AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG030595


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG030595 MtrunA17_Chr3g0078761 71.333 150 41 1 301 448 302 451 1.73e-62 215
MsaG030595 MtrunA17_Chr5g0446651 70.667 150 42 1 301 448 308 457 1.15e-60 210
MsaG030595 MtrunA17_Chr3g0102451 48.810 168 75 4 290 449 261 425 6.18e-39 149
MsaG030595 MtrunA17_Chr5g0433941 41.447 152 85 3 290 437 306 457 2.03e-24 107
MsaG030595 MtrunA17_Chr3g0112111 33.523 176 103 6 279 449 281 447 2.17e-18 88.2
MsaG030595 MtrunA17_Chr7g0239211 36.111 180 104 7 275 449 268 441 3.64e-18 87.4
MsaG030595 MtrunA17_Chr4g0058561 34.783 138 84 4 315 449 319 453 6.46e-18 86.7
MsaG030595 MtrunA17_Chr7g0239311 37.576 165 92 7 290 449 281 439 6.65e-18 86.7
MsaG030595 MtrunA17_Chr7g0239171 35.088 171 102 6 283 449 267 432 1.08e-17 85.9
MsaG030595 MtrunA17_Chr1g0170201 34.247 219 131 7 231 438 231 447 1.80e-17 85.5
MsaG030595 MtrunA17_Chr7g0239221 36.111 180 104 7 275 449 270 443 2.09e-17 85.1
MsaG030595 MtrunA17_Chr7g0239181 37.063 143 82 5 310 449 312 449 3.68e-17 84.3
MsaG030595 MtrunA17_Chr7g0239191 35.000 180 106 7 275 449 299 472 5.22e-17 84.0
MsaG030595 MtrunA17_Chr7g0239261 36.970 165 93 7 290 449 279 437 5.96e-17 83.6
MsaG030595 MtrunA17_Chr1g0172951 36.111 180 104 7 275 449 268 441 1.06e-16 82.8
MsaG030595 MtrunA17_Chr7g0239381 35.000 160 90 6 294 449 292 441 2.81e-16 81.6
MsaG030595 MtrunA17_Chr7g0239331 35.294 170 100 7 285 449 275 439 5.69e-16 80.9
MsaG030595 MtrunA17_Chr7g0239321 31.351 185 112 7 269 449 265 438 1.00e-15 80.1
MsaG030595 MtrunA17_Chr5g0414561 37.500 144 79 5 310 449 308 444 1.13e-15 79.7
MsaG030595 MtrunA17_Chr8g0366981 39.669 121 59 5 335 448 285 398 1.85e-15 79.0
MsaG030595 MtrunA17_Chr1g0175411 38.333 120 66 3 336 447 314 433 3.99e-15 78.2
MsaG030595 MtrunA17_Chr1g0175451 36.975 119 68 3 336 447 312 430 4.15e-15 77.8
MsaG030595 MtrunA17_Chr7g0274651 33.333 171 101 5 287 447 298 465 5.66e-15 77.4
MsaG030595 MtrunA17_Chr4g0049601 27.907 172 112 4 286 448 287 455 5.81e-15 77.4
MsaG030595 MtrunA17_Chr8g0366931 39.048 105 61 2 335 436 9 113 6.30e-15 75.9
MsaG030595 MtrunA17_Chr7g0239371 32.934 167 98 7 290 449 278 437 6.37e-15 77.4
MsaG030595 MtrunA17_Chr1g0175421 37.500 120 67 3 336 447 112 231 9.31e-15 76.3
MsaG030595 MtrunA17_Chr1g0206211 34.513 113 71 2 339 449 15 126 9.48e-15 72.8
MsaG030595 MtrunA17_Chr2g0280701 30.682 176 107 6 283 449 430 599 1.43e-14 76.6
MsaG030595 MtrunA17_Chr7g0236571 38.182 110 65 2 340 447 328 436 1.93e-14 75.9
MsaG030595 MtrunA17_Chr4g0049611 37.815 119 66 4 334 448 325 439 2.01e-14 75.9
MsaG030595 MtrunA17_Chr7g0236651 37.838 111 66 2 339 447 473 582 2.36e-14 75.9
MsaG030595 MtrunA17_Chr7g0236561 37.838 111 66 2 340 448 494 603 2.36e-14 75.9
MsaG030595 MtrunA17_Chr4g0049581 38.679 106 62 2 335 437 334 439 2.66e-14 75.5
MsaG030595 MtrunA17_Chr8g0366971 38.636 132 67 5 324 448 48 172 2.71e-14 74.3
