Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG030811 | sp|Q9FIM0|AGL82_ARATH | 36.301 | 146 | 90 | 2 | 6 | 150 | 6 | 149 | 2.06e-19 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG030811 | tr|A0A396HCY5|A0A396HCY5_MEDTR | 93.642 | 346 | 22 | 0 | 1 | 346 | 11 | 356 | 0.0 | 684 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG030811 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG030811 | MtrunA17_Chr6g0457851 | 93.642 | 346 | 22 | 0 | 1 | 346 | 11 | 356 | 0.0 | 684 |
| MsaG030811 | MtrunA17_Chr1g0212151 | 74.438 | 356 | 72 | 3 | 1 | 346 | 1 | 347 | 0.0 | 525 |
| MsaG030811 | MtrunA17_Chr6g0449861 | 66.382 | 351 | 109 | 5 | 1 | 346 | 9 | 355 | 2.97e-159 | 449 |
| MsaG030811 | MtrunA17_Chr6g0449851 | 61.272 | 346 | 103 | 3 | 1 | 346 | 1 | 315 | 5.47e-148 | 419 |
| MsaG030811 | MtrunA17_Chr4g0059631 | 41.935 | 155 | 87 | 1 | 1 | 155 | 1 | 152 | 5.50e-38 | 136 |
| MsaG030811 | MtrunA17_Chr1g0212471 | 35.366 | 164 | 105 | 1 | 1 | 164 | 1 | 163 | 3.87e-35 | 127 |
| MsaG030811 | MtrunA17_Chr4g0022641 | 35.233 | 193 | 111 | 2 | 1 | 193 | 1 | 179 | 2.78e-34 | 130 |
| MsaG030811 | MtrunA17_Chr2g0303981 | 37.662 | 154 | 91 | 2 | 3 | 155 | 5 | 154 | 5.64e-31 | 115 |
| MsaG030811 | MtrunA17_Chr3g0107381 | 27.044 | 159 | 102 | 5 | 1 | 151 | 1 | 153 | 4.34e-16 | 76.3 |
| MsaG030811 | MtrunA17_Chr3g0134451 | 29.936 | 157 | 94 | 4 | 1 | 157 | 1 | 141 | 9.79e-16 | 77.0 |
| MsaG030811 | MtrunA17_Chr5g0432691 | 29.518 | 166 | 101 | 6 | 1 | 157 | 1 | 159 | 8.40e-15 | 71.2 |
| MsaG030811 | MtrunA17_Chr3g0107341 | 32.099 | 162 | 92 | 7 | 3 | 154 | 2 | 155 | 1.39e-14 | 70.9 |
| MsaG030811 | MtrunA17_Chr3g0107351 | 30.435 | 161 | 96 | 6 | 3 | 154 | 2 | 155 | 2.23e-14 | 70.1 |
| MsaG030811 | MtrunA17_Chr4g0014321 | 37.607 | 117 | 58 | 5 | 1 | 116 | 1 | 103 | 2.65e-14 | 71.6 |
| MsaG030811 | MtrunA17_Chr3g0110131 | 32.099 | 162 | 96 | 5 | 1 | 154 | 1 | 156 | 3.24e-14 | 71.6 |
| MsaG030811 | MtrunA17_Chr8g0379021 | 31.973 | 147 | 80 | 4 | 2 | 136 | 12 | 150 | 9.05e-14 | 68.9 |
| MsaG030811 | MtrunA17_Chr3g0107361 | 30.000 | 160 | 98 | 6 | 3 | 154 | 2 | 155 | 1.26e-13 | 68.2 |
| MsaG030811 | MtrunA17_Chr3g0107331 | 33.636 | 110 | 66 | 3 | 3 | 111 | 2 | 105 | 8.28e-13 | 65.9 |
| MsaG030811 | MtrunA17_Chr5g0404951 | 29.375 | 160 | 96 | 5 | 1 | 155 | 1 | 148 | 1.71e-12 | 66.2 |
