 72.8
MsaG030565 MtrunA17_Chr7g0269831 38.393 112 62 2 16 120 14 125 4.36e-15 73.6
MsaG030565 MtrunA17_Chr5g0425591 40.000 80 46 2 16 93 11 90 4.89e-15 68.6
MsaG030565 MtrunA17_Chr8g0342531 33.036 112 62 3 13 112 11 121 6.29e-15 70.1
MsaG030565 MtrunA17_Chr8g0342461 39.024 82 48 1 13 92 11 92 2.41e-14 68.2
MsaG030565 MtrunA17_Chr5g0395221 45.333 75 40 1 16 89 14 88 2.75e-14 66.2
MsaG030565 MtrunA17_Chr7g0229131 46.032 63 34 0 49 111 8 70 6.74e-14 67.8
MsaG030565 MtrunA17_Chr8g0342471 39.024 82 48 1 13 92 11 92 7.95e-14 66.6
MsaG030565 MtrunA17_Chr8g0342511 41.558 77 42 2 13 87 11 86 1.22e-13 65.1
MsaG030565 MtrunA17_Chr4g0042611 44.000 75 41 1 16 89 14 88 4.06e-13 63.2
MsaG030565 MtrunA17_Chr6g0483051 34.409 93 60 1 17 109 70 161 6.55e-13 67.8
MsaG030565 MtrunA17_Chr2g0323321 37.647 85 50 2 11 93 8 91 8.32e-13 63.2
MsaG030565 MtrunA17_Chr3g0093811 39.683 63 38 0 49 111 18 80 5.21e-12 63.9
MsaG030565 MtrunA17_Chr3g0104501 51.923 52 25 0 16 67 133 184 1.19e-11 62.0
MsaG030565 MtrunA17_Chr7g0274481 36.957 92 57 1 19 110 10 100 2.24e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG030565 AT1G69560.1 33.708 267 116 3 2 238 93 328 2.59e-45 154
MsaG030565 AT1G69560.2 33.708 267 116 3 2 238 109 344 5.65e-45 154
MsaG030565 AT4G33450.1 57.500 120 48 2 1 117 1 120 6.28e-44 148
MsaG030565 AT1G17950.1 60.396 101 40 0 15 115 4 104 7.81e-43 145
MsaG030565 AT1G26780.1 52.800 125 59 0 16 140 98 222 3.75e-42 145
MsaG030565 AT1G26780.2 52.800 125 59 0 16 140 98 222 1.36e-41 145
MsaG030565 AT1G73410.1 36.100 241 135 4 15 240 5 241 1.27e-40 140
MsaG030565 AT3G29020.1 60.396 101 40 0 15 115 64 164 9.19e-40 137
MsaG030565 AT5G17800.1 60.396 101 40 0 15 115 92 192 2.29e-39 139
MsaG030565 AT1G73410.2 61.386 101 39 0 15 115 5 105 9.05e-39 134
MsaG030565 AT3G29020.2 60.396 101 40 0 15 115 66 166 1.06e-38 136
MsaG030565 AT3G55730.1 53.684 95 44 0 16 110 56 150 7.11e-31 118
MsaG030565 AT5G39700.1 52.525 99 47 0 17 115 57 155 3.95e-30 111
MsaG030565 AT2G39880.1 48.598 107 51 1 4 110 42 144 4.67e-29 112
MsaG030565 AT5G67300.1 47.368 95 50 0 16 110 6 100 7.10e-29 110
MsaG030565 AT4G37260.1 45.545 101 55 0 10 110 7 107 4.03e-28 109
MsaG030565 AT3G09230.1 48.421 95 49 0 16 110 55 149 1.49e-27 108
MsaG030565 AT2G25230.1 45.000 100 55 0 16 115 26 125 2.61e-27 105
MsaG030565 AT5G11050.1 49.000 100 51 0 16 115 105 204 4.24e-27 108