MsaG030595 MtrunA17_Chr8g0376131 35.821 134 82 2 320 449 18 151 5.04e-14 73.6
MsaG030595 MtrunA17_Chr7g0236531 36.937 111 67 2 339 447 26 135 7.65e-14 72.8
MsaG030595 MtrunA17_Chr7g0236551 36.937 111 67 2 339 447 476 585 9.70e-14 73.9
MsaG030595 MtrunA17_Chr6g0475091 29.341 167 109 4 287 447 515 678 1.38e-13 73.6
MsaG030595 MtrunA17_Chr7g0236691 37.273 110 66 2 340 447 489 597 2.39e-13 72.8
MsaG030595 MtrunA17_Chr7g0236341 37.273 110 66 2 340 447 507 615 2.74e-13 72.4
MsaG030595 MtrunA17_Chr7g0236231 36.111 108 66 2 344 449 511 617 3.03e-13 72.4
MsaG030595 MtrunA17_Chr1g0206231 33.628 113 72 2 339 449 334 445 3.15e-13 72.0
MsaG030595 MtrunA17_Chr6g0474901 30.488 164 105 5 290 447 503 663 3.44e-13 72.0
MsaG030595 MtrunA17_Chr1g0202201 33.766 154 91 5 305 449 292 443 4.19e-13 71.6
MsaG030595 MtrunA17_Chr4g0048701 36.364 99 61 1 340 436 35 133 4.45e-13 66.6
MsaG030595 MtrunA17_Chr8g0340071 35.714 112 69 2 340 449 491 601 5.54e-13 71.6
MsaG030595 MtrunA17_Chr7g0233091 39.496 119 66 3 337 449 106 224 5.74e-13 71.2
MsaG030595 MtrunA17_Chr7g0239201 37.963 108 64 3 337 441 28 135 5.77e-13 66.2
MsaG030595 MtrunA17_Chr7g0274661 31.169 154 87 5 307 447 321 468 7.36e-13 70.9
MsaG030595 MtrunA17_Chr7g0236641 36.364 110 67 2 340 447 514 622 9.56e-13 70.9
MsaG030595 MtrunA17_Chr5g0428101 36.937 111 67 2 340 448 490 599 1.22e-12 70.5
MsaG030595 MtrunA17_Chr6g0474811 30.435 161 103 4 295 449 515 672 1.35e-12 70.5
MsaG030595 MtrunA17_Chr4g0048661 34.821 112 70 2 340 449 26 136 1.44e-12 68.9
MsaG030595 MtrunA17_Chr8g0340091 35.714 112 69 2 340 449 520 630 1.47e-12 70.1
MsaG030595 MtrunA17_Chr1g0206351 29.193 161 108 4 294 449 293 452 1.53e-12 69.7
MsaG030595 MtrunA17_Chr8g0347571 34.513 113 71 2 337 447 556 667 1.57e-12 70.1
MsaG030595 MtrunA17_Chr8g0340111 34.821 112 70 2 340 449 493 603 1.58e-12 70.1
MsaG030595 MtrunA17_Chr6g0475001 29.878 164 106 4 290 447 509 669 1.67e-12 69.7
MsaG030595 MtrunA17_Chr8g0340081 35.714 112 69 2 340 449 495 605 1.78e-12 69.7
MsaG030595 MtrunA17_Chr8g0361611 29.891 184 120 3 268 449 370 546 1.83e-12 69.7
MsaG030595 MtrunA17_Chr4g0049561 33.333 117 72 3 335 448 331 444 1.86e-12 69.7
MsaG030595 MtrunA17_Chr7g0239361 38.261 115 67 4 338 449 343 456 2.21e-12 69.3
MsaG030595 MtrunA17_Chr2g0280791 31.034 116 77 2 340 453 510 624 2.97e-12 69.3
MsaG030595 MtrunA17_Chr6g0474871 34.513 113 71 2 337 447 551 662 3.19e-12 68.9
MsaG030595 MtrunA17_Chr5g0443691 36.607 112 67 2 340 447 87 198 3.62e-12 68.2
MsaG030595 MtrunA17_Chr7g0236511 36.697 109 66 2 339 445 489 596 4.34e-12 68.6
MsaG030595 MtrunA17_Chr8g0367071 34.043 188 98 7 284 448 268 452 4.39e-12 68.6
MsaG030595 MtrunA17_Chr7g0236161 32.143 112 73 2 340 449 459 569 4.73e-12 68.6
MsaG030595 MtrunA17_Chr7g0236201 32.143 112 73 2 340 449 459 569 4.87e-12 68.6
MsaG030595 MtrunA17_Chr7g0236121 32.143 112 73 2 340 449 493 603 4.93e-12 68.6
MsaG030595 MtrunA17_Chr6g0475111 29.310 174 112 5 285 449 515 686 5.06e-12 68.6