| MsaG030811 | MtrunA17_Chr8g0376821 | 38.272 | 81 | 38 | 2 | 1 | 69 | 1 | 81 | 3.67e-12 | 64.3 |
| MsaG030811 | MtrunA17_Chr5g0425191 | 47.059 | 51 | 27 | 0 | 1 | 51 | 1 | 51 | 4.06e-12 | 62.0 |
| MsaG030811 | MtrunA17_Chr8g0380021 | 28.369 | 141 | 92 | 3 | 1 | 141 | 17 | 148 | 6.35e-12 | 64.7 |
| MsaG030811 | MtrunA17_Chr2g0333981 | 27.143 | 140 | 98 | 1 | 1 | 136 | 11 | 150 | 6.72e-12 | 63.5 |
| MsaG030811 | MtrunA17_Chr2g0283941 | 32.407 | 108 | 65 | 4 | 2 | 108 | 3 | 103 | 6.83e-12 | 64.7 |
| MsaG030811 | MtrunA17_Chr1g0197321 | 25.455 | 165 | 103 | 5 | 1 | 154 | 1 | 156 | 7.21e-12 | 62.8 |
| MsaG030811 | MtrunA17_Chr2g0284911 | 27.329 | 161 | 98 | 4 | 1 | 158 | 16 | 160 | 7.62e-12 | 64.7 |
| MsaG030811 | MtrunA17_Chr7g0246381 | 43.103 | 58 | 33 | 0 | 1 | 58 | 1 | 58 | 7.63e-12 | 60.5 |
| MsaG030811 | MtrunA17_Chr5g0427921 | 46.552 | 58 | 31 | 0 | 1 | 58 | 1 | 58 | 7.78e-12 | 60.1 |
| MsaG030811 | MtrunA17_Chr1g0173161 | 53.061 | 49 | 23 | 0 | 1 | 49 | 1 | 49 | 8.14e-12 | 60.8 |
| MsaG030811 | MtrunA17_Chr3g0107461 | 25.610 | 164 | 107 | 6 | 1 | 155 | 1 | 158 | 8.95e-12 | 62.8 |
| MsaG030811 | MtrunA17_Chr4g0074101 | 41.667 | 60 | 35 | 0 | 1 | 60 | 1 | 60 | 9.81e-12 | 63.5 |
| MsaG030811 | MtrunA17_Chr8g0351051 | 26.667 | 150 | 101 | 3 | 1 | 150 | 1 | 141 | 1.07e-11 | 64.3 |
| MsaG030811 | MtrunA17_Chr1g0169761 | 41.667 | 60 | 35 | 0 | 1 | 60 | 1 | 60 | 1.40e-11 | 62.8 |
| MsaG030811 | MtrunA17_Chr1g0197261 | 26.087 | 161 | 106 | 5 | 1 | 154 | 1 | 155 | 1.96e-11 | 61.6 |
| MsaG030811 | MtrunA17_Chr1g0175611 | 43.333 | 60 | 34 | 0 | 1 | 60 | 1 | 60 | 2.32e-11 | 61.6 |
| MsaG030811 | MtrunA17_Chr8g0377561 | 48.980 | 49 | 25 | 0 | 1 | 49 | 1 | 49 | 2.38e-11 | 59.7 |
| MsaG030811 | MtrunA17_Chr1g0197461 | 26.316 | 152 | 93 | 6 | 3 | 144 | 2 | 144 | 2.65e-11 | 61.2 |
| MsaG030811 | MtrunA17_Chr1g0159661 | 27.027 | 148 | 88 | 5 | 1 | 144 | 1 | 132 | 2.97e-11 | 61.6 |
| MsaG030811 | MtrunA17_Chr2g0279821 | 53.061 | 49 | 23 | 0 | 1 | 49 | 1 | 49 | 3.26e-11 | 62.8 |
| MsaG030811 | MtrunA17_Chr5g0420351 | 28.125 | 128 | 79 | 4 | 1 | 128 | 1 | 115 | 3.29e-11 | 60.8 |
| MsaG030811 | MtrunA17_Chr6g0455511 | 28.966 | 145 | 92 | 4 | 1 | 144 | 1 | 135 | 3.98e-11 | 62.8 |
| MsaG030811 | MtrunA17_Chr2g0308251 | 46.939 | 49 | 26 | 0 | 1 | 49 | 1 | 49 | 4.04e-11 | 58.9 |
| MsaG030811 | MtrunA17_Chr4g0061691 | 28.571 | 182 | 98 | 6 | 1 | 168 | 1 | 164 | 4.20e-11 | 62.4 |