MsaG030565 AT5G58850.1 49.000 100 51 0 16 115 105 204 7.75e-27 107
MsaG030565 AT5G40360.1 44.000 100 56 0 16 115 158 257 9.95e-27 106
MsaG030565 AT3G50060.1 44.211 95 53 0 16 110 6 100 1.17e-26 105
MsaG030565 AT2G23290.1 45.263 95 52 0 16 110 13 107 4.76e-26 103
MsaG030565 AT3G27785.1 46.000 100 54 0 16 115 189 288 1.25e-25 104
MsaG030565 AT4G18770.1 47.000 100 53 0 16 115 217 316 1.29e-25 103
MsaG030565 AT5G11510.3 46.316 95 51 0 16 110 81 175 2.78e-25 104
MsaG030565 AT5G11510.1 46.316 95 51 0 16 110 81 175 2.78e-25 104
MsaG030565 AT5G11510.4 46.316 95 51 0 16 110 81 175 2.78e-25 104
MsaG030565 AT5G11510.2 46.316 95 51 0 16 110 81 175 4.08e-25 103
MsaG030565 AT2G26950.1 42.202 109 54 2 15 118 17 121 4.20e-25 102
MsaG030565 AT3G53200.1 46.316 95 48 2 19 111 14 107 4.21e-25 99.4
MsaG030565 AT5G11510.5 46.316 95 51 0 16 110 81 175 4.99e-25 103
MsaG030565 AT1G63910.1 46.939 98 51 1 13 109 11 108 5.21e-25 101
MsaG030565 AT2G47190.1 47.368 95 49 1 16 109 22 116 1.54e-24 99.0
MsaG030565 AT3G48920.1 46.465 99 52 1 13 110 17 115 1.56e-24 98.6
MsaG030565 AT5G14750.1 38.462 130 77 2 7 133 9 138 1.80e-24 97.1
MsaG030565 AT3G09370.1 47.368 95 50 0 16 110 130 224 2.15e-24 101
MsaG030565 AT3G09370.2 47.368 95 50 0 16 110 135 229 2.42e-24 101
MsaG030565 AT5G02320.1 46.316 95 51 0 16 110 127 221 2.64e-24 101
MsaG030565 AT5G02320.2 46.316 95 51 0 16 110 127 221 2.64e-24 101
MsaG030565 AT3G09370.3 47.368 95 50 0 16 110 143 237 2.78e-24 100
MsaG030565 AT5G02320.3 46.316 95 51 0 16 110 67 161 2.84e-24 100
MsaG030565 AT3G12720.1 47.312 93 46 2 19 109 27 118 2.92e-24 98.6
MsaG030565 AT4G25560.1 46.875 96 50 1 16 110 12 107 4.05e-24 97.8
MsaG030565 AT4G05100.1 48.039 102 51 2 16 115 15 116 6.44e-24 98.2
MsaG030565 AT5G40350.1 43.363 113 56 3 16 121 19 130 7.28e-24 95.5
MsaG030565 AT5G54230.1 48.454 97 49 1 16 111 14 110 9.89e-24 97.4
MsaG030565 AT4G28110.1 48.454 97 49 1 16 111 14 110 1.07e-23 96.7
MsaG030565 AT3G11440.3 40.909 110 63 2 16 123 43 152 1.34e-23 99.4
MsaG030565 AT3G11440.4 40.909 110 63 2 16 123 43 152 1.34e-23 99.4
MsaG030565 AT3G11440.1 40.909 110 63 2 16 123 43 152 1.34e-23 99.4
MsaG030565 AT3G11440.2 40.909 110 63 2 16 123 43 152 1.37e-23 99.0
MsaG030565 AT5G07700.1 47.423 97 50 1 16 111 14 110 1.41e-23 97.4
MsaG030565 AT5G07700.2 47.423 97 50 1 16 111 14 110 1.41e-23 97.4
