AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG030592


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG030592 MtrunA17_Chr3g0078761 74.026 77 18 1 25 99 375 451 1.02e-30 115
MsaG030592 MtrunA17_Chr5g0446651 71.429 77 20 1 25 99 381 457 1.38e-28 108
MsaG030592 MtrunA17_Chr3g0102451 63.750 80 25 2 25 100 346 425 4.31e-23 93.2
MsaG030592 MtrunA17_Chr5g0433941 55.556 63 26 1 28 88 395 457 4.61e-16 73.2
MsaG030592 MtrunA17_Chr7g0239171 50.633 79 34 4 25 100 356 432 4.18e-14 67.4
MsaG030592 MtrunA17_Chr7g0239261 46.591 88 42 4 16 100 352 437 1.23e-13 66.2
MsaG030592 MtrunA17_Chr7g0239311 45.455 88 43 4 16 100 354 439 1.25e-13 66.2
MsaG030592 MtrunA17_Chr7g0239181 46.591 88 42 4 16 100 364 449 1.48e-13 65.9
MsaG030592 MtrunA17_Chr8g0367071 48.649 74 32 3 29 99 382 452 1.87e-13 65.9
MsaG030592 MtrunA17_Chr7g0239331 49.367 79 35 4 25 100 363 439 2.45e-13 65.5
MsaG030592 MtrunA17_Chr7g0239191 49.367 79 35 4 25 100 396 472 2.71e-13 65.1
MsaG030592 MtrunA17_Chr4g0058561 45.000 80 39 3 24 100 376 453 2.99e-13 65.1
MsaG030592 MtrunA17_Chr1g0172951 49.367 79 35 4 25 100 365 441 3.29e-13 65.1
MsaG030592 MtrunA17_Chr7g0239321 49.367 79 35 4 25 100 362 438 6.69e-13 64.3
MsaG030592 MtrunA17_Chr7g0239211 44.318 88 44 4 16 100 356 441 6.75e-13 63.9
MsaG030592 MtrunA17_Chr7g0239381 48.101 79 36 4 25 100 365 441 7.96e-13 63.9
MsaG030592 MtrunA17_Chr3g0112111 43.038 79 40 3 25 100 371 447 9.22e-13 63.5
MsaG030592 MtrunA17_Chr5g0428101 44.000 75 38 3 28 99 526 599 9.69e-13 63.5
MsaG030592 MtrunA17_Chr8g0376131 41.558 77 43 1 26 100 75 151 1.16e-12 63.2
MsaG030592 MtrunA17_Chr1g0175411 43.590 78 36 3 29 98 356 433 2.07e-12 62.8
MsaG030592 MtrunA17_Chr7g0236571 45.205 73 36 3 29 98 365 436 2.57e-12 62.4
MsaG030592 MtrunA17_Chr7g0236651 45.205 73 36 3 29 98 511 582 2.57e-12 62.4
MsaG030592 MtrunA17_Chr7g0236551 45.205 73 36 3 29 98 514 585 2.65e-12 62.4
MsaG030592 MtrunA17_Chr1g0175451 43.590 78 36 3 29 98 353 430 3.12e-12 62.4
MsaG030592 MtrunA17_Chr7g0239221 45.455 88 43 4 16 100 358 443 3.64e-12 62.0
MsaG030592 MtrunA17_Chr1g0175421 43.590 78 36 3 29 98 154 231 3.86e-12 62.0
MsaG030592 MtrunA17_Chr7g0236531 45.205 73 36 3 29 98 64 135 4.75e-12 61.6
MsaG030592 MtrunA17_Chr7g0236231 42.667 75 39 3 29 100 544 617 5.09e-12 61.6
MsaG030592 MtrunA17_Chr5g0414561 48.000 75 34 3 29 100 372 444 5.82e-12 61.6
MsaG030592 MtrunA17_Chr1g0206231 44.000 75 38 3 29 100 372 445 6.27e-12 61.2
MsaG030592 MtrunA17_Chr8g0361331 38.272 81 46 3 29 106 11 90 6.78e-12 58.5
