AlfalfaGEDB | MsaG030766

M. sativa ssp. caerulea / MsaG030766

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030766	tr\|A0A396HGW4\|A0A396HGW4_MEDTR	57.407	54	23	0	90	143	224	277	4.90e-14	79.0
MsaG030766	tr\|A0A396HGW4\|A0A396HGW4_MEDTR	88.811	143	16	0	1	143	1	143	4.17e-83	268

TFs/TRs:

Gene ID	Type	Classification
MsaG030766	TF	FAR1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000113	MsaG030766	0.809117	3.782437e-50	6.323208e-48
MsaG001323	MsaG030766	0.810985	1.504284e-50	2.631313e-48
MsaG003311	MsaG030766	0.800412	2.439914e-48	3.329787e-46
MsaG003684	MsaG030766	0.806876	1.128143e-49	1.787320e-47
MsaG003859	MsaG030766	0.827165	3.244828e-54	8.667841e-52
MsaG003972	MsaG030766	0.803231	6.475218e-49	9.422734e-47
MsaG004432	MsaG030766	0.804120	4.243239e-49	6.303104e-47
MsaG004746	MsaG030766	0.806174	1.583802e-49	2.468050e-47
MsaG005004	MsaG030766	0.822622	3.783449e-53	8.922163e-51
MsaG005321	MsaG030766	0.809627	2.943406e-50	4.981403e-48
MsaG006013	MsaG030766	0.811224	1.335687e-50	2.350186e-48
MsaG006327	MsaG030766	0.800804	2.030893e-48	2.796247e-46
MsaG006633	MsaG030766	0.802956	7.375838e-49	1.066513e-46
MsaG006668	MsaG030766	0.801136	1.738889e-48	2.412132e-46
MsaG007117	MsaG030766	0.806839	1.148394e-49	1.817801e-47
MsaG007990	MsaG030766	0.801327	1.589880e-48	2.215011e-46
MsaG007988	MsaG030766	0.809262	3.521353e-50	5.907078e-48
MsaG008288	MsaG030766	0.809313	3.434006e-50	5.767557e-48
MsaG008299	MsaG030766	0.817062	6.964703e-52	1.419046e-49
MsaG010628	MsaG030766	0.804254	3.980187e-49	5.930792e-47
MsaG011881	MsaG030766	0.809269	3.509214e-50	5.887733e-48
MsaG012411	MsaG030766	0.833996	7.029129e-56	2.284753e-53
MsaG013228	MsaG030766	0.811338	1.262280e-50	2.227221e-48
MsaG013578	MsaG030766	0.800864	1.974714e-48	2.722526e-46
MsaG013846	MsaG030766	0.842364	5.032523e-58	2.117383e-55
MsaG016002	MsaG030766	0.814730	2.295415e-51	4.406984e-49
MsaG016796	MsaG030766	0.812648	6.560558e-51	1.195565e-48
MsaG017087	MsaG030766	0.818703	2.979363e-52	6.332818e-50
MsaG017192	MsaG030766	0.800623	2.210820e-48	3.031590e-46
MsaG017985	MsaG030766	0.810614	1.808016e-50	3.134121e-48
MsaG019134	MsaG030766	0.800807	2.027951e-48	2.792394e-46
MsaG019335	MsaG030766	0.808838	4.336340e-50	7.200754e-48
MsaG019540	MsaG030766	0.832535	1.618145e-55	5.039177e-53
MsaG019589	MsaG030766	0.800147	2.760772e-48	3.745045e-46
MsaG020648	MsaG030766	0.816049	1.171698e-51	2.326000e-49
MsaG020712	MsaG030766	0.809892	2.582447e-50	4.398667e-48
MsaG021510	MsaG030766	0.839851	2.284734e-57	8.877826e-55
MsaG021565	MsaG030766	0.807547	8.143015e-50	1.310827e-47
MsaG021836	MsaG030766	0.812958	5.614128e-51	1.031047e-48
MsaG022095	MsaG030766	0.800014	2.936234e-48	3.971395e-46
MsaG022320	MsaG030766	0.806479	1.366819e-49	2.145437e-47
MsaG022936	MsaG030766	0.800129	2.783058e-48	3.773804e-46
MsaG023350	MsaG030766	0.808239	5.812009e-50	9.512961e-48
MsaG023967	MsaG030766	0.816105	1.138459e-51	2.263237e-49
MsaG026867	MsaG030766	0.803703	5.174330e-49	7.612311e-47
MsaG028254	MsaG030766	0.826830	3.897442e-54	1.031434e-51
MsaG028590	MsaG030766	0.804898	2.924516e-49	4.423331e-47
MsaG028760	MsaG030766	0.811134	1.396881e-50	2.452370e-48
MsaG028831	MsaG030766	0.804634	3.318393e-49	4.988279e-47
MsaG028883	MsaG030766	0.800910	1.933222e-48	2.668014e-46
MsaG029083	MsaG030766	0.804948	2.856433e-49	4.325247e-47
MsaG029193	MsaG030766	0.809566	3.032182e-50	5.124350e-48
MsaG029311	MsaG030766	0.810764	1.678384e-50	2.920074e-48
MsaG029370	MsaG030766	0.801551	1.430807e-48	2.003547e-46
MsaG029652	MsaG030766	0.825594	7.647649e-54	1.955459e-51
MsaG029835	MsaG030766	0.809218	3.599504e-50	6.031721e-48
MsaG029894	MsaG030766	0.814746	2.276121e-51	4.371867e-49
MsaG030766	MsaG031410	0.808126	6.143843e-50	1.002853e-47
MsaG030766	MsaG032765	0.816540	9.108616e-52	1.831005e-49
MsaG030766	MsaG033569	0.804706	3.207317e-49	4.829285e-47
MsaG030766	MsaG035457	0.804532	3.484154e-49	5.225224e-47
MsaG030766	MsaG041930	0.812787	6.118807e-51	1.118943e-48
MsaG030766	MsaG043710	0.805081	2.679871e-49	4.070480e-47
MsaG030766	MsaG044369	0.837375	9.890626e-57	3.558656e-54
MsaG030766	MsaG045037	0.812185	8.271507e-51	1.490144e-48
MsaG030766	MsaG045517	0.808212	5.890511e-50	9.635037e-48