| MsaG030811 | MtrunA17_Chr4g0049541 | 37.349 | 83 | 44 | 1 | 1 | 83 | 1 | 75 | 4.36e-11 | 62.0 |
| MsaG030811 | MtrunA17_Chr8g0351041 | 46.552 | 58 | 31 | 0 | 1 | 58 | 1 | 58 | 5.34e-11 | 60.5 |
| MsaG030811 | MtrunA17_Chr7g0220111 | 48.000 | 50 | 26 | 0 | 1 | 50 | 1 | 50 | 6.93e-11 | 62.0 |
| MsaG030811 | MtrunA17_Chr3g0125241 | 37.662 | 77 | 42 | 1 | 1 | 77 | 26 | 96 | 7.16e-11 | 61.2 |
| MsaG030811 | MtrunA17_Chr7g0246431 | 50.000 | 50 | 25 | 0 | 1 | 50 | 1 | 50 | 9.17e-11 | 60.8 |
| MsaG030811 | MtrunA17_Chr8g0351751 | 33.628 | 113 | 62 | 5 | 1 | 113 | 1 | 100 | 9.34e-11 | 61.6 |
| MsaG030811 | MtrunA17_Chr4g0020221 | 51.020 | 49 | 24 | 0 | 1 | 49 | 1 | 49 | 9.43e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG030811 | AT5G55690.1 | 39.073 | 151 | 84 | 2 | 1 | 150 | 1 | 144 | 2.27e-25 | 103 |
| MsaG030811 | AT5G55690.2 | 39.073 | 151 | 84 | 2 | 1 | 150 | 1 | 144 | 2.27e-25 | 103 |
| MsaG030811 | AT5G58890.1 | 36.301 | 146 | 90 | 2 | 6 | 150 | 6 | 149 | 2.09e-20 | 90.5 |
| MsaG030811 | AT1G22590.2 | 31.677 | 161 | 99 | 3 | 1 | 156 | 1 | 155 | 4.47e-17 | 78.2 |
| MsaG030811 | AT3G18650.1 | 35.000 | 140 | 79 | 4 | 16 | 150 | 31 | 163 | 4.29e-15 | 76.3 |
| MsaG030811 | AT1G65300.1 | 29.747 | 158 | 97 | 7 | 5 | 154 | 4 | 155 | 1.49e-14 | 73.6 |
| MsaG030811 | AT1G65330.1 | 34.234 | 111 | 66 | 4 | 3 | 112 | 2 | 106 | 1.14e-13 | 70.9 |
| MsaG030811 | AT5G27960.1 | 33.028 | 109 | 66 | 3 | 5 | 112 | 3 | 105 | 1.68e-13 | 70.9 |
| MsaG030811 | AT5G26650.1 | 34.234 | 111 | 62 | 3 | 5 | 112 | 3 | 105 | 2.42e-13 | 70.9 |
| MsaG030811 | AT3G05860.2 | 38.961 | 77 | 41 | 3 | 1 | 77 | 1 | 71 | 7.47e-13 | 67.4 |
| MsaG030811 | AT3G05860.3 | 38.961 | 77 | 41 | 3 | 1 | 77 | 1 | 71 | 1.01e-12 | 67.8 |
| MsaG030811 | AT3G05860.1 | 38.961 | 77 | 41 | 3 | 1 | 77 | 1 | 71 | 1.29e-12 | 67.4 |
| MsaG030811 | AT4G11880.2 | 40.000 | 75 | 45 | 0 | 1 | 75 | 1 | 75 | 1.68e-12 | 65.5 |
| MsaG030811 | AT4G11880.3 | 40.000 | 75 | 45 | 0 | 1 | 75 | 1 | 75 | 1.68e-12 | 65.5 |
| MsaG030811 | AT5G23260.3 | 30.275 | 109 | 70 | 1 | 1 | 109 | 1 | 103 | 3.39e-12 | 65.9 |
| MsaG030811 | AT5G23260.2 | 30.275 | 109 | 70 | 1 | 1 | 109 | 1 | 103 | 3.81e-12 | 65.9 |
| MsaG030811 | AT5G26580.1 | 49.153 | 59 | 30 | 0 | 1 | 59 | 1 | 59 | 3.82e-12 | 67.0 |
| MsaG030811 | AT4G11880.4 | 40.000 | 75 | 45 | 0 | 1 | 75 | 1 | 75 | 5.71e-12 | 65.1 |