MsaG030592 MtrunA17_Chr1g0206211 41.333 75 40 3 29 100 53 126 1.11e-11 59.3
MsaG030592 MtrunA17_Chr1g0206351 40.000 75 41 3 29 100 379 452 1.14e-11 60.5
MsaG030592 MtrunA17_Chr7g0236691 43.836 73 37 3 29 98 526 597 1.25e-11 60.5
MsaG030592 MtrunA17_Chr7g0236561 43.243 74 38 3 29 99 531 603 1.55e-11 60.1
MsaG030592 MtrunA17_Chr7g0239371 40.206 97 53 4 7 100 343 437 2.21e-11 59.7
MsaG030592 MtrunA17_Chr2g0280701 42.466 73 38 3 29 98 526 597 3.38e-11 59.3
MsaG030592 MtrunA17_Chr8g0366981 44.737 76 32 4 29 99 328 398 3.79e-11 58.9
MsaG030592 MtrunA17_Chr4g0048791 42.667 75 39 3 29 100 558 631 4.50e-11 58.9
MsaG030592 MtrunA17_Chr1g0202201 44.304 79 36 2 29 100 366 443 4.51e-11 58.9
MsaG030592 MtrunA17_Chr4g0048701 46.774 62 30 2 29 87 72 133 4.75e-11 56.6
MsaG030592 MtrunA17_Chr7g0236641 42.466 73 38 3 29 98 551 622 5.00e-11 58.9
MsaG030592 MtrunA17_Chr7g0239361 46.250 80 39 4 24 100 378 456 5.14e-11 58.9
MsaG030592 MtrunA17_Chr8g0340111 44.000 75 38 3 29 100 530 603 5.88e-11 58.5
MsaG030592 MtrunA17_Chr4g0055011 42.466 73 38 3 29 98 97 168 6.05e-11 58.5
MsaG030592 MtrunA17_Chr4g0042341 45.333 75 37 3 29 100 549 622 6.61e-11 58.5
MsaG030592 MtrunA17_Chr5g0428111 44.595 74 37 3 29 99 529 601 8.33e-11 58.2
MsaG030592 MtrunA17_Chr8g0340091 42.667 75 39 3 29 100 557 630 9.20e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG030592 AT5G55830.1 62.500 80 26 3 25 100 387 466 2.11e-21 89.0
MsaG030592 AT5G03140.1 48.529 68 33 1 25 90 396 463 1.15e-15 72.4
MsaG030592 AT2G43690.1 46.392 97 48 3 7 100 339 434 2.90e-15 71.2
MsaG030592 AT2G43690.3 46.392 97 48 3 7 100 339 434 2.90e-15 71.2
MsaG030592 AT2G43690.2 46.392 97 48 3 7 100 303 398 2.99e-15 71.2
MsaG030592 AT2G43700.1 45.455 88 44 3 16 100 347 433 1.12e-13 66.6
MsaG030592 AT2G43700.3 45.455 88 44 3 16 100 323 409 1.29e-13 66.6
MsaG030592 AT2G43700.5 45.455 88 44 3 16 100 323 409 1.29e-13 66.6
MsaG030592 AT2G43700.2 45.455 88 44 3 16 100 323 409 1.29e-13 66.6
MsaG030592 AT2G43700.4 45.455 88 44 3 16 100 323 409 1.29e-13 66.6
MsaG030592 AT3G59750.1 43.299 97 51 3 7 100 307 402 1.75e-13 66.2
MsaG030592 AT3G55550.1 44.944 89 43 4 16 100 359 445 1.79e-13 66.2
MsaG030592 AT1G70130.1 43.182 88 45 3 16 100 347 432 2.20e-13 65.9
MsaG030592 AT4G29050.2 42.045 88 46 3 16 100 371 456 5.13e-13 64.7
MsaG030592 AT4G29050.1 42.045 88 46 3 16 100 357 442 5.17e-13 64.7
MsaG030592 AT3G53380.1 54.688 64 26 2 28 88 401 464 8.96e-13 64.3
MsaG030592 AT3G59730.1 41.414 99 53 3 7 100 339 437 9.84e-13 63.9
MsaG030592 AT3G59700.1 41.237 97 53 3 7 100 342 437 1.18e-12 63.9