MsaG030565 AT1G18570.1 46.078 102 53 2 16 115 15 116 1.62e-23 97.4
MsaG030565 AT1G79180.1 46.078 102 52 2 12 111 12 112 1.68e-23 96.3
MsaG030565 AT3G23250.1 45.361 97 52 1 16 111 14 110 1.87e-23 96.3
MsaG030565 AT1G48000.1 46.739 92 48 1 19 109 37 128 2.08e-23 95.1
MsaG030565 AT3G27810.1 46.316 95 50 1 16 109 22 116 2.72e-23 94.4
MsaG030565 AT5G12870.1 42.056 107 60 2 13 117 17 123 2.83e-23 95.5
MsaG030565 AT5G61420.2 46.392 97 51 1 16 111 14 110 3.00e-23 97.1
MsaG030565 AT5G52600.1 43.299 97 54 1 16 111 14 110 4.69e-23 93.2
MsaG030565 AT5G65230.1 51.042 96 44 2 16 109 14 108 5.05e-23 95.5
MsaG030565 AT3G02940.2 48.421 95 48 1 16 109 14 108 5.77e-23 95.1
MsaG030565 AT3G01530.1 46.316 95 50 1 16 109 27 121 6.47e-23 92.8
MsaG030565 AT3G08500.1 42.453 106 60 1 6 110 22 127 6.98e-23 95.5
MsaG030565 AT5G40330.1 40.336 119 62 3 9 118 1 119 7.18e-23 93.2
MsaG030565 AT3G02940.1 48.421 95 48 1 16 109 14 108 8.36e-23 95.1
MsaG030565 AT3G02940.3 48.421 95 48 1 16 109 14 108 8.36e-23 95.1
MsaG030565 AT4G17785.2 46.939 98 49 2 16 111 15 111 9.28e-23 95.5
MsaG030565 AT4G17785.1 46.939 98 49 2 16 111 15 111 1.10e-22 95.1
MsaG030565 AT5G40430.1 41.584 101 58 1 15 115 53 152 1.18e-22 93.6
MsaG030565 AT5G06100.1 40.909 110 63 2 16 123 34 143 1.21e-22 95.9
MsaG030565 AT5G06100.5 40.909 110 63 2 16 123 34 143 1.38e-22 96.3
MsaG030565 AT5G06100.2 40.909 110 63 2 16 123 34 143 1.38e-22 96.3
MsaG030565 AT5G06100.3 40.909 110 63 2 16 123 34 143 1.38e-22 96.3
MsaG030565 AT5G06100.4 40.909 110 63 2 16 123 34 143 1.38e-22 96.3
MsaG030565 AT5G07690.1 45.361 97 52 1 16 111 14 110 1.45e-22 94.7
MsaG030565 AT3G01140.2 45.361 97 52 1 16 111 14 110 1.71e-22 94.4
MsaG030565 AT4G01680.3 33.121 157 90 3 13 166 11 155 1.78e-22 92.4
MsaG030565 AT3G01140.1 45.361 97 52 1 16 111 57 153 2.27e-22 94.7
MsaG030565 AT4G32730.5 42.105 95 55 0 16 110 87 181 2.57e-22 95.9
MsaG030565 AT4G32730.4 42.105 95 55 0 16 110 87 181 2.57e-22 95.9
MsaG030565 AT4G32730.3 42.105 95 55 0 16 110 87 181 2.57e-22 95.9
MsaG030565 AT4G32730.2 42.105 95 55 0 16 110 87 181 2.57e-22 95.9
MsaG030565 AT5G60890.1 45.833 96 51 1 16 110 14 109 2.68e-22 93.2
MsaG030565 AT4G32730.1 42.105 95 55 0 16 110 87 181 2.74e-22 95.5
MsaG030565 AT5G35550.1 41.818 110 63 1 1 109 1 110 3.34e-22 92.0
MsaG030565 AT5G15310.2 46.316 95 50 1 16 109 14 108 3.74e-22 93.2