MsaG030595 MtrunA17_Chr6g0474861 32.743 113 73 2 337 447 272 383 6.53e-12 67.8
MsaG030595 MtrunA17_Chr8g0340051 35.714 112 69 2 340 449 17 127 6.75e-12 66.6
MsaG030595 MtrunA17_Chr2g0315151 32.727 110 72 1 340 447 654 763 6.93e-12 68.2
MsaG030595 MtrunA17_Chr7g0274261 33.835 133 83 4 320 449 496 626 7.29e-12 67.8
MsaG030595 MtrunA17_Chr3g0098401 38.843 121 66 3 340 457 66 181 7.67e-12 63.9
MsaG030595 MtrunA17_Chr4g0042441 34.906 106 65 3 345 447 493 597 7.81e-12 67.8
MsaG030595 MtrunA17_Chr4g0048641 38.384 99 59 1 340 436 476 574 8.02e-12 67.8
MsaG030595 MtrunA17_Chr4g0055011 33.636 110 70 2 340 447 60 168 8.07e-12 67.0
MsaG030595 MtrunA17_Chr3g0084421 34.821 112 70 2 340 449 451 561 9.19e-12 67.4
MsaG030595 MtrunA17_Chr8g0361261 36.538 104 63 2 348 449 534 636 1.01e-11 67.4
MsaG030595 MtrunA17_Chr8g0361301 36.538 104 63 2 348 449 503 605 1.04e-11 67.4
MsaG030595 MtrunA17_Chr3g0084431 33.929 112 71 2 340 449 483 593 1.18e-11 67.4
MsaG030595 MtrunA17_Chr4g0048731 34.653 101 64 1 340 438 35 135 1.24e-11 65.9
MsaG030595 MtrunA17_Chr6g0455651 40.179 112 58 5 339 447 105 210 1.26e-11 66.6
MsaG030595 MtrunA17_Chr3g0084661 33.036 112 73 1 340 449 21 132 1.33e-11 65.9
MsaG030595 MtrunA17_Chr7g0251001 32.215 149 91 5 295 437 1 145 1.35e-11 66.2
MsaG030595 MtrunA17_Chr4g0066761 32.331 133 85 3 321 448 39 171 1.51e-11 65.9
MsaG030595 MtrunA17_Chr1g0206361 30.726 179 102 6 287 448 268 441 1.82e-11 66.6
MsaG030595 MtrunA17_Chr3g0111581 31.405 121 69 3 340 447 57 176 1.83e-11 65.5
MsaG030595 MtrunA17_Chr1g0190581 34.783 115 71 3 338 449 508 621 1.95e-11 66.6
MsaG030595 MtrunA17_Chr1g0160921 37.255 102 62 1 338 437 38 139 2.20e-11 65.5
MsaG030595 MtrunA17_Chr2g0280781 28.144 167 105 6 295 449 446 609 2.27e-11 66.2
MsaG030595 MtrunA17_Chr2g0280831 31.897 116 76 2 340 453 84 198 2.27e-11 65.5
MsaG030595 MtrunA17_Chr3g0084411 33.929 112 71 2 340 449 488 598 2.28e-11 66.2
MsaG030595 MtrunA17_Chr4g0048791 33.929 112 71 2 340 449 521 631 2.34e-11 66.2
MsaG030595 MtrunA17_Chr1g0206421 30.070 143 90 4 310 447 188 325 2.37e-11 65.9
MsaG030595 MtrunA17_Chr4g0048761 37.374 99 60 1 340 436 523 621 2.51e-11 65.9
MsaG030595 MtrunA17_Chr2g0286281 37.273 110 64 3 343 448 80 188 2.91e-11 65.5
MsaG030595 MtrunA17_Chr4g0049551 32.558 172 103 5 287 448 289 457 2.97e-11 65.9
MsaG030595 MtrunA17_Chr8g0361251 33.036 112 72 2 340 449 495 605 3.18e-11 65.9
MsaG030595 MtrunA17_Chr7g0251061 31.176 170 99 5 283 437 268 434 3.47e-11 65.5
MsaG030595 MtrunA17_Chr8g0342071 30.769 156 102 3 294 447 396 547 3.48e-11 65.9
MsaG030595 MtrunA17_Chr3g0143961 34.821 112 69 2 340 448 56 166 3.71e-11 64.7
MsaG030595 MtrunA17_Chr2g0324471 32.738 168 101 7 287 449 307 467 3.96e-11 65.5
MsaG030595 MtrunA17_Chr6g0467301 34.483 116 70 4 335 447 477 589 4.76e-11 65.5
MsaG030595 MtrunA17_Chr5g0428111 34.234 111 70 2 340 448 492 601 5.55e-11 65.1
MsaG030595 MtrunA17_Chr8g0358081 35.052 97 61 1 338 432 448 544 6.26e-11 65.1