MsaG030592 AT5G59270.2 45.570 79 39 3 25 100 389 466 2.05e-12 63.2
MsaG030592 AT4G04570.3 49.315 73 33 3 29 98 209 280 2.65e-12 62.8
MsaG030592 AT5G59270.1 45.570 79 39 3 25 100 370 447 2.84e-12 62.8
MsaG030592 AT5G59270.3 45.570 79 39 3 25 100 373 450 2.84e-12 62.8
MsaG030592 AT3G59740.1 40.404 99 54 3 7 100 337 435 3.19e-12 62.8
MsaG030592 AT3G45860.1 45.333 75 37 3 29 100 376 449 3.59e-12 62.4
MsaG030592 AT2G37710.1 46.667 75 35 4 29 100 373 445 3.73e-12 62.4
MsaG030592 AT3G53810.1 48.000 75 34 4 29 100 373 445 4.80e-12 62.0
MsaG030592 AT4G02420.1 46.667 75 35 4 29 100 376 448 5.13e-12 62.0
MsaG030592 AT4G02410.1 48.000 75 34 4 29 100 381 453 5.13e-12 62.0
MsaG030592 AT5G59260.1 44.304 79 40 3 25 100 376 453 6.05e-12 61.6
MsaG030592 AT4G04570.2 49.315 73 33 3 29 98 373 444 8.40e-12 61.2
MsaG030592 AT5G06740.2 42.466 73 39 2 29 98 366 438 9.34e-12 61.2
MsaG030592 AT4G23280.1 44.000 75 38 3 29 100 369 442 9.35e-12 61.2
MsaG030592 AT4G11470.1 43.038 79 41 3 25 100 360 437 9.44e-12 61.2
MsaG030592 AT5G65600.1 45.349 86 40 4 17 98 364 446 9.54e-12 61.2
MsaG030592 AT5G06740.1 42.466 73 39 2 29 98 354 426 9.60e-12 61.2
MsaG030592 AT4G04510.2 49.315 73 33 3 29 98 366 437 9.87e-12 61.2
MsaG030592 AT4G04510.1 49.315 73 33 3 29 98 364 435 1.05e-11 61.2
MsaG030592 AT4G23280.2 44.000 75 38 3 29 100 367 440 1.05e-11 61.2
MsaG030592 AT4G04570.1 49.315 73 33 3 29 98 373 444 1.20e-11 60.8
MsaG030592 AT4G11480.2 44.304 79 40 3 25 100 345 422 1.54e-11 60.5
MsaG030592 AT4G04540.2 47.945 73 34 3 29 98 378 449 1.71e-11 60.5
MsaG030592 AT4G04540.3 47.945 73 34 3 29 98 378 449 1.76e-11 60.5
MsaG030592 AT5G10530.1 43.478 69 35 3 28 92 360 428 1.87e-11 60.5
MsaG030592 AT4G04540.1 47.945 73 34 3 29 98 378 449 2.23e-11 60.1
MsaG030592 AT4G11480.3 44.304 79 40 3 25 100 345 422 2.32e-11 60.1
MsaG030592 AT4G04540.4 47.945 73 34 3 29 98 349 420 2.40e-11 60.1
MsaG030592 AT4G11480.4 44.304 79 40 3 25 100 342 419 2.55e-11 60.1
MsaG030592 AT4G04500.2 49.315 73 33 3 29 98 370 441 2.88e-11 59.7
MsaG030592 AT4G04500.3 49.315 73 33 3 29 98 370 441 2.88e-11 59.7
MsaG030592 AT4G04500.1 49.315 73 33 3 29 98 370 441 3.18e-11 59.7
MsaG030592 AT5G01560.1 38.372 86 49 3 17 98 377 462 3.57e-11 59.7
MsaG030592 AT4G23200.2 42.500 80 42 3 24 100 356 434 4.15e-11 59.3
MsaG030592 AT4G11470.2 44.156 77 39 3 27 100 367 442 4.40e-11 59.3
MsaG030592 AT5G01550.1 41.333 75 40 3 29 99 406 480 5.12e-11 59.3
MsaG030592 AT4G23200.1 42.500 80 42 3 24 100 356 434 8.24e-11 58.5