MsaG030565 AT3G30210.1 43.158 95 53 1 16 109 29 123 3.79e-22 92.4
MsaG030565 AT3G28470.1 44.211 95 52 1 16 109 14 108 3.92e-22 93.2
MsaG030565 AT4G21440.1 47.423 97 50 1 16 111 14 110 4.14e-22 93.6
MsaG030565 AT1G57560.1 44.330 97 51 2 16 110 14 109 4.34e-22 92.8
MsaG030565 AT1G57560.2 44.330 97 51 2 16 110 14 109 4.48e-22 92.0
MsaG030565 AT5G15310.1 46.316 95 50 1 16 109 14 108 4.51e-22 93.2
MsaG030565 AT1G74430.1 46.316 95 50 1 16 109 14 108 4.60e-22 92.0
MsaG030565 AT4G01680.1 32.903 155 93 2 13 166 11 155 5.06e-22 93.2
MsaG030565 AT5G52260.1 50.515 97 45 2 16 110 14 109 5.54e-22 91.7
MsaG030565 AT1G09540.1 43.519 108 53 3 16 116 14 120 5.66e-22 93.2
MsaG030565 AT5G10280.1 45.918 98 50 2 16 111 14 110 7.48e-22 92.8
MsaG030565 AT3G13890.2 44.565 92 50 1 19 109 17 108 8.10e-22 92.8
MsaG030565 AT5G15310.4 46.316 95 50 1 16 109 14 108 8.64e-22 90.9
MsaG030565 AT3G53200.2 57.377 61 26 0 49 109 12 72 9.65e-22 89.7
MsaG030565 AT3G27920.1 40.000 100 59 1 11 109 11 110 1.05e-21 90.1
MsaG030565 AT1G16490.1 44.554 101 55 1 12 111 12 112 1.27e-21 90.9
MsaG030565 AT5G26660.1 43.243 111 57 3 13 118 11 120 1.35e-21 92.0
MsaG030565 AT1G25340.1 42.453 106 60 1 7 111 11 116 1.52e-21 90.9
MsaG030565 AT4G00540.2 43.269 104 55 2 16 115 103 206 1.66e-21 92.4
MsaG030565 AT4G00540.2 31.776 107 64 2 13 110 43 149 9.95e-11 61.2
MsaG030565 AT1G74080.1 44.211 95 52 1 16 109 14 108 1.66e-21 91.7
MsaG030565 AT1G25340.2 42.718 103 55 1 7 109 11 109 1.69e-21 90.9
MsaG030565 AT4G26930.1 31.034 174 111 4 16 180 21 194 1.99e-21 92.0
MsaG030565 AT1G25340.3 41.905 105 57 1 7 111 11 111 2.10e-21 90.9
MsaG030565 AT4G00540.1 43.269 104 55 2 16 115 101 204 2.55e-21 92.0
MsaG030565 AT3G61250.1 44.898 98 51 2 16 111 14 110 2.67e-21 90.5
MsaG030565 AT1G34670.1 47.368 95 49 1 16 109 14 108 2.84e-21 91.3
MsaG030565 AT3G12820.1 42.857 98 53 2 16 111 16 112 3.23e-21 89.4
MsaG030565 AT1G18710.1 44.211 95 52 1 16 109 14 108 3.59e-21 89.7
MsaG030565 AT1G35515.1 41.237 97 56 1 16 111 14 110 4.04e-21 88.2
MsaG030565 AT4G13480.1 41.667 108 59 3 16 120 8 114 5.77e-21 89.0
MsaG030565 AT3G13890.1 41.584 101 49 2 19 109 17 117 6.24e-21 90.5
MsaG030565 AT5G23000.1 43.269 104 53 3 12 111 10 111 6.71e-21 90.1
MsaG030565 AT4G38620.1 42.268 97 55 1 16 111 14 110 7.31e-21 89.0
MsaG030565 AT5G56110.1 43.158 95 53 1 16 109 14 108 7.59e-21 89.7