| MsaG030811 | AT4G11880.1 | 40.000 | 75 | 45 | 0 | 1 | 75 | 1 | 75 | 5.71e-12 | 65.1 |
| MsaG030811 | AT3G57230.2 | 50.980 | 51 | 25 | 0 | 1 | 51 | 1 | 51 | 5.72e-12 | 63.2 |
| MsaG030811 | AT5G23260.4 | 30.275 | 109 | 70 | 1 | 1 | 109 | 17 | 119 | 6.08e-12 | 65.5 |
| MsaG030811 | AT5G23260.1 | 30.275 | 109 | 70 | 1 | 1 | 109 | 17 | 119 | 6.23e-12 | 65.5 |
| MsaG030811 | AT5G62165.14 | 32.990 | 97 | 57 | 1 | 1 | 97 | 1 | 89 | 1.03e-11 | 61.6 |
| MsaG030811 | AT2G03060.3 | 28.972 | 107 | 69 | 2 | 1 | 106 | 1 | 101 | 1.15e-11 | 65.9 |
| MsaG030811 | AT2G03060.7 | 28.972 | 107 | 69 | 2 | 1 | 106 | 1 | 101 | 1.15e-11 | 65.9 |
| MsaG030811 | AT2G03060.1 | 28.972 | 107 | 69 | 2 | 1 | 106 | 1 | 101 | 1.15e-11 | 65.9 |
| MsaG030811 | AT5G62165.6 | 27.711 | 166 | 100 | 4 | 1 | 160 | 1 | 152 | 1.20e-11 | 62.8 |
| MsaG030811 | AT5G62165.9 | 27.711 | 166 | 100 | 4 | 1 | 160 | 1 | 152 | 1.20e-11 | 62.8 |
| MsaG030811 | AT5G62165.7 | 27.711 | 166 | 100 | 4 | 1 | 160 | 1 | 152 | 1.20e-11 | 62.8 |
| MsaG030811 | AT5G62165.8 | 27.711 | 166 | 100 | 4 | 1 | 160 | 1 | 152 | 1.20e-11 | 62.8 |
| MsaG030811 | AT5G62165.13 | 27.711 | 166 | 100 | 4 | 1 | 160 | 1 | 152 | 1.20e-11 | 62.8 |
| MsaG030811 | AT2G45650.1 | 30.464 | 151 | 93 | 5 | 1 | 150 | 1 | 140 | 1.21e-11 | 64.7 |
| MsaG030811 | AT2G03060.2 | 28.972 | 107 | 69 | 2 | 1 | 106 | 1 | 101 | 1.46e-11 | 65.5 |
| MsaG030811 | AT3G57230.1 | 52.000 | 50 | 24 | 0 | 1 | 50 | 1 | 50 | 1.55e-11 | 63.9 |
| MsaG030811 | AT3G57230.4 | 52.000 | 50 | 24 | 0 | 1 | 50 | 1 | 50 | 1.55e-11 | 63.9 |
| MsaG030811 | AT2G22630.1 | 46.552 | 58 | 31 | 0 | 1 | 58 | 1 | 58 | 1.81e-11 | 63.5 |
| MsaG030811 | AT2G22630.2 | 46.552 | 58 | 31 | 0 | 1 | 58 | 1 | 58 | 1.81e-11 | 63.5 |
| MsaG030811 | AT3G57390.3 | 40.244 | 82 | 41 | 1 | 1 | 82 | 1 | 74 | 1.91e-11 | 63.5 |
| MsaG030811 | AT1G18750.4 | 28.972 | 107 | 69 | 2 | 1 | 106 | 1 | 101 | 2.12e-11 | 65.1 |
| MsaG030811 | AT2G28700.1 | 25.882 | 170 | 106 | 7 | 1 | 164 | 1 | 156 | 2.35e-11 | 64.7 |
| MsaG030811 | AT1G18750.1 | 28.972 | 107 | 69 | 2 | 1 | 106 | 1 | 101 | 2.64e-11 | 64.7 |
| MsaG030811 | AT1G18750.3 | 28.972 | 107 | 69 | 2 | 1 | 106 | 1 | 101 | 2.76e-11 | 64.7 |
| MsaG030811 | AT3G57390.1 | 40.244 | 82 | 41 | 1 | 1 | 82 | 1 | 74 | 2.79e-11 | 63.5 |
| MsaG030811 | AT1G31640.1 | 25.625 | 160 | 104 | 5 | 3 | 154 | 2 | 154 | 3.08e-11 | 64.7 |