MsaG030595 MtrunA17_Chr6g0467281 34.483 116 70 4 335 447 472 584 7.02e-11 64.7
MsaG030595 MtrunA17_Chr2g0280771 33.036 112 72 2 340 449 471 581 7.57e-11 64.7
MsaG030595 MtrunA17_Chr6g0452761 31.967 122 71 2 330 439 111 232 7.76e-11 64.3
MsaG030595 MtrunA17_Chr5g0407721 35.593 118 72 3 335 448 346 463 8.24e-11 64.3
MsaG030595 MtrunA17_Chr1g0206391 34.513 113 71 2 339 449 28 139 9.59e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG030595 AT5G55830.1 47.586 145 70 4 309 449 324 466 3.01e-31 127
MsaG030595 AT3G59730.1 30.631 222 140 7 238 449 220 437 5.62e-20 93.2
MsaG030595 AT5G03140.1 35.583 163 96 3 286 439 301 463 6.24e-20 93.6
MsaG030595 AT3G53380.1 35.443 158 98 3 283 437 308 464 2.91e-19 91.7
MsaG030595 AT4G29050.1 36.628 172 99 5 282 449 277 442 4.53e-18 87.8
MsaG030595 AT4G29050.2 36.628 172 99 5 282 449 291 456 5.22e-18 87.4
MsaG030595 AT3G59700.1 35.714 168 99 5 286 449 275 437 8.28e-18 87.0
MsaG030595 AT3G59750.1 32.663 199 127 5 256 449 206 402 2.48e-17 85.5
MsaG030595 AT3G59740.1 33.735 166 100 5 290 449 274 435 4.02e-17 84.7
MsaG030595 AT3G55550.1 40.741 135 72 6 321 449 313 445 6.87e-17 84.0
MsaG030595 AT1G70130.1 34.132 167 100 5 287 449 272 432 8.43e-17 83.6
MsaG030595 AT5G65600.1 33.140 172 99 6 289 447 278 446 2.39e-16 82.4
MsaG030595 AT5G10530.1 31.737 167 101 5 288 441 262 428 6.05e-16 80.9
MsaG030595 AT1G15530.1 30.556 180 110 4 270 440 278 451 1.68e-15 79.7
MsaG030595 AT5G01560.1 32.099 162 103 5 291 448 305 463 3.43e-15 78.6
MsaG030595 AT2G43700.3 34.756 164 94 7 292 449 253 409 9.09e-15 77.4
MsaG030595 AT2G43700.5 34.756 164 94 7 292 449 253 409 9.09e-15 77.4
MsaG030595 AT2G43700.2 34.756 164 94 7 292 449 253 409 9.09e-15 77.4
MsaG030595 AT2G43700.4 34.756 164 94 7 292 449 253 409 9.09e-15 77.4
MsaG030595 AT5G01550.1 31.214 173 105 5 287 448 311 480 9.58e-15 77.4
MsaG030595 AT4G04540.3 31.461 178 111 6 280 447 273 449 9.89e-15 77.0
MsaG030595 AT2G43700.1 34.756 164 94 7 292 449 277 433 1.00e-14 77.0
MsaG030595 AT2G43690.1 35.329 167 101 5 286 449 272 434 1.02e-14 77.0
MsaG030595 AT2G43690.3 35.329 167 101 5 286 449 272 434 1.02e-14 77.0
MsaG030595 AT2G43690.2 35.329 167 101 5 286 449 236 398 1.08e-14 77.0
MsaG030595 AT4G04540.2 31.461 178 111 6 280 447 273 449 1.21e-14 76.6
MsaG030595 AT4G04540.1 31.461 178 111 6 280 447 273 449 1.22e-14 77.0
MsaG030595 AT5G59270.1 39.655 116 65 4 337 449 334 447 2.09e-14 76.3
MsaG030595 AT5G59270.3 39.655 116 65 4 337 449 337 450 2.19e-14 76.3
MsaG030595 AT5G59270.2 39.655 116 65 4 337 449 353 466 2.21e-14 76.3
MsaG030595 AT1G61860.1 38.261 115 68 2 336 447 69 183 2.45e-14 75.1
MsaG030595 AT3G08870.2 34.615 130 81 3 322 447 358 487 3.20e-14 75.9
MsaG030595 AT3G08870.1 34.615 130 81 3 322 447 337 466 3.22e-14 75.5
MsaG030595 AT5G06740.2 36.207 116 71 2 334 447 324 438 4.37e-14 75.1
MsaG030595 AT5G06740.1 36.207 116 71 2 334 447 312 426 4.42e-14 75.1
MsaG030595 AT4G02420.1 40.000 110 61 4 343 449 341 448 5.67e-14 74.7
