AlfalfaGEDB | MsaG030906

M. sativa ssp. caerulea / MsaG030906

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030906	sp\|Q9SZL8\|FRS5_ARATH	24.413	213	137	2	209	398	426	637	5.81e-17	88.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030906	tr\|A0A445BW27\|A0A445BW27_ARAHY	38.971	544	278	10	26	527	32	563	3.66e-113	359

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TFs/TRs:

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Gene ID	Type	Classification
MsaG030906	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG030906	0.814378	2.743622e-51	5.221356e-49
MsaG000032	MsaG030906	0.874103	1.810599e-67	2.503423e-64
MsaG000048	MsaG030906	0.878424	5.958032e-69	9.996520e-66
MsaG000069	MsaG030906	0.885821	1.261832e-71	3.009541e-68
MsaG000137	MsaG030906	0.903540	7.299594e-79	4.607340e-75
MsaG000138	MsaG030906	0.800863	1.976147e-48	2.724413e-46
MsaG000202	MsaG030906	0.916916	2.514211e-85	3.795899e-81
MsaG000253	MsaG030906	0.801198	1.689096e-48	2.346301e-46
MsaG000286	MsaG030906	0.875764	4.947550e-68	7.361524e-65
MsaG000350	MsaG030906	0.832083	2.091749e-55	6.429367e-53

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030906	MtrunA17_Chr2g0308841	44.118	204	91	1	212	392	21	224	5.23e-58	194
MsaG030906	MtrunA17_Chr1g0203051	51.269	197	73	1	209	382	425	621	2.04e-57	202
MsaG030906	MtrunA17_Chr1g0203051	44.206	233	110	4	7	237	26	240	2.14e-56	200
MsaG030906	MtrunA17_Chr8g0389811	47.895	190	86	2	13	189	6	195	5.93e-52	176
MsaG030906	MtrunA17_Chr2g0331371	51.145	131	64	0	59	189	36	166	1.95e-38	140
MsaG030906	MtrunA17_Chr2g0287651	34.300	207	113	1	212	395	426	632	1.18e-30	127
MsaG030906	MtrunA17_Chr2g0287651	34.286	140	92	0	69	208	66	205	1.60e-18	89.7
MsaG030906	MtrunA17_Chr1g0171741	35.263	190	114	2	27	208	74	262	1.71e-30	120
MsaG030906	MtrunA17_Chr6g0473421	53.684	95	44	0	59	153	36	130	6.85e-30	114
MsaG030906	MtrunA17_Chr1g0172931	43.564	101	57	0	60	160	58	158	1.16e-22	94.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030906	AT4G38180.1	24.413	213	137	2	209	398	426	637	5.90e-18	88.2
MsaG030906	AT4G38170.1	23.346	257	159	4	179	407	170	416	8.01e-18	87.0
MsaG030906	AT3G06250.2	27.451	204	127	4	212	395	502	704	6.36e-17	84.7
MsaG030906	AT3G06250.1	27.451	204	127	4	212	395	502	704	6.36e-17	84.7
MsaG030906	AT3G06250.3	27.451	204	127	4	212	395	502	704	6.36e-17	84.7
MsaG030906	AT2G27110.2	23.318	223	149	3	212	413	376	597	6.74e-16	81.6
MsaG030906	AT2G27110.1	23.318	223	149	3	212	413	376	597	6.74e-16	81.6
MsaG030906	AT2G27110.3	23.318	223	149	3	212	413	231	452	7.71e-16	81.3
MsaG030906	AT5G18960.2	24.510	204	133	3	212	395	526	728	2.09e-15	80.1
MsaG030906	AT5G18960.1	24.510	204	133	3	212	395	526	728	2.09e-15	80.1

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Find 109 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGCATGCAGATTAA+AGG	0.242009	6:+16170509	MsaT030906.1:CDS
AACAGACTTTCCTTTGCTAT+AGG	0.343595	6:+16169227	MsaT030906.1:CDS
AAGTACACGTACAGAGACAT+TGG	0.607211	6:+16170923	MsaT030906.1:CDS
AAGTTGATGCAGGGGTGATT+AGG	0.350959	6:+16169269	MsaT030906.1:CDS
AAGTTTATGAGGAACATCAA+GGG	0.658451	6:+16169193	MsaT030906.1:CDS
AATAAATTTGTCATCCAATA+AGG	0.190503	6:-16169407	None:intergenic
AATTGGTACGCTAATGTGAA+TGG	0.457345	6:+16169151	MsaT030906.1:CDS
AATTTAAGTGCTCTTGTTTG+AGG	0.373335	6:+16170634	MsaT030906.1:CDS
AATTTATGTAATCACATATT+TGG	0.167783	6:+16170689	MsaT030906.1:CDS
AATTTCATAATGTACTCAGC+AGG	0.582900	6:-16169091	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	16168442	16171229	16168442	ID=MsaG030906
Chr6	mRNA	16168442	16171229	16168442	ID=MsaT030906.1;Parent=MsaG030906
Chr6	exon	16168442	16168513	16168442	ID=MsaT030906.1.exon1;Parent=MsaT030906.1
Chr6	CDS	16168442	16168513	16168442	ID=cds.MsaT030906.1;Parent=MsaT030906.1
Chr6	exon	16168941	16169495	16168941	ID=MsaT030906.1.exon2;Parent=MsaT030906.1
Chr6	CDS	16168941	16169495	16168941	ID=cds.MsaT030906.1;Parent=MsaT030906.1
Chr6	exon	16170141	16170307	16170141	ID=MsaT030906.1.exon3;Parent=MsaT030906.1
Chr6	CDS	16170141	16170307	16170141	ID=cds.MsaT030906.1;Parent=MsaT030906.1
Chr6	exon	16170377	16171229	16170377	ID=MsaT030906.1.exon4;Parent=MsaT030906.1
Chr6	CDS	16170377	16171229	16170377	ID=cds.MsaT030906.1;Parent=MsaT030906.1