| MsaG030811 | AT2G34440.1 | 25.882 | 170 | 105 | 5 | 1 | 162 | 1 | 157 | 3.13e-11 | 62.0 |
| MsaG030811 | AT5G62165.17 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 3.17e-11 | 61.6 |
| MsaG030811 | AT5G62165.12 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 3.17e-11 | 61.6 |
| MsaG030811 | AT5G62165.11 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 3.17e-11 | 61.6 |
| MsaG030811 | AT2G45660.2 | 38.095 | 84 | 44 | 1 | 1 | 84 | 1 | 76 | 3.43e-11 | 61.2 |
| MsaG030811 | AT5G62165.10 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 3.51e-11 | 62.4 |
| MsaG030811 | AT5G62165.4 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 3.51e-11 | 62.4 |
| MsaG030811 | AT3G54340.1 | 25.333 | 150 | 100 | 2 | 1 | 150 | 1 | 138 | 4.24e-11 | 62.8 |
| MsaG030811 | AT1G77980.1 | 32.941 | 85 | 50 | 1 | 1 | 85 | 1 | 78 | 4.86e-11 | 63.5 |
| MsaG030811 | AT5G62165.3 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 5.47e-11 | 62.0 |
| MsaG030811 | AT5G62165.1 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 5.47e-11 | 62.0 |
| MsaG030811 | AT5G62165.2 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 5.47e-11 | 62.0 |
| MsaG030811 | AT5G13790.2 | 51.020 | 49 | 24 | 0 | 1 | 49 | 1 | 49 | 5.63e-11 | 62.8 |
| MsaG030811 | AT2G45660.1 | 38.095 | 84 | 44 | 1 | 1 | 84 | 1 | 76 | 5.79e-11 | 62.0 |
| MsaG030811 | AT4G09960.1 | 26.582 | 158 | 99 | 4 | 1 | 154 | 1 | 145 | 6.59e-11 | 62.0 |
| MsaG030811 | AT4G09960.6 | 26.582 | 158 | 99 | 4 | 1 | 154 | 2 | 146 | 6.73e-11 | 62.0 |
| MsaG030811 | AT4G09960.5 | 26.582 | 158 | 99 | 4 | 1 | 154 | 11 | 155 | 7.37e-11 | 62.0 |
| MsaG030811 | AT2G42830.1 | 25.767 | 163 | 105 | 5 | 1 | 159 | 16 | 166 | 9.70e-11 | 61.6 |
Find 68 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACATGGATTTCAACTTAA+TGG | 0.109578 | 6:+14290101 | MsaT030811.1:CDS |
| ATTAGTGATAAAACCCAATT+AGG | 0.166661 | 6:+14289759 | MsaT030811.1:CDS |
| GCAAGCAGATTGATGTTAAT+TGG | 0.174718 | 6:+14289895 | MsaT030811.1:CDS |
| GAAGTTGCCAAAACCCTAAT+TGG | 0.210342 | 6:-14289773 | None:intergenic |
| GTGGTAGGTTTGAAAGATTC+TGG | 0.248071 | 6:-14290082 | None:intergenic |
| ATAAAACCCAATTAGGGTTT+TGG | 0.254018 | 6:+14289766 | MsaT030811.1:CDS |
| TTGTCTTTAGGCCATGTTTC+CGG | 0.275357 | 6:-14289321 | None:intergenic |
| GCATTTCCATTGTAATAGTA+TGG | 0.277693 | 6:-14290014 | None:intergenic |