MsaG030766	MsaG045618	0.829024	1.162562e-54	3.271959e-52
MsaG030766	MsaG046057	0.801575	1.414716e-48	1.982086e-46
MsaG030766	MsaG046459	0.824005	1.805013e-53	4.419076e-51
MsaG030766	MsaG047185	0.809529	3.088776e-50	5.215260e-48
MsaG030766	MsaG002462	0.835118	3.682603e-56	1.237895e-53
MsaG030766	MsaG002669	0.819135	2.379166e-52	5.114861e-50
MsaG030766	MsaG008743	0.803140	6.759945e-49	9.816301e-47
MsaG030766	MsaG013545	0.819225	2.269938e-52	4.891534e-50
MsaG030766	MsaG013938	0.808267	5.734540e-50	9.392417e-48
MsaG030766	MsaG012992	0.825531	7.912671e-54	2.019835e-51
MsaG030766	MsaG018951	0.811540	1.141023e-50	2.023286e-48
MsaG030766	MsaG032827	0.808509	5.094399e-50	8.392577e-48
MsaG030766	MsaG030125	0.802712	8.278993e-49	1.190389e-46
MsaG030766	MsaG037402	0.813172	5.044066e-51	9.313076e-49
MsaG030766	MsaG037397	0.808946	4.112919e-50	6.847465e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030766	MtrunA17_Chr6g0458391	88.811	143	16	0	1	143	1	143	8.03e-87	268
MsaG030766	MtrunA17_Chr6g0458391	57.407	54	23	0	90	143	224	277	9.43e-18	79.0
MsaG030766	MtrunA17_Chr1g0203721	56.863	51	22	0	93	143	65	115	1.47e-15	72.8
MsaG030766	MtrunA17_Chr3g0082121	50.725	69	32	1	78	144	28	96	2.34e-13	66.2
MsaG030766	MtrunA17_Chr5g0401121	36.145	83	50	1	65	144	27	109	3.76e-12	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 37 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCGAATTCCATGCCAATATT+TGG	0.165608	6:-13535506	None:intergenic
AATACGAAATTGGTCTTCAT+TGG	0.304948	6:-13535387	None:intergenic
GTCTATGGCAGGTGAATCTT+CGG	0.322499	6:-13535637	None:intergenic
ATATATGTGGCGCCAAATAT+TGG	0.340354	6:+13535494	MsaT030766.1:CDS
ATCAACAAAAGTAGGATAGA+TGG	0.360653	6:+13535602	MsaT030766.1:CDS
TGCTAGCGTCAATACGAAAT+TGG	0.360891	6:-13535397	None:intergenic
GTCTTCATTGGAAGTATTTG+AGG	0.393019	6:-13535375	None:intergenic
TAGGACGAAAACCTTGTCTA+TGG	0.403464	6:-13535652	None:intergenic
CACTTTACTGTCTGCAGCAC+AGG	0.414311	6:-13535267	None:intergenic
GAAAGGTTTCAGCATAAGAA+AGG	0.423022	6:+13535574	MsaT030766.1:CDS
GTGACACGAAACTTGCCATT+TGG	0.430039	6:-13535755	None:intergenic
TCTGCAGCACAGGAATCCTT+CGG	0.440191	6:-13535257	None:intergenic
TCCATCTGAGTAAGGCCAAC+AGG	0.444164	6:-13535332	None:intergenic
CTGCAGCACAGGAATCCTTC+GGG	0.455610	6:-13535256	None:intergenic
TCTATGGCAGGTGAATCTTC+GGG	0.473803	6:-13535636	None:intergenic
AGGATTTCATCAACAAAAGT+AGG	0.483308	6:+13535594	MsaT030766.1:CDS
ACTATTTCTCGTCAGCCAAA+TGG	0.488160	6:+13535740	MsaT030766.1:intron
AACAAGTATGCTATTATGAA+AGG	0.494730	6:+13535557	MsaT030766.1:CDS
CTCTGCTATAGAGGTAGCAT+CGG	0.505769	6:-13535441	None:intergenic
TCCTGTTGGCCTTACTCAGA+TGG	0.506262	6:+13535331	MsaT030766.1:CDS
CAATGATTTCCATCTGAGTA+AGG	0.506463	6:-13535340	None:intergenic
TATTGGCATGGAATTCGAAT+CGG	0.511843	6:+13535511	MsaT030766.1:CDS
AGTAACGGTCTCTGCTATAG+AGG	0.516564	6:-13535450	None:intergenic
ACGAAAACCTTGTCTATGGC+AGG	0.521032	6:-13535648	None:intergenic
TCTGCTATAGAGGTAGCATC+GGG	0.521378	6:-13535440	None:intergenic
CTCATTTGTTACATCAGTAA+CGG	0.549751	6:-13535465	None:intergenic
AGTAGTGATTGATATGGGGC+AGG	0.561170	6:+13535223	None:intergenic
AGTGCAAATGCTCATCCTGT+TGG	0.564210	6:+13535317	MsaT030766.1:CDS
TGTTGTAACACTTGTAAGCA+TGG	0.566414	6:-13535538	None:intergenic
AAATGAGGAGGAAATATATG+TGG	0.601435	6:+13535481	MsaT030766.1:CDS
TACTGATGTAACAAATGAGG+AGG	0.606710	6:+13535469	MsaT030766.1:CDS
CGTTACTGATGTAACAAATG+AGG	0.607025	6:+13535466	MsaT030766.1:CDS
AGATTCACCTGCCATAGACA+AGG	0.613560	6:+13535641	MsaT030766.1:CDS
TTTCGTATTGACGCTAGCAG+AGG	0.623277	6:+13535401	MsaT030766.1:CDS
TGTGGCGCCAAATATTGGCA+TGG	0.636247	6:+13535499	MsaT030766.1:CDS
GCAGGAGAATCAATGCCCGA+AGG	0.685839	6:+13535241	MsaT030766.1:CDS
CTGCTATAGAGGTAGCATCG+GGG	0.739070	6:-13535439	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	13535236	13535780	13535236	ID=MsaG030766
Chr6	mRNA	13535236	13535780	13535236	ID=MsaT030766.1;Parent=MsaG030766
Chr6	exon	13535236	13535662	13535236	ID=MsaT030766.1.exon1;Parent=MsaT030766.1
Chr6	CDS	13535236	13535662	13535236	ID=cds.MsaT030766.1;Parent=MsaT030766.1
Chr6	exon	13535755	13535780	13535755	ID=MsaT030766.1.exon2;Parent=MsaT030766.1
Chr6	CDS	13535755	13535780	13535755	ID=cds.MsaT030766.1;Parent=MsaT030766.1