Gene Sequence

>MsaT030906.1

ATGGAAGACGAAGCCACATCTGCTACACGCTCTGTCTCGCGGTCAAACGATGACGAAGTTGATCCAACCCAGGGATTGGAAGATAAGTCATTAGATGATGAGTATGATACTGACTTAAACGAGGAACATCTTGCCAATTCTGGATTTGATCGATGTAATTTTGATGACGATACTGCAATTAACGGGCTTCAAGATATATGGAAAGTTGAAGTAAATGAGGCACCTGCTGAGTACATTATGAAATTTCATTTTCCAAATAATGAGGTTGCTTTTGTGTTTTACAATTGGTACGCTAATGTGAATGGTTTTGCTGCCCGGAAAAGCAAGTTTATGAGGAACATCAAGGGTGAGATAACGCAACAGACTTTCCTTTGCTATAGGGAAGGTACTAGACAAGTAAAAGTTGATGCAGGGGTGATTAGGAAGCGACGTTCAAAACTACGGACCAGATGTGGTTGCTTGGCAAAATGTCGTGTTCATATTGAAGCTACCAATGGGAGATGGTACATCAAATATTTGAATGACGAACACAATCACCCCTTATTGGATGACAAATTTATTGGCATGTTACCTGCACATAGGAAGATGACGGAATATGATATATTGCAAATGAACAACATGAGAAAGCGTAAATGGGAATCAATGGTAGTTGAATTTTGTGTTGAGGAAAACAAATGGGTAAATGAACTGTACGAGAAGAGGAATATGTGGGCCACTGCTCATATTCGTGGTAATTTCTTTGCTGGTTTTAGGACGACTTCTCGTTGTGAGGCTTTGCATTCTCAACTGGGTAAGTACAAAGAAGTCGAAGCAGATTTTTCTTCGATCCATGGAGAGATTGTAATGCAGACTGAATTTCATTCTCTTGAGAGGTCAGCGGCTAATGTTTATACAAGAGAGATATTTTTGCTATTTCTTCCTGTACTAAAGAAAGCATGCAGATTAAAGGTGTTGGGTGTTAGACAAACCACAAGTAGTTATATATACACAGTGTCAAAGTATTGTAGAGAAGGGTCAGAATGGCAGGTGTCATATTACCCAGCTAGTCTCGAATTTAAGTGCTCTTGTTTGAGGTTGGAATCGTTGGGTATTCCATGCGAACACTTAATTTATGTAATCACATATTTGGACATTGTAAAACTCCCTGATTGTTTAGTTTTGAAGAGATGGAGAAAGGACGTGAAGGACTCATTGCCAATTTCAAATGATTGTCTGTCTTCTGCCTGGGACCCATCAATTGTAAGTCAATATGTTGGTATTGTAGAGCATTGCAAGAGGATGGCATGTGCTGCTGTAAAATGTCAAAATGCAGAGTACGTACGAAGCACTATAGAGTGGATAAGTACACGTACAGAGACATTGGAGTCAATTGCTGCAAAGGATATTCTGACTCATTCTGACTTAAACGGTGCTTTCGAAGAAAACTTGATGAACCCATCCCGTGCTAGAACTAAAGGTTGTCGTAGTGATGTGCCGTCTACTAGTAACCGATCAAAGCGACCATCACGTAAAGCACCAGCATGCGGCGTATGTCGTGAAGAGGGTCATAACCGAAAGTGTTGTCCGGTTCAAAGACGGACTGATGCCATGTCCCAAAATAAAGTTGGCTCAAATGTAATGTATTATGAAGATGAAGAGTGGCAGTAG

Protein sequence

>MsaT030906.1

MEDEATSATRSVSRSNDDEVDPTQGLEDKSLDDEYDTDLNEEHLANSGFDRCNFDDDTAINGLQDIWKVEVNEAPAEYIMKFHFPNNEVAFVFYNWYANVNGFAARKSKFMRNIKGEITQQTFLCYREGTRQVKVDAGVIRKRRSKLRTRCGCLAKCRVHIEATNGRWYIKYLNDEHNHPLLDDKFIGMLPAHRKMTEYDILQMNNMRKRKWESMVVEFCVEENKWVNELYEKRNMWATAHIRGNFFAGFRTTSRCEALHSQLGKYKEVEADFSSIHGEIVMQTEFHSLERSAANVYTREIFLLFLPVLKKACRLKVLGVRQTTSSYIYTVSKYCREGSEWQVSYYPASLEFKCSCLRLESLGIPCEHLIYVITYLDIVKLPDCLVLKRWRKDVKDSLPISNDCLSSAWDPSIVSQYVGIVEHCKRMACAAVKCQNAEYVRSTIEWISTRTETLESIAAKDILTHSDLNGAFEENLMNPSRARTKGCRSDVPSTSNRSKRPSRKAPACGVCREEGHNRKCCPVQRRTDAMSQNKVGSNVMYYEDEEWQ*