MsaG030565 AT1G68320.1 45.161 93 48 2 19 109 24 115 8.17e-21 89.0
MsaG030565 AT2G32460.1 39.640 111 63 3 16 123 20 129 8.45e-21 90.9
MsaG030565 AT2G32460.2 39.640 111 63 3 16 123 8 117 9.41e-21 90.9
MsaG030565 AT5G16770.4 46.316 95 50 1 16 109 14 108 9.97e-21 89.4
MsaG030565 AT5G16770.3 46.316 95 50 1 16 109 14 108 9.97e-21 89.4
MsaG030565 AT1G22640.1 44.792 96 50 2 16 109 14 108 1.06e-20 88.2
MsaG030565 AT1G56160.1 45.361 97 50 2 13 107 13 108 1.09e-20 89.0
MsaG030565 AT1G66230.1 46.392 97 49 2 16 110 14 109 1.18e-20 88.6
MsaG030565 AT4G01680.2 31.953 169 88 4 13 166 11 167 1.25e-20 89.4
MsaG030565 AT5G16770.1 45.361 97 52 1 16 111 14 110 1.41e-20 89.0
MsaG030565 AT5G16770.2 45.361 97 52 1 16 111 14 110 1.41e-20 89.0
MsaG030565 AT5G62470.1 41.667 96 56 0 16 111 14 109 2.26e-20 89.0
MsaG030565 AT3G49690.1 44.898 98 52 2 16 111 14 111 2.28e-20 88.2
MsaG030565 AT3G24310.1 43.750 96 51 2 16 109 20 114 2.55e-20 87.4
MsaG030565 AT3G47600.1 43.299 97 54 1 16 111 14 110 2.63e-20 88.2
MsaG030565 AT4G09460.1 40.206 97 57 1 16 111 14 110 2.71e-20 86.7
MsaG030565 AT5G65790.1 43.878 98 53 2 16 111 14 111 2.73e-20 89.0
MsaG030565 AT4G34990.1 42.268 97 55 1 16 111 14 110 3.29e-20 87.0
MsaG030565 AT2G16720.1 41.837 98 54 2 16 111 14 110 3.37e-20 87.0
MsaG030565 AT5G59780.3 40.816 98 55 2 16 111 10 106 4.16e-20 86.3
MsaG030565 AT5G57620.1 43.878 98 53 2 16 111 14 111 4.95e-20 87.4
MsaG030565 AT3G46130.1 42.708 96 52 2 16 109 11 105 5.90e-20 86.3
MsaG030565 AT1G06180.1 44.898 98 51 2 16 111 14 110 6.75e-20 85.9
MsaG030565 AT3G13540.1 40.206 97 57 1 16 111 25 121 7.26e-20 85.9
MsaG030565 AT5G49620.1 46.316 95 50 1 16 109 28 122 7.68e-20 86.7
MsaG030565 AT5G55020.1 40.206 97 57 1 16 111 28 124 7.75e-20 88.2
MsaG030565 AT4G12350.1 44.898 98 51 2 16 111 14 110 9.34e-20 86.3
MsaG030565 AT5G14340.1 43.137 102 54 3 19 117 29 129 1.39e-19 85.5
MsaG030565 AT1G74650.1 43.299 97 54 1 16 111 14 110 1.58e-19 86.3
MsaG030565 AT1G79180.2 35.821 134 52 2 12 111 12 145 1.61e-19 86.3
MsaG030565 AT1G08810.1 43.299 97 54 1 16 111 14 110 1.61e-19 85.5
MsaG030565 AT5G16600.1 44.898 98 51 2 16 111 14 110 2.40e-19 85.5
MsaG030565 AT3G62610.1 40.625 96 56 1 16 110 14 109 2.51e-19 85.9
MsaG030565 AT5G49330.1 39.583 96 57 1 16 110 14 109 3.22e-19 85.5
MsaG030565 AT2G26960.1 41.667 96 55 1 15 109 21 116 3.57e-19 85.9