Gene Sequence

>MsaT030766.1

ATGGGGCAGGAGAATCAATGCCCGAAGGATTCCTGTGCTGCAGACAGTAAAGTGAACGTTAGCAATGAGACTGATTGTACAAGTGCAAATGCTCATCCTGTTGGCCTTACTCAGATGGAAATCATTGATGAATGTCAGACCTCAAATACTTCCAATGAAGACCAATTTCGTATTGACGCTAGCAGAGGACCGATGTGTCAAAACCCCGATGCTACCTCTATAGCAGAGACCGTTACTGATGTAACAAATGAGGAGGAAATATATGTGGCGCCAAATATTGGCATGGAATTCGAATCGGAAGACCATGCTTACAAGTGTTACAACAAGTATGCTATTATGAAAGGTTTCAGCATAAGAAAGGATTTCATCAACAAAAGTAGGATAGATGGTTCAGTGATGTCCCGAAGATTCACCTGCCATAGACAAGCCAAATGGCAAGTTTCGTGTCACTAG

Protein sequence

>MsaT030766.1

MGQENQCPKDSCAADSKVNVSNETDCTSANAHPVGLTQMEIIDECQTSNTSNEDQFRIDASRGPMCQNPDATSIAETVTDVTNEEEIYVAPNIGMEFESEDHAYKCYNKYAIMKGFSIRKDFINKSRIDGSVMSRRFTCHRQAKWQVSCH*