| CAAAGGATGCATATGCTAAA+AGG | 0.297288 | 6:+14289588 | MsaT030811.1:CDS |
| CTTGGCTTTGAGATCAAGTT+AGG | 0.318975 | 6:-14289672 | None:intergenic |
| TTGATGTTAATTGGGCCAAC+TGG | 0.339871 | 6:+14289904 | MsaT030811.1:CDS |
| TTAGTGATAAAACCCAATTA+GGG | 0.373592 | 6:+14289760 | MsaT030811.1:CDS |
| TCTTGAACATCATAGATCTT+AGG | 0.373714 | 6:-14289399 | None:intergenic |
| AATCCCGGGGCTTCAAAGTT+AGG | 0.381492 | 6:-14289291 | None:intergenic |
| CAAGCAGATTGATGTTAATT+GGG | 0.383614 | 6:+14289896 | MsaT030811.1:CDS |
| TATGCTAAAAGGAGATCTTA+AGG | 0.391876 | 6:+14289599 | MsaT030811.1:CDS |
| GATGAATCTTACAATTCTCT+TGG | 0.397658 | 6:+14289507 | MsaT030811.1:CDS |
| GGGCCGTGGAAGAATATCTA+TGG | 0.413157 | 6:+14289146 | MsaT030811.1:CDS |
| AACATCAACATCACAAAGAA+TGG | 0.436469 | 6:-14289250 | None:intergenic |
| TTCTCCTAACTTTGAAGCCC+CGG | 0.437012 | 6:+14289287 | MsaT030811.1:CDS |
| GGAAGAGAATGCATAGCAAC+AGG | 0.437355 | 6:-14290056 | None:intergenic |
| CACAAGGTTGATAAATTTGT+AGG | 0.443122 | 6:+14289645 | MsaT030811.1:CDS |
| AAGTTGCCAAAACCCTAATT+GGG | 0.443811 | 6:-14289772 | None:intergenic |
| AGCCCCGGGATTTGCTGAAC+CGG | 0.446619 | 6:+14289302 | MsaT030811.1:CDS |
| ACATTTCAAAAGAGAAAGAA+TGG | 0.448242 | 6:+14289201 | MsaT030811.1:CDS |
| AAAGATGATGTATCCGTCTT+GGG | 0.455496 | 6:+14289485 | MsaT030811.1:CDS |
| TATCTTCTCTTTGCGCACTT+TGG | 0.461986 | 6:-14289463 | None:intergenic |
| CTCTTGGATCGGAACAATTG+AGG | 0.476521 | 6:+14289523 | MsaT030811.1:CDS |
| TAAAGATGATGTATCCGTCT+TGG | 0.481458 | 6:+14289484 | MsaT030811.1:CDS |
| TTTCCGGTTCAGCAAATCCC+GGG | 0.482987 | 6:-14289305 | None:intergenic |
| ATGAGATTGAAGTAGCTACT+TGG | 0.483532 | 6:-14289690 | None:intergenic |
| ATCTGAAAATCGATATGAAA+AGG | 0.483817 | 6:+14289958 | MsaT030811.1:CDS |
| TTATCACTAATATTCATCAA+TGG | 0.491553 | 6:-14289747 | None:intergenic |
| ATGCTAAAAGGAGATCTTAA+GGG | 0.496607 | 6:+14289600 | MsaT030811.1:CDS |
| TCTCCTAACTTTGAAGCCCC+GGG | 0.498039 | 6:+14289288 | MsaT030811.1:CDS |
| TTATCGCCATACTATTACAA+TGG | 0.516343 | 6:+14290008 | MsaT030811.1:CDS |
| ATCTTACAATTCTCTTGGAT+CGG | 0.517322 | 6:+14289512 | MsaT030811.1:CDS |
| GTTTCCGGTTCAGCAAATCC+CGG | 0.517428 | 6:-14289306 | None:intergenic |
| ATGGTATGAGCTTTGTGCAT+TGG | 0.522905 | 6:-14289832 | None:intergenic |
| AGCTCATAAGTTCAACTACA+TGG | 0.526542 | 6:+14290148 | MsaT030811.1:CDS |
| TGATGTTAATTGGGCCAACT+GGG | 0.531768 | 6:+14289905 | MsaT030811.1:CDS |