MsaG030595 AT2G37710.1 38.596 114 65 4 339 449 334 445 5.80e-14 74.7
MsaG030595 AT5G24080.3 31.677 161 95 7 295 447 347 500 6.63e-14 74.7
MsaG030595 AT5G24080.1 31.677 161 95 7 295 447 347 500 6.63e-14 74.7
MsaG030595 AT5G24080.2 31.677 161 95 7 295 447 474 627 8.89e-14 74.3
MsaG030595 AT4G04570.3 34.320 169 101 5 288 447 113 280 9.50e-14 73.2
MsaG030595 AT4G04570.2 34.320 169 101 5 288 447 277 444 1.29e-13 73.6
MsaG030595 AT4G04570.1 34.320 169 101 5 288 447 277 444 2.16e-13 73.2
MsaG030595 AT3G53810.1 38.596 114 65 4 339 449 334 445 2.57e-13 72.8
MsaG030595 AT4G04540.4 37.838 111 66 2 339 447 311 420 2.67e-13 72.8
MsaG030595 AT5G59260.1 37.931 116 67 4 337 449 340 453 3.16e-13 72.4
MsaG030595 AT1G16110.1 32.620 187 102 7 276 440 338 522 6.01e-13 71.6
MsaG030595 AT4G02410.1 39.091 110 62 4 343 449 346 453 8.68e-13 71.2
MsaG030595 AT4G04500.2 38.739 111 65 2 339 447 332 441 9.87e-13 70.5
MsaG030595 AT4G04500.3 38.739 111 65 2 339 447 332 441 9.87e-13 70.5
MsaG030595 AT4G04500.1 38.739 111 65 2 339 447 332 441 1.05e-12 70.9
MsaG030595 AT4G23220.1 25.561 223 153 7 233 449 219 434 1.14e-12 70.9
MsaG030595 AT2G32800.1 36.800 125 70 4 334 449 97 221 1.63e-12 70.5
MsaG030595 AT1G79680.1 38.053 113 66 3 338 447 419 530 2.31e-12 69.7
MsaG030595 AT4G31110.2 36.290 124 75 3 328 448 407 529 2.80e-12 69.7
MsaG030595 AT4G31110.1 36.290 124 75 3 328 448 429 551 2.94e-12 69.7
MsaG030595 AT3G45860.1 38.261 115 64 5 339 449 338 449 3.05e-12 69.3
MsaG030595 AT1G61400.1 29.167 168 102 4 281 436 424 586 3.08e-12 69.7
MsaG030595 AT1G61400.2 29.167 168 102 4 281 436 424 586 3.15e-12 69.3
MsaG030595 AT4G04510.1 39.640 111 64 2 339 447 326 435 4.76e-12 68.9
MsaG030595 AT4G04510.2 39.640 111 64 2 339 447 328 437 5.16e-12 68.6
MsaG030595 AT4G23280.2 32.540 126 82 2 326 449 316 440 8.10e-12 68.2
MsaG030595 AT1G16130.1 32.895 152 84 5 306 440 356 506 8.97e-12 68.2
MsaG030595 AT1G19390.1 38.793 116 67 3 328 440 427 541 9.79e-12 67.8
MsaG030595 AT4G23280.1 34.513 113 71 2 339 449 331 442 1.00e-11 67.8
MsaG030595 AT1G69730.1 38.393 112 65 3 340 448 435 545 1.05e-11 67.8
MsaG030595 AT1G53420.1 30.178 169 109 5 282 447 559 721 1.41e-11 67.4
MsaG030595 AT3G59730.2 28.571 182 118 6 238 411 220 397 1.43e-11 66.6
MsaG030595 AT4G23150.1 35.965 114 68 4 339 449 323 434 1.45e-11 67.4
MsaG030595 AT5G13160.1 38.182 110 63 3 343 448 77 185 1.47e-11 66.6
MsaG030595 AT4G31100.1 35.484 124 76 3 328 448 420 542 1.80e-11 67.0
MsaG030595 AT4G23240.1 30.208 192 124 6 257 444 244 429 2.17e-11 66.6
MsaG030595 AT3G45430.2 32.530 166 98 7 290 449 284 441 2.22e-11 66.6
MsaG030595 AT3G45430.3 32.530 166 98 7 290 449 284 441 2.22e-11 66.6
MsaG030595 AT3G45430.1 32.530 166 98 7 290 449 284 441 2.22e-11 66.6
MsaG030595 AT4G23290.1 31.818 154 89 3 311 449 266 418 2.36e-11 66.6
MsaG030595 AT4G23290.2 31.818 154 89 3 311 449 309 461 2.47e-11 66.6
MsaG030595 AT1G61380.2 24.719 178 117 5 281 449 270 439 2.92e-11 66.2