MsaG030565 AT3G28910.1 42.268 97 55 1 16 111 14 110 4.24e-19 84.7
MsaG030565 AT4G22680.1 44.898 98 51 2 16 111 14 110 5.56e-19 83.6
MsaG030565 AT2G31180.1 42.553 94 53 1 19 111 17 110 6.87e-19 83.2
MsaG030565 AT5G62470.2 41.237 97 56 1 16 111 14 110 7.07e-19 84.7
MsaG030565 AT5G14750.3 42.529 87 48 1 49 133 18 104 7.85e-19 81.3
MsaG030565 AT1G66370.1 42.268 97 55 1 16 111 10 106 1.01e-18 82.8
MsaG030565 AT3G60460.1 42.708 96 53 2 16 109 13 108 1.35e-18 83.2
MsaG030565 AT5G40350.2 46.835 79 35 2 49 121 8 85 1.38e-18 80.5
MsaG030565 AT2G47460.1 39.583 96 57 1 16 110 14 109 1.83e-18 83.6
MsaG030565 AT4G37780.1 41.667 96 54 2 16 109 14 109 1.85e-18 82.8
MsaG030565 AT3G27810.2 52.459 61 29 0 49 109 7 67 3.49e-18 79.7
MsaG030565 AT3G06490.1 42.857 98 53 2 16 111 21 117 7.90e-18 81.3
MsaG030565 AT3G12820.2 54.098 61 28 0 49 109 2 62 1.84e-17 78.2
MsaG030565 AT5G59780.2 49.206 63 32 0 49 111 23 85 3.21e-17 77.8
MsaG030565 AT5G35550.2 54.839 62 28 0 49 110 53 114 3.50e-17 78.6
MsaG030565 AT2G36890.1 43.011 93 51 2 19 109 17 109 3.69e-17 79.3
MsaG030565 AT2G36890.2 42.105 95 53 2 19 111 58 152 4.95e-17 79.3
MsaG030565 AT3G46130.4 50.820 61 30 0 49 109 23 83 5.98e-17 77.8
MsaG030565 AT3G46130.3 50.820 61 30 0 49 109 13 73 7.02e-17 77.4
MsaG030565 AT2G02820.3 38.000 100 61 1 19 117 33 132 1.26e-16 78.2
MsaG030565 AT2G02820.1 38.000 100 61 1 19 117 33 132 2.38e-16 78.2
MsaG030565 AT2G02820.2 38.000 100 61 1 19 117 33 132 2.54e-16 78.2
MsaG030565 AT5G49620.2 40.367 109 50 2 16 109 28 136 2.69e-16 77.0
MsaG030565 AT5G26660.2 46.575 73 36 1 49 118 17 89 3.65e-16 76.6
MsaG030565 AT1G14350.2 37.000 100 62 1 19 117 28 127 4.19e-16 77.4
MsaG030565 AT1G14350.1 37.000 100 62 1 19 117 28 127 4.19e-16 77.4
MsaG030565 AT1G66380.1 43.299 97 54 1 16 111 10 106 7.92e-16 72.4
MsaG030565 AT1G56650.1 38.571 140 78 4 16 153 10 143 1.75e-15 73.9
MsaG030565 AT5G62320.1 37.500 104 55 3 16 110 15 117 2.44e-15 73.6
MsaG030565 AT3G18100.1 37.500 88 55 0 16 103 546 633 2.06e-14 72.8
MsaG030565 AT3G18100.3 37.500 88 55 0 16 103 498 585 2.11e-14 72.8
MsaG030565 AT3G47600.2 49.206 63 32 0 49 111 42 104 2.59e-14 71.6
MsaG030565 AT3G18100.4 37.500 88 55 0 16 103 385 472 2.98e-14 72.0
MsaG030565 AT3G18100.2 37.500 88 55 0 16 103 333 420 3.16e-14 72.0
MsaG030565 AT1G66390.1 43.299 97 54 1 16 111 10 106 3.55e-14 70.1