| TTAACATCAATCTGCTTGCA+AGG | 0.536240 | 6:-14289891 | None:intergenic |
| CATAAGTTCAACTACATGGA+TGG | 0.541076 | 6:+14290152 | MsaT030811.1:CDS |
| AACTTGATGCTTGTAATCAA+AGG | 0.542066 | 6:+14289571 | MsaT030811.1:CDS |
| TAAGTTGAAATCCATGTGGT+AGG | 0.546009 | 6:-14290097 | None:intergenic |
| ATCAACTCGATTGGCCCAGT+TGG | 0.551437 | 6:-14289919 | None:intergenic |
| AACATTAGCATCAACTCGAT+TGG | 0.551696 | 6:-14289928 | None:intergenic |
| GCATTGGAAATCATAGAAGA+AGG | 0.559558 | 6:-14289816 | None:intergenic |
| GAGGTCATTTGCTAGCATGT+TGG | 0.565239 | 6:+14289542 | MsaT030811.1:CDS |
| GATTTGCTGAACCGGAAACA+TGG | 0.565854 | 6:+14289310 | MsaT030811.1:CDS |
| ACTATAACACAACAAGTGAC+AGG | 0.568787 | 6:+14289373 | MsaT030811.1:CDS |
| GAAAATCGATATGAAAAGGA+AGG | 0.579144 | 6:+14289962 | MsaT030811.1:CDS |
| AGTTCAACTACATGGATGGA+AGG | 0.584745 | 6:+14290156 | MsaT030811.1:CDS |
| TACCATGTGGAGTCTCAAGA+AGG | 0.590843 | 6:+14289849 | MsaT030811.1:CDS |
| ATGTGGAGTCTCAAGAAGGC+AGG | 0.593991 | 6:+14289853 | MsaT030811.1:CDS |
| TCACTAATATTCATCAATGG+AGG | 0.597003 | 6:-14289744 | None:intergenic |
| TCCCCATAGAAAATGGGCCG+TGG | 0.598979 | 6:+14289132 | None:intergenic |
| GCTTGCAAGGATAAGACTGT+AGG | 0.613894 | 6:-14289878 | None:intergenic |
| AGGTTTGAAAGATTCTGGAA+AGG | 0.625479 | 6:-14290077 | None:intergenic |
| TGCCTTCTTGAGACTCCACA+TGG | 0.638414 | 6:-14289851 | None:intergenic |
| AATCTTTCAAACCTACCACA+TGG | 0.651037 | 6:+14290086 | MsaT030811.1:CDS |
| TTGTAAGATTCATCCCAAGA+CGG | 0.662155 | 6:-14289498 | None:intergenic |
| TTCCGGTTCAGCAAATCCCG+GGG | 0.665746 | 6:-14289304 | None:intergenic |
| TGCACAAAGCTCATACCATG+TGG | 0.684102 | 6:+14289836 | MsaT030811.1:CDS |
| GCTCCATAGATATTCTTCCA+CGG | 0.693432 | 6:-14289149 | None:intergenic |
| AATAGCTCATGAATCACACA+AGG | 0.705760 | 6:+14289629 | MsaT030811.1:CDS |
| ATGGCCTAAAGACAAAAGAG+AGG | 0.713382 | 6:+14289329 | MsaT030811.1:CDS |
| CCATTAAGTTGAAATCCATG+TGG | 0.755933 | 6:-14290101 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 14289144 | 14290184 | 14289144 | ID=MsaG030811 |
| Chr6 | mRNA | 14289144 | 14290184 | 14289144 | ID=MsaT030811.1;Parent=MsaG030811 |
| Chr6 | exon | 14289144 | 14290184 | 14289144 | ID=MsaT030811.1.exon1;Parent=MsaT030811.1 |
| Chr6 | CDS | 14289144 | 14290184 | 14289144 | ID=cds.MsaT030811.1;Parent=MsaT030811.1 |
| Gene Sequence |
| Protein sequence |