MsaG030595 AT1G61380.1 24.719 178 117 5 281 449 417 586 3.07e-11 66.2
MsaG030595 AT4G11480.2 39.474 114 64 4 339 449 311 422 3.12e-11 65.9
MsaG030595 AT4G11480.4 39.474 114 64 4 339 449 308 419 3.35e-11 66.2
MsaG030595 AT4G11480.3 39.474 114 64 4 339 449 311 422 3.64e-11 65.9
MsaG030595 AT3G14840.2 31.757 148 95 3 305 447 623 769 5.42e-11 65.9
MsaG030595 AT4G23180.3 35.965 114 68 4 339 449 335 446 6.37e-11 65.1
MsaG030595 AT4G23180.2 35.965 114 68 4 339 449 335 446 6.46e-11 65.1
MsaG030595 AT5G18610.1 38.053 113 65 3 340 448 71 182 6.60e-11 65.1
MsaG030595 AT5G18610.2 38.053 113 65 3 340 448 71 182 6.60e-11 65.1
MsaG030595 AT5G18610.3 38.053 113 65 3 340 448 71 182 6.60e-11 65.1
MsaG030595 AT4G23180.1 35.965 114 68 4 339 449 335 446 6.88e-11 65.1
MsaG030595 AT1G70740.1 36.449 107 65 2 345 449 55 160 7.60e-11 64.3
MsaG030595 AT4G11470.2 35.398 113 70 2 339 449 331 442 8.35e-11 64.7
MsaG030595 AT4G11470.1 35.398 113 70 2 339 449 326 437 8.61e-11 64.7
MsaG030595 AT1G70740.2 38.947 95 56 1 345 437 43 137 8.68e-11 64.3

Find 84 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAATTGTCCATTGATTTA+AGG 0.144179 6:-10570061 MsaT030595.1:CDS
TGGTTCTTGTTTATGATTTC+AGG 0.150742 6:-10569989 MsaT030595.1:CDS
TGATGAAACTTTGCAGTTTA+AGG 0.198804 6:-10570600 MsaT030595.1:CDS
ACAACATAGGATTTGATTTC+AGG 0.210370 6:-10569869 MsaT030595.1:CDS
AGAAGCGAGGTGAAGATTTA+TGG 0.220995 6:+10571146 None:intergenic
AACAAGACTAAACTTCTTCT+TGG 0.250562 6:+10570379 None:intergenic
GCAAATCTGCCATTTGATTA+AGG 0.261700 6:+10571064 None:intergenic
CCGTAACCAACAATTCTTCT+AGG 0.288996 6:+10570185 None:intergenic
CTGAAAAGGCACACTGTTGC+TGG 0.317337 6:+10571355 None:intergenic
TAAACTCAACATGTTGAATA+AGG 0.343835 6:+10570670 None:intergenic
AACACAAATCAATTCACTAT+AGG 0.349909 6:-10570523 MsaT030595.1:CDS
GTTTATCTGTTGTGGAGTTT+TGG 0.354890 6:-10570652 MsaT030595.1:CDS
TTCTGTGTTGTTCGCTGAAA+AGG 0.364782 6:+10571341 None:intergenic
ACAGTTTGATCGCAGAGAAC+TGG 0.372145 6:-10570231 MsaT030595.1:CDS
CTTAAATCAATGGACAATTC+CGG 0.374658 6:+10570062 None:intergenic
ACACAAATCAATTCACTATA+GGG 0.378183 6:-10570522 MsaT030595.1:CDS
CAAGAATTCAGTTCAGTTGC+TGG 0.392317 6:-10570036 MsaT030595.1:CDS
ATTTACAAAGAACCTGAGAT+AGG 0.402614 6:-10569942 MsaT030595.1:CDS
TTTATCTTCCTGATAATCTT+CGG 0.403973 6:+10570446 None:intergenic
ATTCTTGTGCCTTAAATCAA+TGG 0.404681 6:+10570052 None:intergenic
GTTGATTGTTATTTATCAAA+TGG 0.409268 6:-10570728 MsaT030595.1:CDS
TCTTGGTGATTCTCTGGTAG+TGG 0.411091 6:+10571315 None:intergenic
GTTGAAGAAAAGATGGAAAT+GGG 0.415151 6:-10571498 MsaT030595.1:CDS
AGTTGAAGAAAAGATGGAAA+TGG 0.416895 6:-10571499 MsaT030595.1:CDS
ACATTCTCTTGGTGATTCTC+TGG 0.417676 6:+10571309 None:intergenic
TTCTGGATCTGATTTACAAA+TGG 0.420232 6:+10569820 None:intergenic
CTTGGTGATTCTCTGGTAGT+GGG 0.423532 6:+10571316 None:intergenic
TTTCATCCTAGAAGAATTGT+TGG 0.425698 6:-10570191 MsaT030595.1:CDS
CTCAACAATTTCCCTATCTC+AGG 0.427077 6:+10569930 None:intergenic
TGAAAATGATCTAAAGTAAG+AGG 0.431084 6:+10571453 None:intergenic