Find 30 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTCTTGTTTATGATTTC+AGG 0.128468 6:-10539227 MsaT030592.1:CDS
CGGAATTGTCCATTGATTTA+AGG 0.144179 6:-10539299 MsaT030592.1:CDS
ACAACATAGGATTTGATTTC+AGG 0.210370 6:-10539107 MsaT030592.1:CDS
TTGGCATTTCTTCAAACAAC+TGG 0.362259 6:+10540052 None:intergenic
CAAACAAACACTTGACACTT+TGG 0.363294 6:+10540033 None:intergenic
CTTAAATCAATGGACAATTC+CGG 0.374658 6:+10539300 None:intergenic
CAAAGTGTCAAGTGTTTGTT+TGG 0.385201 6:-10540032 MsaT030592.1:CDS
CAAGAATTCAGTTCAGTTGC+TGG 0.392317 6:-10539274 MsaT030592.1:CDS
CTCAACAATTTCCCCATCTC+AGG 0.401873 6:+10539168 None:intergenic
ATTCTTGTGCCTTAAATCAA+TGG 0.404681 6:+10539290 None:intergenic
TTAAATCAATGGACAATTCC+GGG 0.442855 6:+10539301 None:intergenic
ATTTACAAATGGAAACTCAA+TGG 0.457763 6:+10539069 None:intergenic
GAACCATCGTTGCAGTGAAA+AGG 0.466457 6:-10539359 MsaT030592.1:CDS
CAATAGATCTGATTTACAAA+TGG 0.491687 6:+10539058 None:intergenic
AGGTCGAGGCATTCTAATGA+AGG 0.512079 6:-10539339 MsaT030592.1:CDS
ATTCAGTTCAGTTGCTGGGT+AGG 0.520137 6:-10539269 MsaT030592.1:CDS
ATTTACAAAGAACCTGAGAT+GGG 0.521881 6:-10539180 MsaT030592.1:CDS
AAGAATTCAGTTCAGTTGCT+GGG 0.547293 6:-10539273 MsaT030592.1:CDS
GATTTACAAAGAACCTGAGA+TGG 0.552355 6:-10539181 MsaT030592.1:CDS
TTTGGAATGTTAATGTCAGT+AGG 0.561791 6:-10540014 MsaT030592.1:intron
AGATGGGGAAATTGTTGAGT+TGG 0.566828 6:-10539164 MsaT030592.1:CDS
AGGGAAGACCGAGTTTCTCC+CGG 0.570730 6:-10539319 MsaT030592.1:CDS
GGACAATTCCGGGAGAAACT+CGG 0.573970 6:+10539311 None:intergenic
TCTCAGAATGACAACAACAT+AGG 0.589851 6:-10539120 MsaT030592.1:CDS
ATGTTGTTGTCATTCTGAGA+AGG 0.593530 6:+10539123 None:intergenic
GTGTGTTGAGAAAGATGAGC+TGG 0.603587 6:-10539247 MsaT030592.1:CDS
TCGTTGCAGTGAAAAGGTCG+AGG 0.620731 6:-10539353 MsaT030592.1:CDS
CATTTCTTCAAACAACTGGA+CGG 0.623647 6:+10540056 None:intergenic
GGTCGAGGCATTCTAATGAA+GGG 0.626484 6:-10539338 MsaT030592.1:CDS
TTTACAAAGAACCTGAGATG+GGG 0.693809 6:-10539179 MsaT030592.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr6 gene 10539071 10540091 10539071 ID=MsaG030592
Chr6 mRNA 10539071 10540091 10539071 ID=MsaT030592.1;Parent=MsaG030592
Chr6 exon 10539071 10539380 10539071 ID=MsaT030592.1.exon2;Parent=MsaT030592.1
Chr6 CDS 10539071 10539380 10539071 ID=cds.MsaT030592.1;Parent=MsaT030592.1
Chr6 exon 10540015 10540091 10540015 ID=MsaT030592.1.exon1;Parent=MsaT030592.1
Chr6 CDS 10540015 10540091 10540015 ID=cds.MsaT030592.1;Parent=MsaT030592.1
Gene Sequence

>MsaT030592.1

ATGTCGCTGTCTGCCGTCCAGTTGTTTGAAGAAATGCCAAAGTGTCAAGTGTTTGTTTGGAATGTTAATGTCAGTAGAACCATCGTTGCAGTGAAAAGGTCGAGGCATTCTAATGAAGGGAAGACCGAGTTTCTCCCGGAATTGTCCATTGATTTAAGGCACAAGAATTCAGTTCAGTTGCTGGGTAGGTGTGTTGAGAAAGATGAGCTGGTTCTTGTTTATGATTTCAGGCCTAATAGCAGCTTTGAAAAGATGATTTACAAAGAACCTGAGATGGGGAAATTGTTGAGTTGGTCTCAGAATCCATTTTTACCTTCTCAGAATGACAACAACATAGGATTTGATTTCAGGAATATCAACGAGAATCCATTGAGTTTCCATTTGTAA

Protein sequence

>MsaT030592.1

MSLSAVQLFEEMPKCQVFVWNVNVSRTIVAVKRSRHSNEGKTEFLPELSIDLRHKNSVQLLGRCVEKDELVLVYDFRPNSSFEKMIYKEPEMGKLLSWSQNPFLPSQNDNNIGFDFRNINENPLSFHL*