MsaG030565 AT2G37630.1 33.981 103 65 1 16 115 4 106 4.01e-14 71.2
MsaG030565 AT1G66380.3 53.226 62 29 0 49 110 11 72 2.24e-11 59.3
MsaG030565 AT5G14750.4 36.364 77 47 1 59 133 1 77 2.56e-11 60.1
MsaG030565 AT5G14750.2 36.364 77 47 1 59 133 1 77 2.56e-11 60.1
MsaG030565 AT1G09770.1 36.957 92 57 1 19 110 10 100 4.03e-11 62.8

Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTTCTTCCTTACTTAA+AGG 0.144161 6:+10134548 None:intergenic
TTGCAGCTTCATACACTTCA+TGG 0.319080 6:-10134518 MsaT030565.1:CDS
CACATTTGCAAACACTTTCC+TGG 0.324885 6:-10134482 MsaT030565.1:CDS
TCTCATAGCACTGCAAGTTT+TGG 0.326446 6:+10133954 None:intergenic
TGAGTTTGAATCTGAATGAT+TGG 0.332521 6:+10133882 None:intergenic
AGTGCATTGTCTGTCCTTCC+AGG 0.355828 6:+10134464 None:intergenic
CAGGGAAAAGCTGTAGATTA+AGG 0.362895 6:-10134607 MsaT030565.1:CDS
AGATGGTTTCCAATGAGCTT+TGG 0.402226 6:+10134994 None:intergenic
AGGCCTAGTGAGGTTGAGAT+TGG 0.413476 6:+10134319 None:intergenic
TTTGCAAATGTGTGCCCATT+TGG 0.423551 6:+10134493 None:intergenic
CTAAGCCTTCCAAAGCTCAT+TGG 0.430105 6:-10135003 MsaT030565.1:CDS
ACTATCATCTATTGCAAGAA+AGG 0.451301 6:-10134398 MsaT030565.1:CDS
CTGAGTCAGCTGCAACAAAC+AGG 0.456378 6:-10133846 MsaT030565.1:CDS
TTGAGATTGGATTCATCAAT+GGG 0.459066 6:+10134332 None:intergenic
AACATTGCTGAACAACTAGA+AGG 0.460555 6:-10134917 MsaT030565.1:CDS
GTTGAGATTGGATTCATCAA+TGG 0.467181 6:+10134331 None:intergenic
ATACACTTCATGGTACCAAA+TGG 0.473150 6:-10134508 MsaT030565.1:CDS
CAAAAGAGAACCTTTAAGTA+AGG 0.476977 6:-10134558 MsaT030565.1:CDS
TTTGAGGGACAGTGAAAATG+TGG 0.489859 6:-10133809 MsaT030565.1:CDS
GAACAACTAGAAGGAAGAAC+AGG 0.493534 6:-10134908 MsaT030565.1:intron
TCTTGGAGTAGGTGATACAT+AGG 0.495278 6:-10133755 None:intergenic
AAATCATTATCATGTGATCA+AGG 0.497071 6:-10134438 MsaT030565.1:CDS
GCTTGACAATGTGAACCAAA+TGG 0.505439 6:-10133929 MsaT030565.1:CDS
CCCATTTGATAACTAGGTAA+AGG 0.515252 6:+10134299 None:intergenic
TACACTTCATGGTACCAAAT+GGG 0.518845 6:-10134507 MsaT030565.1:CDS
ACCTTTAAGTAAGGAAGAAG+AGG 0.519621 6:-10134549 MsaT030565.1:CDS
TTGAATCTGAATGATTGGAT+TGG 0.533488 6:+10133887 None:intergenic
GTGATCAAGGCTAGAGGCAA+AGG 0.534505 6:-10134425 MsaT030565.1:CDS
AATCCAATCTCAACCTCACT+AGG 0.546026 6:-10134322 MsaT030565.1:CDS
AAACAACTTATCGCTGATCA+TGG 0.546186 6:-10134956 MsaT030565.1:CDS
TTGAGGGACAGTGAAAATGT+GGG 0.555649 6:-10133808 MsaT030565.1:CDS