CCTAGAAGAATTGTTGGTTA+CGG 0.439362 6:-10570185 MsaT030595.1:CDS
TTAAATCAATGGACAATTCC+GGG 0.442855 6:+10570063 None:intergenic
GATAAATAACAATCAACAAC+TGG 0.447431 6:+10570734 None:intergenic
GAAGCGAGGTGAAGATTTAT+GGG 0.448315 6:+10571147 None:intergenic
GGAGTTGAACCAATCGGGTA+AGG 0.454353 6:+10571093 None:intergenic
ACAAGCAACAAACCAGGTTT+CGG 0.455176 6:+10570259 None:intergenic
ATTTACAAATGGAAACTCAA+TGG 0.457763 6:+10569831 None:intergenic
CAGAGCAATTCTCAATCGTT+GGG 0.462995 6:-10571030 MsaT030595.1:CDS
TCCCTTCCTCCTTAATCAAA+TGG 0.465674 6:-10571073 MsaT030595.1:CDS
GCAGAGCAATTCTCAATCGT+TGG 0.468864 6:-10571031 MsaT030595.1:CDS
ATTAACGAATCAGTGAGAAT+TGG 0.486037 6:+10571237 None:intergenic
TATGGAAGTTGAAGAAAAGA+TGG 0.486088 6:-10571505 MsaT030595.1:CDS
ATAAATGAGATAAACGTTCT+CGG 0.491590 6:-10570428 MsaT030595.1:CDS
GAACCATCGCTGCAGTGAAA+AGG 0.497106 6:-10570121 MsaT030595.1:CDS
ACTAAAACCCCTTACCCGAT+TGG 0.500735 6:-10571102 MsaT030595.1:CDS
TTTAGTCGGCGACGATAGCA+TGG 0.503418 6:-10571196 MsaT030595.1:CDS
GGAAGGGAGTTGAACCAATC+GGG 0.505039 6:+10571088 None:intergenic
TAAATGAGATAAACGTTCTC+GGG 0.508510 6:-10570427 MsaT030595.1:CDS
AGGAAGGGAGTTGAACCAAT+CGG 0.510040 6:+10571087 None:intergenic
AGATAGGGAAATTGTTGAGT+TGG 0.511095 6:-10569926 MsaT030595.1:CDS
AGGTCGAGGCATTCTAATGA+AGG 0.512079 6:-10570101 MsaT030595.1:CDS
CATGTTGAGTTTATCTGTTG+TGG 0.516373 6:-10570660 MsaT030595.1:CDS
CAGTTTGATCGCAGAGAACT+GGG 0.518838 6:-10570230 MsaT030595.1:CDS
ATTCAGTTCAGTTGCTGGGT+AGG 0.520137 6:-10570031 MsaT030595.1:CDS
CAACATCGTGAACATTCTCT+TGG 0.521413 6:+10571298 None:intergenic
GAGTTGAACCAATCGGGTAA+GGG 0.525760 6:+10571094 None:intergenic
TGCCATTTGATTAAGGAGGA+AGG 0.526986 6:+10571071 None:intergenic
GGAATGAATATGATGTGTAT+TGG 0.543953 6:-10570707 MsaT030595.1:CDS
TTGTTGTTGTTGAGAAACTT+CGG 0.545787 6:+10571275 None:intergenic
AAGAATTCAGTTCAGTTGCT+GGG 0.547293 6:-10570035 MsaT030595.1:CDS
AGTTGAACCAATCGGGTAAG+GGG 0.553048 6:+10571095 None:intergenic
GCCATTTGATTAAGGAGGAA+GGG 0.555349 6:+10571072 None:intergenic
AGGGAAGACCGAGTTTCTCC+CGG 0.570730 6:-10570081 MsaT030595.1:CDS
GAATGTTAAGATAGTAATGA+GGG 0.573320 6:-10571418 MsaT030595.1:CDS
GGACAATTCCGGGAGAAACT+CGG 0.573970 6:+10570073 None:intergenic
TTTACAAAGAACCTGAGATA+GGG 0.575433 6:-10569941 MsaT030595.1:CDS
TCTCTGCGATCAAACTGTCT+AGG 0.580104 6:+10570236 None:intergenic
AAGTAAGAGGTTCATCACAT+AGG 0.581914 6:+10571466 None:intergenic
CGAATGTTAAGATAGTAATG+AGG 0.584856 6:-10571419 MsaT030595.1:CDS
AAATAACAATCAACAACTGG+AGG 0.586371 6:+10570737 None:intergenic
GTGTGTTGAGAAAGATGCGC+TGG 0.599568 6:-10570009 MsaT030595.1:CDS
TCTCAGAATGACAACAACAT+AGG 0.601321 6:-10569882 MsaT030595.1:CDS
AGTGATTCAGCTCATTTAGT+CGG 0.603818 6:-10571210 MsaT030595.1:CDS
GAAGATGAAGTTCAAGCAGA+AGG 0.608435 6:-10571387 MsaT030595.1:CDS
TCGCTGCAGTGAAAAGGTCG+AGG 0.608854 6:-10570115 MsaT030595.1:CDS
ATGTTGTTGTCATTCTGAGA+CGG 0.612073 6:+10569885 None:intergenic
CATCGAACAATACCGAAACC+TGG 0.616991 6:-10570271 MsaT030595.1:CDS
GGTCGAGGCATTCTAATGAA+GGG 0.626484 6:-10570100 MsaT030595.1:CDS
TCTAGGACAAGCAACAAACC+AGG 0.628340 6:+10570253 None:intergenic
AATAACAATCAACAACTGGA+GGG 0.671975 6:+10570738 None:intergenic
AATCTGCCATTTGATTAAGG+AGG 0.686726 6:+10571067 None:intergenic
GAATCAGTGAGAATTGGTGT+CGG 0.690057 6:+10571243 None:intergenic
GGATCTCATATCTTACACAA+AGG 0.712629 6:-10570501 MsaT030595.1:CDS
GGGTTGTGAATGTAGAAGCG+AGG 0.752498 6:+10571133 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr6 gene 10569833 10571526 10569833 ID=MsaG030595
Chr6 mRNA 10569833 10571526 10569833 ID=MsaT030595.1;Parent=MsaG030595
Chr6 exon 10569833 10570763 10569833 ID=MsaT030595.1.exon2;Parent=MsaT030595.1
Chr6 CDS 10569833 10570763 10569833 ID=cds.MsaT030595.1;Parent=MsaT030595.1
Chr6 exon 10571024 10571526 10571024 ID=MsaT030595.1.exon1;Parent=MsaT030595.1
Chr6 CDS 10571024 10571526 10571024 ID=cds.MsaT030595.1;Parent=MsaT030595.1
Gene Sequence

>MsaT030595.1

ATGGAAGTTGAAGAAAAGATGGAAATGGGTTTATGCTTCCTATGTGATGAACCTCTTACTTTAGATCATTTTCAGTTAAAGCATACGAATGTTAAGATAGTAATGAGGGATATTGATGAAGATGAAGTTCAAGCAGAAGGTGAAGATCTCCAGCAACAGTGTGCCTTTTCAGCGAACAACACAGAAATCCCACTACCAGAGAATCACCAAGAGAATGTTCACGATGTTGCCGAAGTTTCTCAACAACAACAATCTTCTGTTCCGACACCAATTCTCACTGATTCGTTAATGTCGAGTGATTCAGCTCATTTAGTCGGCGACGATAGCATGGAAAAATTGAAGGTTGAAGGAATTTTACCCATAAATCTTCACCTCGCTTCTACATTCACAACCCAAGTTTCAACTAAAACCCCTTACCCGATTGGTTCAACTCCCTTCCTCCTTAATCAAATGGCAGATTTGCGTGATGAGTTGCAGAGCAATTCTCAATCGTTGGGTGATAAGTGCCCTCCAGTTGTTGATTGTTATTTATCAAATGGAATGAATATGATGTGTATTGGTTCTTGTAACTACACCTTATTCAACATGTTGAGTTTATCTGTTGTGGAGTTTTGGTATTTTGGAAGACACACTCATTTTGTGGGTGATGAAACTTTGCAGTTTAAGGTTTTTGAATCTTCACTTTTGTTTTTTGAAAATTCAAAGGAAATTCATGTGCTCAAACACAAATCAATTCACTATAGGGATCTCATATCTTACACAAAGGTATTTCAAGATTTGATTACATCGAAAAAATGGCCGAAGATTATCAGGAAGATAAATGAGATAAACGTTCTCGGGTCTCGTTCATCTTTTTCGTCTTCTGCCAAGAAGAAGTTTAGTCTTGTTGCTACTGTTCATGTTGCTTTCTATGTTGTTTTTTCTTTGTTGGGGTATTATTCTTTTTTGAAATGGAAGGGGATGAGAAAAGTGTCATCGAACAATACCGAAACCTGGTTTGTTGCTTGTCCTAGACAGTTTGATCGCAGAGAACTGGGATCTACAACAAGAGAGTTTCATCCTAGAAGAATTGTTGGTTACGGTTCATTTTGTACTGTGTATAAAGCTTTCTCTATATTTTTTAGAACCATCGCTGCAGTGAAAAGGTCGAGGCATTCTAATGAAGGGAAGACCGAGTTTCTCCCGGAATTGTCCATTGATTTAAGGCACAAGAATTCAGTTCAGTTGCTGGGTAGGTGTGTTGAGAAAGATGCGCTGGTTCTTGTTTATGATTTCAGGCCTAATAGCAGCTTTGAAAAGATGATTTACAAAGAACCTGAGATAGGGAAATTGTTGAGTTGGTCTCAGAATCCATTTTTACCGTCTCAGAATGACAACAACATAGGATTTGATTTCAGGAATATCAATGAGAATCCATTGAGTTTCCATTTGTAA

Protein sequence

>MsaT030595.1

MEVEEKMEMGLCFLCDEPLTLDHFQLKHTNVKIVMRDIDEDEVQAEGEDLQQQCAFSANNTEIPLPENHQENVHDVAEVSQQQQSSVPTPILTDSLMSSDSAHLVGDDSMEKLKVEGILPINLHLASTFTTQVSTKTPYPIGSTPFLLNQMADLRDELQSNSQSLGDKCPPVVDCYLSNGMNMMCIGSCNYTLFNMLSLSVVEFWYFGRHTHFVGDETLQFKVFESSLLFFENSKEIHVLKHKSIHYRDLISYTKVFQDLITSKKWPKIIRKINEINVLGSRSSFSSSAKKKFSLVATVHVAFYVVFSLLGYYSFLKWKGMRKVSSNNTETWFVACPRQFDRRELGSTTREFHPRRIVGYGSFCTVYKAFSIFFRTIAAVKRSRHSNEGKTEFLPELSIDLRHKNSVQLLGRCVEKDALVLVYDFRPNSSFEKMIYKEPEIGKLLSWSQNPFLPSQNDNNIGFDFRNINENPLSFHL*