CTTGGAGTAGGTGATACATA+GGG 0.561107 6:-10133754 None:intergenic
TTCATCAATGGGACTTGTGA+TGG 0.566032 6:+10134343 None:intergenic
TTTGCAAACACTTTCCTGGA+AGG 0.569534 6:-10134478 MsaT030565.1:CDS
GGTTTCCAATGAGCTTTGGA+AGG 0.572161 6:+10134998 None:intergenic
CATTCAGATTCAAACTCAGA+AGG 0.574102 6:-10133877 MsaT030565.1:CDS
TTAAGCTTAGCATCTTCAGA+TGG 0.584279 6:+10134977 None:intergenic
GCTGCAACAAACAGGAACAA+TGG 0.622569 6:-10133838 MsaT030565.1:CDS
TATCATGTGATCAAGGCTAG+AGG 0.651988 6:-10134431 MsaT030565.1:CDS
AACTAGGTAAAGGCCTAGTG+AGG 0.660873 6:+10134309 None:intergenic
GGAAAAGCTGTAGATTAAGG+TGG 0.661757 6:-10134604 MsaT030565.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr6 gene 10133756 10135059 10133756 ID=MsaG030565
Chr6 mRNA 10133756 10135059 10133756 ID=MsaT030565.1;Parent=MsaG030565
Chr6 exon 10133756 10134012 10133756 ID=MsaT030565.1.exon3;Parent=MsaT030565.1
Chr6 CDS 10133756 10134012 10133756 ID=cds.MsaT030565.1;Parent=MsaT030565.1
Chr6 exon 10134312 10134626 10134312 ID=MsaT030565.1.exon2;Parent=MsaT030565.1
Chr6 CDS 10134312 10134626 10134312 ID=cds.MsaT030565.1;Parent=MsaT030565.1
Chr6 exon 10134909 10135059 10134909 ID=MsaT030565.1.exon1;Parent=MsaT030565.1
Chr6 CDS 10134909 10135059 10134909 ID=cds.MsaT030565.1;Parent=MsaT030565.1
Gene Sequence

>MsaT030565.1

ATGGTCAAAAACAATGGAGGGAATTTTAGGAACACTAAGCCTTCCAAAGCTCATTGGAAACCATCTGAAGATGCTAAGCTTAAACAACTTATCGCTGATCATGGTGCTAAAAATTGGAACAACATTGCTGAACAACTAGAAGGAAGAACAGGGAAAAGCTGTAGATTAAGGTGGCTTAATCAGCTAGATCCTAGCATCAAAAGAGAACCTTTAAGTAAGGAAGAAGAGGAGATGCTTTTGCAGCTTCATACACTTCATGGTACCAAATGGGCACACATTTGCAAACACTTTCCTGGAAGGACAGACAATGCACTGAAAAATCATTATCATGTGATCAAGGCTAGAGGCAAAGGAACTACTATCATCTATTGCAAGAAAGGAAAGCTAACATATGAAATCCCAGCAAAATTTGCCATCACAAGTCCCATTGATGAATCCAATCTCAACCTCACTAGGCCTTTACCTAGTTTACCTCAAAAAAGAATGGCAGAAGCTGAATTTGCCAAAACTTGCAGTGCTATGAGAGAGCTTGACAATGTGAACCAAATGGAAAAGCTTAAGATTGCAGACCAATCCAATCATTCAGATTCAAACTCAGAAGGTTCATCATCTGAGTCAGCTGCAACAAACAGGAACAATGGATTAATTTTGAGGGACAGTGAAAATGTGGGAGATATGATTAAGATGCCATTTTTTGACTTTCTTGGAGTAGGTGATACATAG
Protein sequence

>MsaT030565.1

MVKNNGGNFRNTKPSKAHWKPSEDAKLKQLIADHGAKNWNNIAEQLEGRTGKSCRLRWLNQLDPSIKREPLSKEEEEMLLQLHTLHGTKWAHICKHFPGRTDNALKNHYHVIKARGKGTTIIYCKKGKLTYEIPAKFAITSPIDESNLNLTRPLPSLPQKRMAEAEFAKTCSAMRELDNVNQMEKLKIADQSNHSDSNSEGSSSESAATNRNNGLILRDSENVGDMIKMPFFDFLGVGDT*